Latham

Germplasm Overview
NameLatham
AliasN/A
Institutional NameLatham
Sample NameEY0052966_CLT2_CLT2_snapper_rubus.cel
GRIN IDN/A
TypeCultivar
SpeciesRubus idaeus
DescriptionNorth American red raspberry
Origin CountryN/A
Origin DetailN/A
PedigreeN/A
Maternal ParentN/A
Paternal ParentN/A
Maternal Parent ofN/A
Paternal Parent of96395S1_x_Latham-F1
Phenotypic Data[view all 7]
SSR Genotype DataN/A
SNP Genotype Data[view all 12449]
Map[view all 1]
DNA LibraryN/A
SequenceN/A
CommentsN/A
Reference[view all 4]
Genetic Map Data
NameTypePopulationTypeGenome Group
Raspberry-S1xL-F1geneticF1
Qtl
Total 95 records
#NameDataset
1qQU.S1L-ch3.1.2009-S1Raspberry flavor and nutritive traits-Bushakra-2013
2qQU.S1L-ch3.2.2009-S1Raspberry flavor and nutritive traits-Bushakra-2013
3qFRW-GMxL-LG1.JHI-OFRaspberry-ripening_and_softening_genes-Graham-2017
4qFRW-GMxL-LG3.JHI-PTRaspberry-ripening_and_softening_genes-Graham-2017
5qFRW-GMxL-LG5.JHI-PTRaspberry-ripening_and_softening_genes-Graham-2017
6qFRW-GMxL-LG5.JHI-OFRaspberry-ripening_and_softening_genes-Graham-2017
7qFRL.GMxL-LG1.JHI-OFRaspberry-ripening_and_softening_genes-Graham-2017
8qFT.GMxL-LG1.JHI-OF.1Raspberry-ripening_and_softening_genes-Graham-2017
9qFT.GMxL-LG3.JHI-OF.1Raspberry-ripening_and_softening_genes-Graham-2017
10qFT.GMxL-LG3.JHI-OF.2Raspberry-ripening_and_softening_genes-Graham-2017
11qFT.GMxL-LG3.JHI-OF.3Raspberry-ripening_and_softening_genes-Graham-2017
12qFT.GMxL-LG3.JHI-OF.4Raspberry-ripening_and_softening_genes-Graham-2017
13qFT.GMxL-LG3.JHI-OF.5Raspberry-ripening_and_softening_genes-Graham-2017
14qFT.GMxL-LG3.JHI-PT.1Raspberry-ripening_and_softening_genes-Graham-2017
15qFT.GMxL-LG3.JHI-PT.2Raspberry-ripening_and_softening_genes-Graham-2017
16qFT.GMxL-LG3.JHI-PT.3Raspberry-ripening_and_softening_genes-Graham-2017
17qFT.GMxL-LG3.JHI-PT.4Raspberry-ripening_and_softening_genes-Graham-2017
18qFT.GMxL-LG3.JHI-PT.5Raspberry-ripening_and_softening_genes-Graham-2017
19qFT.GMxL-LG3.JHI-PT.6Raspberry-ripening_and_softening_genes-Graham-2017
20qFT.GMxL-LG5.JHI-PTRaspberry-ripening_and_softening_genes-Graham-2017
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Publications
YearPublication
2017Simpson CG, Cullen DW, Hackett CA, Smith K, Hallett PD, McNicol J, Woodhead M, Graham J. Mapping and expression of genes associated with raspberry fruit ripening and softening. Theoretical and Applied Genetics. 2017; 130(3):557-572.
2012Bushakra JM, Stephens MJ, Atmadjaja AN, Lewers KS, Symonds VV, Udall JA, Chagné D, Buck EJ, Gardiner SE. Construction of black (Rubus occidentalis) and red (R. idaeus) raspberry linkage maps and their comparison to the genomes of strawberry, apple, and peach. 2012 Jul; 125(2):311-27.
2013Bushakra JM, Krieger C, Deng D, Stephens MJ, Allan AC, Storey R, Symonds VV, Stevenson D, McGhie T, Chagné D, Buck EJ, Gardiner SE. QTL involved in the modification of cyanidin compounds in black and red raspberry fruit. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2013 Mar; 126(3):847-65.
2023Montanari S, Deng C, Koot E, Bassil NV, Zurn JD, Morrison-Whittle P, Worthington ML, Aryal R, Ashrafi H, Pradelles J, Wellenreuther M, Chagné D. A multiplexed plant-animal SNP array for selective breeding and species conservation applications. G3 (Bethesda, Md.). 2023 Aug 11. DOI: 10.1093/g3journal/jkad170
Snp Genotype Data
Total 12,449 records
Download Table
#DatasetMarker NameAlleleGenotype
1Rubus-SNP array validation panel-Montanari-2023Rub_AX-566096967MA|A
2Rubus-SNP array validation panel-Montanari-2023Rub_AX-566096971YT|T
3Rubus-SNP array validation panel-Montanari-2023Rub_AX-566096983RG|G
4Rubus-SNP array validation panel-Montanari-2023Rub_AX-566096984RG|G
5Rubus-SNP array validation panel-Montanari-2023Rub_AX-566096987KT|G
6Rubus-SNP array validation panel-Montanari-2023Rub_AX-566096989YT|T
7Rubus-SNP array validation panel-Montanari-2023Rub_AX-566096996YT|T
8Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097001RA|G
9Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097004YC|C
10Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097007YT|T
11Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097008RA|G
12Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097013YC|C
13Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097018RA|A
14Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097021RG|G
15Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097031RG|G
16Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097038KT|T
17Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097040RA|A
18Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097047RG|G
19Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097052KG|G
20Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097055YT|C
21Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097056RA|A
22Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097063KT|T
23Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097072YT|T
24Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097082MA|C
25Rubus-SNP array validation panel-Montanari-2023Rub_AX-566097085MA|A
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Phenotypic Data
Phenotypic Data
Total 7 trait scores
Download Table
# Dataset Descriptor Value
1Raspberry-ripening_and_softening_genes-Graham-2017fruit firmness1
2Raspberry-ripening_and_softening_genes-Graham-2017fruit firmness2
3Raspberry-ripening_and_softening_genes-Graham-2017fruit length15.2
4Raspberry-ripening_and_softening_genes-Graham-2017fruit weight2.93
5Raspberry-ripening_and_softening_genes-Graham-2017final load0.34
6Raspberry-ripening_and_softening_genes-Graham-2017force/mass134.8
7Raspberry-ripening_and_softening_genes-Graham-2017peak stress1.08
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Paternal Parent Of
Germplasm Name Description Type
96395S1_x_Latham-F1black raspberry x red raspberry cross for fruit color characteristicspopulation