Mdo-HB-17-7

Haplotype Block Overview
Name Mdo-HB-17-7
Species Malus x domestica
Stock Haplotype [view all 430]
Haplotype [view all]
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 4
Rome Beauty Law 4 6
Jonafree 21 6
Redfree 21 7
Spartan 14
Wagener 10 5
Worcester Pearmain 10 5
Tsugaru 14 5
Golden Delicious 4 5
Fuji 5 7
Empire 10 5
Gala 4 5
Honeycrisp 5 7
Elstar 4 5
Marshall McIntosh 10 14
Cripps Pink 14 5
Granny Smith 10 7
Jonathan 14 4
Ralls Janet 3 7
Delicious 14 5
Discovery 4 5
Prima 5 6
821 20
Fiesta 10 4
Ingrid Marie 4 5
Idared 10 4
Esopus Spitzenburg 4
Braeburn 4 5
Sansa 10 4
Lodi 4 7
James Grieve 4 7
Cripps Red 10 5
Burgundy 14 4
Akane 10 14
Ambrosia 5
Aurora Golden Gala 4 5
Beacon 14
Ben Davis 21 4 5 7
Cameo 4 5
Chinook 14 5
Clivia 4 5
Co-op 17 4 5
Co-op 18 58 59
Dayton 10 14 4 5
Delblush 5 7
Delcorf 7
Delorgue 14 7
Dolgo 6
Geheimrat Dr. Oldenburg 4 5
Duchess of Oldenburg 6 7
Early Cortland 10 4 7
Empress 14 4
F2 26829-2-2 21 6
Fantazja 10 14
Fireside 33 7
Fortune 4
Frostbite 7
Ginger Gold 5 7
GMAL 4327 6 7
GMAL 4328 37 7
GMAL 4329 10 4
GMAL 4332 6 7
Goodland 6
Haralson 14 7
Honeygold 14 5
Hudson 10 5
Jersey Black 14 3
Jonamac 14
Keepsake 10 7
Kerr 14 6
Lady Williams 10 14
Liberty 14 6
Linda 14 4
Longfield 10
Macoun 14
Malinda 10 14
Melba 14 6
Melrose 14 5
MN 1627 5 7
MN 1628 10 7
MN 1691 33 6
MN 1706 11 51
MN 1708 5 7
MN 1760 7
MN 1764 10 7
MN 1789 6 7
MN 1802 14
MN 1836 7
MN 1837 6 7
MN 1839 4 7
MN 1888 33 5
MN 1899 14 33
MN 1940 14 6
MN 2016 5 6
AA-44 6 7
Monroe 4
Montgomery 14 4
Nicola 14 4
NJ 31 6
NJ 53 10 6
Oriole 6 7
PRI 14-126 21 4
PRI 14-510 5 6
PRI 16-144 21
PRI 1661-2 14
PRI 54-12 6 7
PRI 855-102 21
Primula 4 6
Raritan 18 64
Regent 10 14
Russian Seedling 51
Sawa 10 6
Sciros 14 5
Sharon 10 6
Silken 5
Wildung 10 7
Splendour 14 5
State Fair 10 7
NJ 55 4
Co-op 29 14 5
Sunrise 14 5
Sweet Sixteen 11 7
Topaz 5 7
Vista Bella 10 4
Wealthy 14 7
Winesap 5 7
Winter Banana 14 4
Yellow Newtown 18 63
Yellow Transparent 6 7
0407-0005 5
0407-0006 10 5
0407-0007 5
0407-0008 10 4
0408-0003 14 4
0408-0004 14 4
0408-0005 14 4
0408-0007 14 4
0408-0008 14 5
0408-0010 14 4
0408-0011 14 5
0408-0014 14 4
0408-0015 14 4
0409-0022 5
0409-0024 4 7
0409-0028 4 7
0409-0030 5
0409-0032 4 7
0409-0035 4 7
0409-0036 4 5
0409-0038 4 7
0409-0039 5 7
0409-0040 4 7
0409-0043 4 7
0409-0045 5
0410-0002 4 7
0410-0003 10 4
0410-0005 10 4
0410-0006 10 5
0410-0010 4 7
0410-0011 10 4
0410-0012 4 7
0410-0013 5 7
