Mdo-HB-08-1

Haplotype Block Overview
Name Mdo-HB-08-1
Species Malus x domestica
Stock Haplotype [view all 422]
Haplotype [view all]
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:38961..314674 .Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotationn/a
Stock Haplotype
NameHaplotype
Cox's Orange Pippin 10 5
Rome Beauty Law 6
Jonafree 3 8
Redfree 3 8
Spartan 3
Wagener 13 14
Worcester Pearmain 5 7
Tsugaru 3 8
Golden Delicious 3
Fuji 3 7
Empire 3 7
Gala 3
Honeycrisp 3
Elstar 10 3
Marshall McIntosh 3 8
Cripps Pink 3
Granny Smith 7
Jonathan 3 8
Ralls Janet 3
Delicious 3 7
Discovery 5 6
Prima 3 5
821 5
Fiesta 10 8
Ingrid Marie 10 3
Idared 14 8
Esopus Spitzenburg 11 3
Braeburn 3 5
Sansa 3 8
Lodi 10 3
James Grieve 10 5
Cripps Red 3 7
Burgundy 3 8
Akane 7 8
Ambrosia 3
Aurora Golden Gala 3
Beacon 4
Ben Davis 3 7
Cameo 3
Chinook 3
Clivia 5 8
Co-op 17 3 7
Co-op 18 3 8
Dayton 3 5 6 8
Delblush 3
Delcorf 3
Delorgue 3 7
Dolgo 5
Geheimrat Dr. Oldenburg 3 8
Duchess of Oldenburg 3
Early Cortland 3 8
Empress 14 8
F2 26829-2-2 3 5
Fantazja 3 8
Fireside 3 8
Fortune 3 7
Frostbite 3 5
Ginger Gold 3
GMAL 4327 10 17
GMAL 4328 17 3
GMAL 4329 3 5
GMAL 4332 10 17
Goodland 10 8
Haralson 3
Honeygold 3
Hudson 3
Jersey Black 18 3
Jonamac 3 8
Keepsake 3 5
Kerr 3 5
Lady Williams 3 7
Liberty 3 8
Linda 3 8
Liveland Raspberry 23 3
Longfield 24 25
Macoun 3
Malinda 10 3
Mantet 5
Melba 8
MN 1627 3
MN 1628 3 5
MN 1691 3 8
MN 1706 3 8
MN 1708 3 5
MN 1760 3 8
MN 1764 3
MN 1789 3
MN 1802 3 5
MN 1836 5
MN 1837 3 8
MN 1839 3
MN 1888 3
MN 1899 5 8
MN 1940 3 8
MN 2016 3
AA-44 3 5
Monroe 6 8
Montgomery 10 9
Nicola 3
NJ 31 3 6
NJ 53 17 24
Oriole 3
PRI 14-126 3 5
PRI 16-144 3
PRI 1661-2 3
PRI 855-102 8
Primula 8
Raritan 31 7
Regent 3 8
Russian Seedling 17 32
Sawa 3 8
Sciros 3
Sharon 3 8
Silken 3
Wildung 3 8
Splendour 3
State Fair 3 5
NJ 55 3 5
Co-op 29 3
Sunrise 3
Sweet Sixteen 3
Topaz 5 8
Vista Bella 14 17
Wealthy 3 8
Winesap 7
Winter Banana 3
Yellow Newtown 3 8
Yellow Transparent 3 5
0407-0001 3
0407-0005 3 8
0407-0006 3
0407-0007 3 8
0407-0008 3 8
0408-0003 3
0408-0004 3
0408-0005 3
0408-0007 3 8
0408-0008 3 8
0408-0010 3 8
0408-0011 3 8
0408-0014 3 8
0408-0015 3
0409-0022 3
0409-0024 3
0409-0028 3
0409-0030 3
0409-0032 3
0409-0035 3
0409-0036 3
0409-0038 3
0409-0039 3
0409-0040 3
0409-0043 3
0409-0045 3
0410-0002 3 7
0410-0003 3 7
0410-0005 3 7
0410-0006 3 7
0410-0010 3 7
0410-0011 3 7
0410-0012 3 7
0410-0013 3 7
0410-0015 3 7
0410-0017 3 7
0410-0018 3 7
0414-0010 3 8
0414-0015 3 8
0414-0017 3
0414-0018 3
0414-0019 3
0414-0020 3
0414-0021 3
0415-0001 3 8
0415-0004 3 8
0415-0005 3
0415-0011 3
0415-0012 3 8
0415-0013 3 8
0415-0014 3 8
0415-0016 3
0415-0017 3
0415-0019 3 8
0415-0020 3
0415-0025 3 8
AE_HCxJonf-145 3 8
AE_HCXJonf-148 3 8
AE_HCxJonf-157 3
AE_HCXJonf-162 3
AE_HCXJonf-168 3
AE_HCxJonf-175 3 8
AE_HCxJonf-183 3
AE_HCxJonf-185 3 8
AE0118-237 3
AE0118-238 3 8
AE0118-239 3
AE0118-240 3 8
AE0118-243 3
AE0118-244 3 8
AE0118-245 3 8
AE0118-246 3 8
AE0118-249 3
AE0206-159 3 5
AE0206-160 3 5
AE0206-161 3 5
AE0206-162 3 5
AE0206-163 3 5
AE0206-164 3 5
AE0206-165 3
AE0206-167 3 5
AE0206-168 3 5
AE0206-169 3 5
AE0206-170 3 5
AE0210-146 3 5
AE0210-147 3
AE0210-149 3 5
AE0210-150 3
AE0210-151 3 5
AE0210-152 3 5
AE0210-153 3 5
AE0210-154 3 5
AE0210-157 3
AE0210-158 3 5
