FEM_cg_18, FEM_cg_18 (genetic_marker) Malus x domestica

Marker Overview

Name

FEM_cg_18

dbSNP ID

SNP Array ID

20K SNP array for apple:

FEM_cg_18

Type

SNP

SNP Alleles

T/C

Probe 1

FEM_cg_18.probe: CACAACAAATCCATGTCATATTCCAAAACTGCATCAACGTTCAAGCTTCC

5' Flanking Sequence

ATCCAAGACGCACAACAAATCCATGTCATATTCCAAAACTGCATCAACGTTCAAGCTTCC

3' Flanking Sequence

GTCTCACGGTAACTGCACCAGAGGACAGCCCTAATACGGACGGAATTCATGTGACACACT

Species

Malus x domestica

Publication

[view all]

Contact

Michela Troggio

Contact

Name

Details

Michela Troggio

First name:	Michela
Last name:	Troggio
Title:	Researcher
Institution:	Research and Innovation Centre, Fondazione Edmund Mach
Address:	Via Edmund Mach, 1, 38010 San Michele All'adige TN, Italy
Country:	Italy
Email:	ti.hcamf@oiggort.alehcim
Phone:	+39 0461 615111
Fax:	+39 0461 650218

Libraries


Library Name	Type
20K SNP array for apple	SNP_chip

Publications


Year	Publication
2014	Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-consensus-Allard-2016	LG10	N/A	37.37	FEM_cg_18	View

Sequence

>FEM_cg_18 ID=FEM_cg_18; Name=FEM_cg_18; organism=Malus x domestica; type=genetic_marker; length=125bp
ATCCAAGACGCACAACAAATCCATGTCATATTCCAAAACTGCATCAACGT
TCAAGCTTCC[T/C]GTCTCACGGTAACTGCACCAGAGGACAGCCCTAAT
ACGGACGGAATTCATGTGACACACT