Mdo-HB-12-5

Haplotype Block Overview
Name Mdo-HB-12-5
Species Malus x domestica
Stock Haplotype [view all 427]
Haplotype [view all]
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr12chromosomeChr12:1732220..1763077 .Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotationn/a
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 9
Rome Beauty Law 4 5
Jonafree 4 9
Redfree 5 9
Spartan 4 9
Wagener 4 5
Worcester Pearmain 4 5
Tsugaru 5 9
Golden Delicious 4 5
Fuji 4 9
Empire 10 9
Gala 4 9
Honeycrisp 6 9
Elstar 4 9
Marshall McIntosh 10 4
Cripps Pink 5
Granny Smith 5 9
Jonathan 9
Ralls Janet 4
Delicious 9
Discovery 4 5
Prima 5
821 4
Fiesta 5 9
Ingrid Marie 9
Idared 5 9
Esopus Spitzenburg 9
Braeburn 4 9
Sansa 9
Lodi 5 9
James Grieve 9
Cripps Red 5
Burgundy 4 9
Akane 4 9
Ambrosia 4 9
Aurora Golden Gala 4 9
Beacon 4
Ben Davis 5 9
Cameo 4 9
Chinook 4 5
Clivia 9
Co-op 17 5 9
Co-op 18 4 9
Dayton 4 5
Delblush 4 5
Delcorf 4
Delorgue 4
Dolgo 20 4
Geheimrat Dr. Oldenburg 5 9
Duchess of Oldenburg 4 6
Early Cortland 10 5 9
Empress 4 9
F2 26829-2-2 5
Fantazja 10
Fireside 9
Fortune 9
Frostbite 4
Ginger Gold 4 9
GMAL 4327 4 9
GMAL 4328 4 9
GMAL 4329 4
GMAL 4332 9
Goodland 4 5
Haralson 9
Honeygold 4 9
Hudson 9
Jersey Black 2 4
Jonamac 4 9
Keepsake 4 9
Kerr 4 9
Lady Williams 10 5
Liberty 4 5
Linda 10 4
Liveland Raspberry 20 5
Longfield 22 5
Macoun 4
Malinda 4 9
Melba 10 20
Melrose 9
MN 1627 4 6
MN 1628 4 9
MN 1691 5 9
MN 1706 4 9
MN 1708 4 6
MN 1760 4 9
MN 1764 4
MN 1789 5 6
MN 1802 4
MN 1836 4 9
MN 1837 4 5
MN 1839 4 9
MN 1888 5 6
MN 1899 10 9
MN 1940 5 9
MN 2016 5 9
AA-44 10 5
Monroe 5 9
Montgomery 4 5
Nicola 5 9
NJ 31 4 9
NJ 53 13
Oriole 5 9
PRI 14-126 5
PRI 14-510 5
PRI 1661-2 4 5
PRI 54-12 5 9
PRI 855-102 9
Primula 10 9
Raritan 5
Regent 10 9
Russian Seedling 10 5
Sawa 10
Sciros 5 9
Sharon 10 4
Silken 4 9
Wildung 10 9
Splendour 5 9
State Fair 4 9
NJ 55 10 4
Co-op 29 5
Sunrise 4 9
Sweet Sixteen 4 9
Topaz 5 9
Vista Bella 13 9
Wealthy 4 9
Winesap 9
Winter Banana 5
Yellow Newtown 4
Yellow Transparent 5 9
0407-0001 4
0407-0005 4
0407-0006 4 5
0407-0007 5 9
0407-0008 4
0408-0003 4 9
0408-0004 5 9
0408-0005 4 5
0408-0007 4 5
0408-0008 4 9
0408-0010 4 5
0408-0011 4 9
0408-0014 4
0408-0015 4 9
0409-0022 6 9
0409-0024 6 9
0409-0028 4 9
0409-0030 4 9
0409-0032 4 9
0409-0035 4 9
0409-0036 9
0409-0038 4 6
0409-0039 6 9
0409-0040 9
0409-0043 4 9
0409-0045 4 6
0410-0002 5 9
0410-0003 4 5
0410-0005 4 9
0410-0006 9
0410-0010 9
0410-0011 4 5
0410-0012 9
0410-0013 9
0410-0015 4 9
0410-0017 4 5
0410-0018 4 5
0414-0010 5 6
0414-0015 5 6
0414-0017 5 6
0414-0018 4 9
0414-0019 4 6
0414-0020 4 6
0414-0021 4 6
0415-0001 4 6
0415-0004 4 9
0415-0005 4 9
0415-0011 4 6
0415-0012 4 6
0415-0013 4 9
0415-0014 6 9
0415-0016 4 6
0415-0017 5 6
0415-0019 5 9
0415-0020 5 6
0415-0025 5 6
AE_HCxJonf-145 9
AE_HCXJonf-148 4 6
AE_HCxJonf-157 4 9
AE_HCXJonf-162 4 9
AE_HCXJonf-168 4 6
AE_HCxJonf-175 4 9
AE_HCxJonf-183 9
AE_HCxJonf-185 9
AE0118-237 10 6
AE0118-238 9
AE0118-239 4 6
AE0118-240 10 6
AE0118-243 10 6
AE0118-244 10 6
AE0118-245 10 9
AE0118-246 10 9
AE0118-249 10 6
AE0206-159 5
AE0206-160 5
AE0206-161 4 5
AE0206-162 5
AE0206-163 5 9
AE0206-164 4 5
AE0206-165 5 9
AE0206-167 4 5
AE0206-168 4 9
AE0206-169 5 9
AE0206-170 4 9
AE0210-146 4 9
AE0210-147 4
AE0210-149 4 9
