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Marker Overview
Name | s3_15681482 |
dbSNP ID | N/A |
SNP Array ID | Cherry 6+9K SNP array: | s3_15681482 |
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Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | AGCCAGACCTGGTGGACCACCTCACATCCGCATAACAGGCATCGACGACTCCATGTCAGC
TTATGCCCGCGGAGGAGGACTAAATATTGTAGGGAAGAGGCTATCTAAGCTTGCCGAGTT
GTTCAAAGTGCCATTTGAGTTCCATGCTGC |
3' Flanking Sequence | GCCATGTCTGGTTGCGAGGTTCAGCTGAAGCATCTTGGTGTTCGACCTGGGGAGGCATTG
GCTATGAACTTTGCATTCATGCTGCACCACATGCCAGATGAGAGTGTCAGCACTCAGAAT
CATCGCGACCGGTTGTTGAGGTTGGTTAAG |
Species | Prunus avium |
Publication | [view all] |
Contact | Patricio Hinrichsen Stijn Vanderzande
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Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), genetically mapped |
Publications
Year | Publication |
2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s3_15681482 ID=s3_15681482; Name=s3_15681482; organism=Prunus avium; type=genetic_marker; length=301bp AGCCAGACCTGGTGGACCACCTCACATCCGCATAACAGGCATCGACGACT CCATGTCAGCTTATGCCCGCGGAGGAGGACTAAATATTGTAGGGAAGAGG CTATCTAAGCTTGCCGAGTTGTTCAAAGTGCCATTTGAGTTCCATGCTGC YGCCATGTCTGGTTGCGAGGTTCAGCTGAAGCATCTTGGTGTTCGACCTG GGGAGGCATTGGCTATGAACTTTGCATTCATGCTGCACCACATGCCAGAT GAGAGTGTCAGCACTCAGAATCATCGCGACCGGTTGTTGAGGTTGGTTAA G
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