JPsnpHou00098, JPsnpHou00098 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00098
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CAAACAAAAATACAGAACTATATACATAAGAAGCCGAAGAAATGACTGATTAACTGCAGG ACATGAAGATGAACGACTGTCGAAGCTTTTCAATAAACAAGAAATTAAGCTACATACATA CAATACTGCATATTTGCTGCATACATTACACGGTTTAAAGTTGAGAGAAATTAATGGATT TGGATGGATGGTTGGTTGGCCCTTTTGTTTGGATGATCACCATTTCCAGAAAACGTTGGA ACCACACTTGTACTTGTCCTTGCCTTCGCACTCCAAACTAAGATCGTCAGAGAGAAATGG TACTTTCTTTTGCTTGGCAAGATCTTGGCAGCCAGTGAAGTTCTCAGGGAACTTACATGA TCCAAATTGAACAGTGAATGCTCTTGCAAAGTTTGCACCGCTCGTTGCCAGCCTCTTCTT CTCATTCAGTTCCTTGTTGGCTTTGCTTTTTTCGAGGTAATCATCAATGACACCGGCATT GGCAGCGATGAACTCTAGTGTGCTGGCATGCAACTATGCCGTCTCCGGCACCAGAATGTC TGAACTTGTCAATGCAAAGACGACTTGCATGCCTTCAGTTGTATCAGCTGCTCAGACCAA AGTTGTAGCACTCAGGGCCCAACAACCAAGCACACAAAATAATCAAGGAGCTGATGGAAG AAGGGCTGTGCTGCTCTCCCTGGCGGCCATTGCTTTCACCGCTGTTTCTTCCAACTCCGC TGCCAATGCCGGTGTCATTGATGATTACCTCGAAAAAAGCAAAGCCAACAAGGAACTGAA TGACAAGAAGAGGCTGGCAACGAGCGGTGCAAACTTTGCAAGAGCATTCACTGTTCAATT TGGATCATGTAAGTTCCCTGAGAACTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGAA AGTACCATTTCTCTCTGACGATCTTAGTTTGGAGTGCGAAGGCAAGGACAA
3' Flanking Sequence	TACAAGTGTGGTTCCAACGTTTTCTGGAAATGGTGATCATCCAAACAAAAGGGnCAACCA AnCATCCATCCAAATCCATTAATTTCTCTCAACTTTAAACCGTGTAATGTATGCAGCAAA TATGCAGTATTGTATGTATGTAGCTTAATTTCTTGTTTATTGAAAAGCTTCGACAGTCGT TCATCTTCATGTCCTGCAGTTAATCAGTCATTTCTTCGGCTTCTTATGTATATAGTTCTG TATTTTTGTTTGAACTCTTGGCATCTTGAAAGATAGAAGAACTGGATATACAAAAAAAAA AAAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 952

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG1	N/A	36.18	JPsnpHou00098	View

Sequence

>JPsnpHou00098 ID=JPsnpHou00098; Name=JPsnpHou00098; organism=Pyrus pyrifolia; type=genetic_marker; length=1256bp
CAAACAAAAATACAGAACTATATACATAAGAAGCCGAAGAAATGACTGAT
TAACTGCAGGACATGAAGATGAACGACTGTCGAAGCTTTTCAATAAACAA
GAAATTAAGCTACATACATACAATACTGCATATTTGCTGCATACATTACA
CGGTTTAAAGTTGAGAGAAATTAATGGATTTGGATGGATGGTTGGTTGGC
CCTTTTGTTTGGATGATCACCATTTCCAGAAAACGTTGGAACCACACTTG
TACTTGTCCTTGCCTTCGCACTCCAAACTAAGATCGTCAGAGAGAAATGG
TACTTTCTTTTGCTTGGCAAGATCTTGGCAGCCAGTGAAGTTCTCAGGGA
ACTTACATGATCCAAATTGAACAGTGAATGCTCTTGCAAAGTTTGCACCG
CTCGTTGCCAGCCTCTTCTTCTCATTCAGTTCCTTGTTGGCTTTGCTTTT
TTCGAGGTAATCATCAATGACACCGGCATTGGCAGCGATGAACTCTAGTG
TGCTGGCATGCAACTATGCCGTCTCCGGCACCAGAATGTCTGAACTTGTC
AATGCAAAGACGACTTGCATGCCTTCAGTTGTATCAGCTGCTCAGACCAA
AGTTGTAGCACTCAGGGCCCAACAACCAAGCACACAAAATAATCAAGGAG
CTGATGGAAGAAGGGCTGTGCTGCTCTCCCTGGCGGCCATTGCTTTCACC
GCTGTTTCTTCCAACTCCGCTGCCAATGCCGGTGTCATTGATGATTACCT
CGAAAAAAGCAAAGCCAACAAGGAACTGAATGACAAGAAGAGGCTGGCAA
CGAGCGGTGCAAACTTTGCAAGAGCATTCACTGTTCAATTTGGATCATGT
AAGTTCCCTGAGAACTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGAA
AGTACCATTTCTCTCTGACGATCTTAGTTTGGAGTGCGAAGGCAAGGACA
ArTACAAGTGTGGTTCCAACGTTTTCTGGAAATGGTGATCATCCAAACAA
AAGGGnCAACCAAnCATCCATCCAAATCCATTAATTTCTCTCAACTTTAA
ACCGTGTAATGTATGCAGCAAATATGCAGTATTGTATGTATGTAGCTTAA
TTTCTTGTTTATTGAAAAGCTTCGACAGTCGTTCATCTTCATGTCCTGCA
GTTAATCAGTCATTTCTTCGGCTTCTTATGTATATAGTTCTGTATTTTTG
TTTGAACTCTTGGCATCTTGAAAGATAGAAGAACTGGATATACAAAAAAA
AAAAAC