AX-89808404, AX-89808404 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89808404
Genbank IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88887992
TypeIndel
Probe 1AX-89808404.AX-89808404: TCGCAGTCGTTTCAGAGTGTTTTGAGGTCA
5' Flanking SequenceATATCAAGCGTCAGCAAAGTCTCACAAAACTCCAG
3' Flanking SequenceTCACTTGGCAGCATGTATATAGTGCTCTACGGAAA
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Fvb6chromosomeFvb6:34681477..34681546 +Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotationn/a
LG6chromosomeLG6:32954091..32954091 .Fragaria vesca Whole Genome v1.1 Assembly & Annotationn/a
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
Alignment of Fragaria x ananassa 90K Array SNPs to Fragaria vesca Genome v2.02016-11-22
90K SNP array for the cultivated strawberry Fragaria x ananassa2014-07-23
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Strawberry-HK-F1-SNPLG6DN/A83.06AX-89808404View
Sequence
>AX-89808404 ID=AX-89808404; Name=AX-89808404; organism=Fragaria x ananassa; type=genetic_marker; length=77bp
ATATCAAGCGTCAGCAAAGTCTCACAAAACTCCAG[-/TAC]TCACTTGG
CAGCATGTATATAGTGCTCTACGGAAA