AE0210-159 3
AE0210-162 3
AE0210-163 3 5
AE0210-164 3
AE0210-165 3
AE0210-166 3 5
AE0210-168 3 5
AE0210-169 3 5
AE0210-170 3 5
AE0210-171 3
AE0210-172 3 5
AE0210-173 3
AE0210-174 3 5
AE0213-175 17 3
AE0213-176 10 3
AE0213-177 10 3
AE0213-178 10 3
AE0213-179 10 3
AE0213-180 17 3
AE0213-181 10 3
AE0213-182 10 3
AE0213-183 10 3
AE0213-186 17 3
AE0213-187 10 3
AE0213-190 10 3
AE0213-193 17 3
AE0213-194 17 3
AE0213-195 10 3
AE0213-196 10 3
AE0213-197 10 3
AE0213-198 3
AE0213-199 10 3
AE0213-200 10 3
AE0213-201 10 3
AE0213-202 10 3
AE0213-205 10 3
AE0213-206 10 3
AE0251-323 3
AE0251-325 3
AE0251-327 3
AE0251-329 3
AE0251-330 3
AE0251-331 3
AE0251-342 3
AE0251-343 3
AE0406-239 3
AE0406-254 3
AE0406-258 3
AE0406-259 3
AE0406-263 3
AE0406-264 3
AE0406-266 3
AE0406-271 3
AE0406-274 3
AE0406-278 3
AE0406-281 3
AE0406-286 3
AE0406-288 3
AE0406-289 3
AE0406-294 3
AE0406-298 3
Minneiska 3 5
NJ 303955 5
PRI 612-1 3
Arlet 3 8
Co-op 39 3 5
Pinova 3 8
Scired 3
Scifresh 3 5
0409-0025 3
0409-0026 3
0409-0027 3
0409-0031 3
0409-0033 3
0409-0047 3
G-14-050 3 8
G-14-052 3
G-14-054 3 8
G-14-055 3 8
G-14-056 3 8
G-14-057 3 8
G-14-060 3
G-14-062 3 8
G-14-064 3 8
G-14-065 3 8
G-14-069 3 8
G-14-068 3
G-14-071 3 8
G-14-073 3
G-14-075 3
G-14-076 3
G-14-077 3
G-14-080 3
G-09-232 3
G-09-233 3
G-09-234 3
G-09-235 3
G-09-236 3
G-09-237 3
G-09-238 3
G-09-239 3
G-09-240 3
G-09-241 3 5
G-09-242 3
G-09-243 3 5
G-09-245 3
G-09-246 3
G-09-258 3 5
G-09-259 3 5
G-09-260 3
G-09-261 3 5
G-09-262 3 5
G-09-263 3
G-09-264 3 5
G-09-265 3
G-09-266 3
G-09-267 3
G-09-268 3 5
0408-0021 3 8
Wijcik McIntosh 14 30
Beauty of Bath 6
Priam 5 8
Northern Spy 3
Co-op 15 3 6
MN 1702 3 5
WA 2 3
WA 5 3
Pitmaston Pineapple 3
0411-0011 3 8
0411-0017 8
AE0250-086 3
AE0250-087 3
AE0250-089 3
AE0250-090 3
AE0250-092 3
AE0250-093 3
AE0250-094 3
AE0250-095 3
Sonya 3
Co-op 38 3 7
AE0250-096 3 6
AE0250-327 3
Co-op 30 3 8
Jonagrimes 3
AE0211-036 3
G-07-039 3
G-07-041 3 8
BC-8S-27-43 3
AE0250-091 17 3
AE0250-097 10 3
AE0250-325 10 3
AE0250-326 10 3
AE0250-329 17 3
AE0250-333 10 3
AE0250-334 17 3
AE0250-335 10 3
AE0250-336 17 3
AE0250-338 10 3
AE0250-341 10 3
AE0211-038 3
AE0211-043 3
AE0211-045 3
AE0211-051 17 3
G-07-010 3 7
G-07-014 3 7
G-07-015 7
G-07-019 7 8
G-07-020 7 8
G-07-024 3 7
G-07-032 3 7
G-07-033 7 8
G-07-034 3 7
G-07-035 3 7
G-07-044 3 7
AE0211-053 3
AE0211-054 3 5
AE0250-088 3
AE0250-324 3 5
AE0250-328 3
AE0250-331 3
AE0250-332 3
AE0250-337 3
AE0250-339 3 5
Minnewashta 3 5
Autumn Crisp 3 8
G-14-066 3
Lu1-11-010 7 8
Lu1-11-013 3 7
Lu1-11-016 3 7
Lu1-11-017 3 7
Lu1-11-018 3 7
NJ 90 3
Lord Lambourne 10 5
Antonovka GH 10 5
Grimes Golden 3
Kidds Orange Red 10 3
Malus baccata Hansen #2 3 5
Malus baccata Jackii 4
Summerred 3
William's Pride 3 5
Map Positions
Haplotype BlockMap NameLinkage GroupStartStop
Mdo-HB-08-1Apple-RosBREED-3.9K-2019800
Projects
Project Name
RosBREED_Apple_CRS_Haplotype_2020
Haplotypes
Marker 23456789101112131415161718192021222324252627282930313233
RosBREEDSNP_SNP_CT_280679_Lg8_00301_MAF40_492288_exon1-B-A-BB-A---BB-A-BAABA--ABBABAA-
RosBREEDSNP_SNP_GA_250595_Lg8_00301_MAF20_1634556_exon2BBBBAAB-AABABBBBABA--BABBB--BBB-
RosBREEDSNP_SNP_GA_30021_Lg8-BBBBBABBAABA-AB-BB---ABBABBBAAA
RosBREEDSNP_SNP_TC_266256_Lg8_00301_MAF20_1674145_exon1-AAAAABAABABA-BB------AB--AABBAB