|
|
Marker Overview
| Name | s2_26590074 |
|---|
| dbSNP ID | N/A |
|---|
| SNP Array ID | | Cherry 6+9K SNP array: | s2_26590074 |
|
|---|
| Type | SNP |
|---|
| SNP Alleles | T/C |
|---|
| 5' Flanking Sequence | CTGTTGCTGCTGCTGCTTTGATGGAGAGATTCTGCCATCATCAATGTTTTCGGTTGAAGT
AACTCCATTAATCTGATCCAACCCCTCCTCACCAACCCCCACCTTTGAGTCCACTTCCTC
TTCAAAGGATTCCTGCTCTTGTTCCCTCTC |
|---|
| 3' Flanking Sequence | GGCGAGAATTCCTTCTTTTCAATCTTGCAGCTCTCCCACATCTTATATTCAACTTCTACA
GAGTCATCCTCTTTCTCTTTGCTCTCATCTTCTTTTGGTTTCCCATTCAGAGTATCAACT
TTAGCAAAATCCACTTGTTCGGCCTTGTCA |
|---|
| Species | Prunus avium |
|---|
| Publication | [view all] |
|---|
| Contact | Patricio Hinrichsen
Stijn Vanderzande
|
|---|
| Comment | sweet cherry SNPs identified by GBS from Guajardo et al (2015), unmapped - intergenic SNPs |
|---|
Publications
| Year | Publication |
|---|
| 2015 | Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015. |
| 2020 | Vanderzande S, Zheng P, Cai L, Barac G, Gasic K, Main D, Iezzoni A and Peace C. The cherry 6+9K SNP array: a cost-effective improvement to the cherry 6K SNP array for genetic studies. Scientific Reports 10, 7613 (2020). https://doi.org/10.1038/s41598-020-64438-x |
Sequence
>s2_26590074 ID=s2_26590074; Name=s2_26590074; organism=Prunus avium; type=genetic_marker; length=301bp
CTGTTGCTGCTGCTGCTTTGATGGAGAGATTCTGCCATCATCAATGTTTT
CGGTTGAAGTAACTCCATTAATCTGATCCAACCCCTCCTCACCAACCCCC
ACCTTTGAGTCCACTTCCTCTTCAAAGGATTCCTGCTCTTGTTCCCTCTC
YGGCGAGAATTCCTTCTTTTCAATCTTGCAGCTCTCCCACATCTTATATT
CAACTTCTACAGAGTCATCCTCTTTCTCTTTGCTCTCATCTTCTTTTGGT
TTCCCATTCAGAGTATCAACTTTAGCAAAATCCACTTGTTCGGCCTTGTC
A
|
