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Marker Overview
Name | JPsnpHou00184 |
dbSNP ID | N/A |
Type | SNP |
SNP Alleles | C/G |
5' Flanking Sequence | ACGACGTACGGAAAAGAAGGTAGAAACAAAAAAGTTTGAAATTTAATGACAAGCAGATGA
AAGCTGCCAAAAGGAGTGGAAGTCGGGTCCAACAGGAGAAAGTCAAGGATAAAGCTAAGT
CTGCAGCAGCTAAGGAAGCATCAAAGAACAAGGCCAAGGGAAAAGTTGATGAAGATGATG
CACCAGCTGAGGCTCCTAGGAAATGGAGAGATTACAGTGTGGAGTTCCACTTTCCTGAAC
CTACAGAGCTTACTCCTCCACTTTTGCAACTTGTTGAAGTCAGCTTCAGTTATCCGAATC
GGGAGGATTTCAGGCTGTCAGGTGTTGATGTTGGTATTGATATGGGGACTCGTGTTGCCA
TTGTTGGACCTAACGGAGCTGGAAAGTCTACTCTGCTCAACCTTCTTGCAGGTGATTTGG
TTCCTTCGGAGGGTGAAGTACGGAGGAGTCAGAAGTTGAGGATCGGTAGGTATTCGCAAC
ACTTTGTGGACCTCCTGACAATGGGCGAGACCCCGGTTCAGTACCTTCTCCGGCTTCATC
CAGACCAAGAGGGACTTAGCAAGCAAGAGGCTGTTCGTGCAAAGCTTGGAAAATTTGGAC
TCCCCAGCCACAACCATCTCACTCCCATTGCAAAATTATCTGGAGGGCAGAAAGCCCGAG
TTGTGTTCACGTCGATATCCATGTCAAGGCCCCACATTTTGCTGTTGGATGAACCAACGA
ATCATTTGGATATGCAGAGTATTGATGCACTGGCCGATGCACTTGACGAATTCACCGGTG
GAGTTGTACTGGTGAGTCATGATTCTAGGCTGATATCGCGCGTGTGCGAGAACGAAGAGA
GGAGTGAAATTTGGGTTGTTGAGAATGGCACGGTGACCCCGTACCCTGGGACTTTTGAGG
AGTACAAGGAGGAGCTACAAAGAGAAATTAAAGAGGAGGTCGATGACTGAGGTTTGCACT
TTTTATAGCTGTAATATTTTTGCTGATCATTCTAAGAATTCCATGAGTTTGCTTGTTG |
3' Flanking Sequence | TTGCTCATGTAATTTAGTTGGTTTTTCTGATCCGAATGTAACAATTAATAGAGATGTGTT
AAATTTTTATATGCAGTTCTAGACGCGAAACGAGGCCTACAAGAACGGTATTTGAACTTG
GTTGTCAGAATATTATACGTTGATTCTAGACTATATTTGAATTTAAA |
Species | Pyrus pyrifolia |
Publication | [view all] |
Contact | Toshiya Yamamoto
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Comment | SNP position in sequence: 1019 |
Publications
Year | Publication |
2014 | Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863. |
Sequence
>JPsnpHou00184 ID=JPsnpHou00184; Name=JPsnpHou00184; organism=Pyrus pyrifolia; type=genetic_marker; length=1186bp ACGACGTACGGAAAAGAAGGTAGAAACAAAAAAGTTTGAAATTTAATGAC AAGCAGATGAAAGCTGCCAAAAGGAGTGGAAGTCGGGTCCAACAGGAGAA AGTCAAGGATAAAGCTAAGTCTGCAGCAGCTAAGGAAGCATCAAAGAACA AGGCCAAGGGAAAAGTTGATGAAGATGATGCACCAGCTGAGGCTCCTAGG AAATGGAGAGATTACAGTGTGGAGTTCCACTTTCCTGAACCTACAGAGCT TACTCCTCCACTTTTGCAACTTGTTGAAGTCAGCTTCAGTTATCCGAATC GGGAGGATTTCAGGCTGTCAGGTGTTGATGTTGGTATTGATATGGGGACT CGTGTTGCCATTGTTGGACCTAACGGAGCTGGAAAGTCTACTCTGCTCAA CCTTCTTGCAGGTGATTTGGTTCCTTCGGAGGGTGAAGTACGGAGGAGTC AGAAGTTGAGGATCGGTAGGTATTCGCAACACTTTGTGGACCTCCTGACA ATGGGCGAGACCCCGGTTCAGTACCTTCTCCGGCTTCATCCAGACCAAGA GGGACTTAGCAAGCAAGAGGCTGTTCGTGCAAAGCTTGGAAAATTTGGAC TCCCCAGCCACAACCATCTCACTCCCATTGCAAAATTATCTGGAGGGCAG AAAGCCCGAGTTGTGTTCACGTCGATATCCATGTCAAGGCCCCACATTTT GCTGTTGGATGAACCAACGAATCATTTGGATATGCAGAGTATTGATGCAC TGGCCGATGCACTTGACGAATTCACCGGTGGAGTTGTACTGGTGAGTCAT GATTCTAGGCTGATATCGCGCGTGTGCGAGAACGAAGAGAGGAGTGAAAT TTGGGTTGTTGAGAATGGCACGGTGACCCCGTACCCTGGGACTTTTGAGG AGTACAAGGAGGAGCTACAAAGAGAAATTAAAGAGGAGGTCGATGACTGA GGTTTGCACTTTTTATAGCTGTAATATTTTTGCTGATCATTCTAAGAATT CCATGAGTTTGCTTGTTGsTTGCTCATGTAATTTAGTTGGTTTTTCTGAT CCGAATGTAACAATTAATAGAGATGTGTTAAATTTTTATATGCAGTTCTA GACGCGAAACGAGGCCTACAAGAACGGTATTTGAACTTGGTTGTCAGAAT ATTATACGTTGATTCTAGACTATATTTGAATTTAAA
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