AE0210-150 4
AE0210-151 4 9
AE0210-152 4 5
AE0210-153 4
AE0210-154 4
AE0210-157 4
AE0210-158 4
AE0210-159 4
AE0210-162 4
AE0210-163 4 9
AE0210-164 4
AE0210-165 4 9
AE0210-166 4
AE0210-168 4
AE0210-169 4
AE0210-170 4
AE0210-171 4
AE0210-172 4
AE0210-173 4 9
AE0210-174 4
AE0213-175 4 9
AE0213-176 9
AE0213-177 9
AE0213-178 9
AE0213-179 9
AE0213-180 4 9
AE0213-181 9
AE0213-182 9
AE0213-183 4 9
AE0213-186 4 9
AE0213-187 4 9
AE0213-190 4 9
AE0213-193 4 9
AE0213-194 4 9
AE0213-195 9
AE0213-196 9
AE0213-197 4 9
AE0213-198 4 9
AE0213-199 9
AE0213-200 4 9
AE0213-201 4 9
AE0213-202 9
AE0213-205 4 9
AE0213-206 4 9
AE0251-325 4 5
AE0251-329 5 9
AE0251-330 4
AE0251-331 4 5
AE0251-342 4 9
AE0251-343 5 9
AE0406-239 6 9
AE0406-254 9
AE0406-258 6 9
AE0406-259 6 9
AE0406-264 9
AE0406-266 6 9
AE0406-271 4 9
AE0406-274 6 9
AE0406-278 4 6
AE0406-281 4 6
AE0406-286 9
AE0406-288 9
AE0406-289 6 9
AE0406-294 4 9
AE0406-298 6 9
Minneiska 5 6
NJ 303955 10
PRI 612-1 5 9
Arlet 4 5
Co-op 39 22 5
Pinova 4 9
Scired 5 9
Scifresh 4
0409-0025 4 6
0409-0026 4 6
0409-0027 4 9
0409-0031 6 9
0409-0033 6 9
0409-0047 6 9
G-14-050 4 5
G-14-052 5 9
G-14-054 4 5
G-14-055 4 5
G-14-056 4 5
G-14-057 5 9
G-14-059 5 9
G-14-060 4 5
G-14-061 4 9
G-14-062 9
G-14-064 4 5
G-14-065 4 9
G-14-069 9
G-14-067 9
G-14-068 5 9
G-14-071 9
G-14-073 9
G-14-074 4 9
G-14-075 5 9
G-14-076 4 9
G-14-077 4 5
G-14-078 5 9
G-14-080 4 9
G-09-232 4 9
G-09-233 4 9
G-09-234 4 9
G-09-235 9
G-09-236 4
G-09-237 4 9
G-09-238 9
G-09-239 9
G-09-240 4
G-09-241 4
G-09-242 4
G-09-243 4
G-09-245 4
G-09-246 4 9
G-09-258 9
G-09-259 4
G-09-260 9
G-09-261 4
G-09-262 4
G-09-263 4 9
G-09-264 4
G-09-265 4 9
G-09-266 4 9
G-09-267 4
G-09-268 4
0408-0021 5 9
Wijcik McIntosh 10 4
Beauty of Bath 4 9
Priam 5 9
Northern Spy 9
Co-op 15 5
MN 1702 4 9
WA 2 4 5
WA 5 5
Pitmaston Pineapple 6 9
0411-0011 4 5
0411-0017 4 5
0411-0023 4
AE0250-086 4 5
AE0250-087 4
AE0250-089 4 5
AE0250-090 4 9
AE0250-092 4 5
AE0250-093 4 5
AE0250-094 4 9
AE0250-095 5 9
Sonya 4
Co-op 38 5 9
AE0250-096 4 5
AE0250-327 5 9
Co-op 30 4 5
AE0211-036 4 9
G-07-039 4 9
PRI 14-152 4 5
PRI 47-176 5 9
G-07-041 9
BC-8S-27-43 4 5
AE0250-091 9
AE0250-097 6 9
AE0250-325 4 9
AE0250-326 4 9
AE0250-329 6 9
AE0250-333 6 9
AE0250-334 4 6
AE0250-335 4 9
AE0250-336 4 6
AE0250-338 4 6
AE0250-341 4 9
AE0211-038 4 9
AE0211-043 4 9
AE0211-045 9
AE0211-051 4 9
G-07-010 5 9
G-07-014 9
G-07-015 9
G-07-019 5 9
G-07-020 9
G-07-024 5 9
G-07-032 5 9
G-07-033 9
G-07-034 9
G-07-035 9
G-07-044 9
AE0211-053 9
AE0211-054 4 9
AE0250-088 5 6
AE0250-324 5 6
AE0250-328 5 9
AE0250-331 5 6
AE0250-332 5 6
AE0250-337 6 9
AE0250-339 5 9
Minnewashta 5 9
Autumn Crisp 5 9
G-14-066 5 9
Lu1-11-010 10 4
Lu1-11-013 4 9
Lu1-11-016 10 4
Lu1-11-017 10 4
Lu1-11-018 10 9
NJ 90 4
Lord Lambourne 5 9
Antonovka GH 4 9
Grimes Golden 2 4
Kidds Orange Red 9
Malus baccata Hansen #2 4
Malus baccata Jackii 4
Summerred 4 6
William's Pride 10 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-12-5Apple-RosBREED-3.9K-2019123.763.76
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 2345678910111213141516171819202122
GDsnp00116BAABA--BBB-ABB---AABA
RosBREEDSNP_SNP_GA_1868445_Lg12_00116_MAF40_MDP0000190886_exon9--BBBBBAB-ABBAB-----A
RosBREEDSNP_SNP_TC_1834083_Lg12_00116_MAF10_1653707_exon3--AABBAABAA----BAABBA