0410-0015 5 7
0410-0017 10 5
0410-0018 5 7
0414-0010 5
0414-0015 10 5
0414-0017 10 5
0414-0018 14 7
0414-0019 10 5
0414-0020 14 7
0414-0021 10 5
0415-0001 14 7
0415-0004 14 7
0415-0005 14 7
0415-0011 14 5
0415-0012 14 7
0415-0013 14 5
0415-0014 10 5
0415-0016 14 5
0415-0017 14 7
0415-0019 14 5
0415-0020 14 5
0415-0025 14 7
AE_HCxJonf-145 5 6
AE_HCXJonf-148 6 7
AE_HCxJonf-157 21 7
AE_HCXJonf-162 21 5
AE_HCXJonf-168 4 5
AE_HCxJonf-175 21 5
AE_HCxJonf-183 6 7
AE_HCxJonf-185 5 6
AE0118-237 14 5
AE0118-238 14 5
AE0118-239 4 5
AE0118-240 14 5
AE0118-243 14 7
AE0118-244 10 7
AE0118-245 10 5
AE0118-246 10 7
AE0118-249 14 5
AE0206-159 5 7
AE0206-160 5 7
AE0206-161 5 7
AE0206-162 5 6
AE0206-163 5 7
AE0206-164 5 6
AE0206-165 5 6
AE0206-167 5 7
AE0206-168 5 6
AE0206-169 5 6
AE0206-170 5 7
AE0210-146 14 4
AE0210-147 10 14
AE0210-149 14 4
AE0210-150 10 5
AE0210-151 4 5
AE0210-152 5 6
AE0210-153 10 14
AE0210-154 10 14
AE0210-157 10 5
AE0210-158 4 5
AE0210-159 14 4
AE0210-162 14 4
AE0210-163 4 5
AE0210-164 14 4
AE0210-165 14 4
AE0210-166 4 5
AE0210-168 14 4
AE0210-169 14 4
AE0210-170 4 5
AE0210-171 4 5
AE0210-172 10 14
AE0210-173 10 5
AE0210-174 10 5
AE0213-175 5 6
AE0213-176 7
AE0213-177 5 7
AE0213-178 5 7
AE0213-179 7
AE0213-180 7
AE0213-181 5 7
AE0213-182 7
AE0213-183 6 7
AE0213-186 5 7
AE0213-187 6 7
AE0213-190 5 6
AE0213-193 6 7
AE0213-194 6 7
AE0213-195 7
AE0213-196 7
AE0213-197 5 6
AE0213-198 7
AE0213-199 5 6
AE0213-200 5 7
AE0213-201 7
AE0213-202 6 7
AE0213-205 7
AE0213-206 5 7
AE0251-323 11 5
AE0251-325 5 7
AE0251-327 5 7
AE0251-329 5 7
AE0251-330 5 7
AE0251-331 11 5
AE0251-342 5 7
AE0251-343 11 5
AE0406-239 5 7
AE0406-254 5 7
AE0406-258 5
AE0406-259 5
AE0406-263 5 7
AE0406-264 5 7
AE0406-266 5
AE0406-271 5
AE0406-274 5
AE0406-278 5 7
AE0406-281 5 7
AE0406-286 5 7
AE0406-288 5 7
AE0406-289 5 7
AE0406-294 5
AE0406-298 5
Minneiska 5 7
NJ 303955 4
PRI 612-1 14 21
Arlet 10 5
Co-op 39 5
Pinova 4 5
Scired 14 4
Scifresh 5
0409-0025 4 7
0409-0026 5
0409-0027 5 7
0409-0031 5 7
0409-0033 5
0409-0047 5
G-14-050 5 7
G-14-052 4 7
G-14-054 4 7
G-14-055 4 7
G-14-056 5 7
G-14-057 4 5
G-14-059 4
G-14-060 4 7
G-14-061 5 7
G-14-062 5 7
G-14-064 5 7
G-14-065 5 7
G-14-069 4 7
G-14-067 4 5
G-14-068 4 5
G-14-071 4
G-14-073 4
G-14-074 4
G-14-075 4 5
G-14-076 4 5
G-14-077 4 5
G-14-078 4
G-14-080 4
G-09-232 4 7
G-09-233 4 5
G-09-234 4 5
G-09-235 4 7
G-09-236 4 5
G-09-237 4 7
G-09-238 4 5
G-09-239 5
G-09-240 5 7
G-09-241 4 7
G-09-242 4 7
G-09-243 4 7
G-09-245 4 7
G-09-246 4 7
G-09-258 4 7
G-09-259 4 5
G-09-260 4 5
G-09-261 4 5
G-09-262 4 7
G-09-263 5 7
G-09-264 4 7
G-09-265 4 7
G-09-266 4 7
G-09-267 4 7
G-09-268 4 7
0408-0021 14 4
Wijcik McIntosh 10 14
Beauty of Bath 25 4
Priam 14 4
Northern Spy 10 11
Co-op 15 21 5
MN 1702 33 7
WA 2 4 5
WA 5 5
Pitmaston Pineapple 4 5
0411-0011 14 5
0411-0017 14 5
0411-0023 14 5
AE0250-086 5 7
AE0250-087 5 7
AE0250-089 5 7
AE0250-090 5 7
AE0250-092 5 7
AE0250-093 5 7
AE0250-094 5 7
AE0250-095 5 7
Sonya 4 5
Co-op 38 4
AE0250-096 4 6
AE0250-327 14 6
Co-op 30 14
Jonagrimes 4 7
AE0211-036 4 5
G-07-039 10 5
PRI 14-152 5 6
PRI 47-176 21 4
G-07-041 4 7
BC-8S-27-43 5
AE0250-091 5 6
AE0250-097 6 7
AE0250-325 6 7
AE0250-326 5 6
AE0250-329 5 7
AE0250-333 5 6
AE0250-334 7
AE0250-335 6 7
AE0250-336 5 7
AE0250-338 7
AE0250-341 5 7
AE0211-038 7
AE0211-043 37 5
AE0211-045 37 5
AE0211-051 37 5
G-07-010 10 4
G-07-014 10 4
G-07-015 10
G-07-019 10 7
G-07-020 4 7
G-07-024 10 4
G-07-032 4 7
G-07-033 10 7
G-07-034 10 4
G-07-035 10 7
G-07-044 10 7
AE0211-053 7
AE0211-054 5 7
AE0250-088 6 7
AE0250-324 5 6
AE0250-328 5 7
AE0250-331 5 6
AE0250-332 5 7
AE0250-337 5 7
AE0250-339 7
Minnewashta 6 7
Autumn Crisp 4
G-14-066 4 5
Lu1-11-010 14 5
Lu1-11-013 14 5
Lu1-11-016 4 7
Lu1-11-017 14 5
Lu1-11-018 4 5
NJ 90 10 14
Lord Lambourne 5 7
Antonovka GH 18 37
Grimes Golden 2 4
Kidds Orange Red 14 4
Malus baccata Hansen #2 10 4
Malus baccata Jackii 18 7
Summerred 24 7
William's Pride 14 4
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-17-7Apple-RosBREED-3.9K-2019176.196.19
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970
RosBREEDSNP_SNP_AG_1621844_Lg17_01205_MAF40_967370_exon1AAAABBBAAABAABAAB--AAAAAABA--BBBBAAA-----BBAA-B--BBAABABABAB-AAAAB--B
RosBREEDSNP_SNP_CT_1638129_Lg17_01205_MAF50_369576_exon3ABBAABBAABBAABAAA--AAA---------A---ABAAAA--AB-A--AAA---BAABA-BBAABBAB
RosBREEDSNP_SNP_GA_1633790_Lg17_01205_MAF30_MDP0000200884_exon1--BBABBBBA--A-ABB--BABBAB----ABAA--ABBA------BAABB-----BABBABBAA-B--B
RosBREEDSNP_SNP_GA_1640875_Lg17_01205_MAF30_1658589_exon1ABBBBBBBABBBAB--BBBAAABAA----BBBBBABBBBBBBBBB-B--ABABB--AB--BAAB-A--B
RosBREEDSNP_SNP_TC_2032345_Lg17_00290_MAF20_155971_exon2--AABA--AAAAA-AAABAB--AAA--ABBAAAAABAABABAB-A--ABABB--AABBABAAAAAAABB
Alignments
Feature NameTypeLocationAnalysis
Chr17 chromosome Chr17:1907981..2125515. Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation