Mdo-HB-02-60

Haplotype Block Overview

Name	Mdo-HB-02-60
Species	Malus x domestica
Stock Haplotype	[view all 432]
Haplotype	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr02	chromosome	Chr02:34675740..35407165 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	5
Rome Beauty Law	26 5
Jonafree	4 5
Redfree	31 5
Spartan	13 18
Wagener	5
Worcester Pearmain	5 52
Tsugaru	5
Golden Delicious	4 5
Fuji	4 6
Empire	13 7
Gala	5
Honeycrisp	5 6
Elstar	4 5
Marshall McIntosh	18 7
Cripps Pink	4 5
Granny Smith	13 4
Jonathan	4 5
Ralls Janet	4
Delicious	13 6
Discovery	5 97
Prima	4 46
821	23
Fiesta	4 5
Ingrid Marie	5 6
Idared	4 5
Esopus Spitzenburg	4
Braeburn	38 6
Sansa	5
Lodi	4 6
James Grieve	4 5
Cripps Red	4
Burgundy	5 6
Akane	5
Ambrosia	13 4
Aurora Golden Gala	5 6
Beacon	61 62
Ben Davis	13 4 6
Cameo	5 6
Chinook	4 5
Clivia	5 85
Co-op 17	26 4
Co-op 18	18 94
Dayton	13 5 55
Delblush	13 5
Delcorf	68 7
Delorgue	5 7
Dolgo	113 69
Geheimrat Dr. Oldenburg	38 85
Duchess of Oldenburg	6 7
Early Cortland	13 6 7
Empress	13 18
F2 26829-2-2	26 5
Fantazja	18 6
Fireside	4 6
Fortune	4 5
Frostbite	5 6
Ginger Gold	4 6
GMAL 4327	4 50
GMAL 4328	4 50
GMAL 4329	4 50
GMAL 4332	13 50
Goodland	18 7
Haralson	5 6
Honeygold	4 5
Hudson	10 13
Jersey Black	26 3
Jonamac	18 4
Keepsake	5
Kerr	113 5
Lady Williams	15 4
Liberty	26 6
Linda	4 6
Liveland Raspberry	5 79
Longfield	6
Macoun	26 7
Malinda	5
Mantet	6
Melba	18 79
Melrose	5 6
MN 1627	4 6
MN 1628	5
MN 1691	18 6
MN 1706	81 82
MN 1708	5 6
MN 1760	5 6
MN 1764	5 6
MN 1789	18 6
MN 1802	18 5
MN 1836	5 6
MN 1837	18 6
MN 1839	4 6
MN 1888	6
MN 1899	18 6
MN 1940	13 18
MN 2016	5 6
AA-44	5
Monroe	5
Montgomery	114 4
Nicola	4 5
NJ 31	5
NJ 53	18 5
Oriole	5 6
PRI 14-126	4 5
PRI 14-510	26 4
PRI 1661-2	18 6
PRI 54-12	26 6
PRI 855-102	4
Primula	4 79
Raritan	5
Regent	18 5
Rubin	5
Russian Seedling	102 103
Sawa	18 4
Sciros	5 6
Sharon	6 7
Silken	18 4
Wildung	4 7
Splendour	4 6
State Fair	6
NJ 55	4 5
Co-op 29	4 5
Sunrise	18 26
Sweet Sixteen	10 5
Topaz	5
Vanda	5
Vista Bella	13 5
Wealthy	5 6
Winesap	12 13
Winter Banana	18 94
Yellow Newtown	10 55
Yellow Transparent	6 7
0407-0001	5
0407-0005	5 6
0407-0006	5 6
0407-0007	5 6
0407-0008	5 6
0408-0003	5
0408-0004	18 6
0408-0005	5 6
0408-0007	18 6
0408-0008	5
0408-0010	18 6
0408-0011	18 5
0408-0014	18 5
0408-0015	5
0409-0022	5 6
0409-0024	5 6
0409-0028	5
0409-0030	6
0409-0032	6
0409-0035	5
0409-0036	6
0409-0038	5 6
0409-0039	5
0409-0040	5
0409-0043	5 6
0409-0045	6
0410-0002	13 5
0410-0003	4 6
0410-0005	13 6
0410-0006	4 6
0410-0010	13 5
0410-0011	4 6
0410-0012	4 5
0410-0013	4 5
0410-0015	13 5
0410-0017	4 5
0410-0018	4 6
0414-0010	5
0414-0015	5
0414-0017	5 6
0414-0018	5
0414-0019	5 6
0414-0020	5
0414-0021	4 5
0415-0001	18 5
0415-0004	5 6
0415-0011	5 6
0415-0012	5 6
0415-0013	18 6
0415-0014	5 6
0415-0016	5 6
0415-0017	18 5
0415-0019	5 6
0415-0020	5
0415-0025	5
AE_HCxJonf-145	4 6
AE_HCXJonf-148	5 6
AE_HCxJonf-157	4 6
AE_HCXJonf-162	4 5
AE_HCXJonf-168	4 5
AE_HCxJonf-175	5 6
AE_HCxJonf-183	5
AE_HCxJonf-185	4 5
AE0118-237	5
AE0118-238	5 6
AE0118-239	6
AE0118-240	18 5
AE0118-243	5 6
AE0118-244	18 6
AE0118-245	18 6
AE0118-246	5
AE0118-249	18 5
AE0206-159	18 4
AE0206-160	18 4
AE0206-161	4 6
AE0206-162	5 6
AE0206-163	5 6
AE0206-164	5 6
AE0206-165	18 4
AE0206-167	18 5
AE0206-168	5 6
AE0206-169	18 5
AE0206-170	4 6
AE0210-146	26 50
AE0210-147	26 4
AE0210-149	18 50
AE0210-150	26 4
AE0210-151	18 4
AE0210-152	18
AE0210-153	18 4
AE0210-154	26 4
AE0210-157	26 50
AE0210-158	26 4
AE0210-159	18 4
AE0210-162	26 50
AE0210-163	18 50
AE0210-164	26 50
AE0210-165	18 50
AE0210-166	18 50
AE0210-168	26 50
AE0210-169	26 50
AE0210-170	18 50
AE0210-171	18 4
AE0210-172	26 50
AE0210-173	18 4
AE0210-174	26 50
AE0213-175	4 50
AE0213-176	4 50
AE0213-177	13 6
AE0213-178	50 6
AE0213-179	13 6
AE0213-180	13 6
AE0213-181	13 6
AE0213-182	13 6
AE0213-183	13 4
AE0213-186	4 50
AE0213-187	50 6
AE0213-190	13 6
AE0213-193	4 50
AE0213-194	4 50
AE0213-195	50 6
AE0213-196	50 6
AE0213-197	13 4
AE0213-198	4 54
AE0213-199	4 50
AE0213-200	13 4
AE0213-201	13 6
AE0213-202	13 4
AE0213-205	13 6
AE0213-206	50 6
AE0251-323	5
AE0251-325	10 5
AE0251-327	5
AE0251-329	4 5
AE0251-330	10 4
AE0251-331	10 4
AE0251-342	5
AE0251-343	4 5
AE0406-239	4 6
AE0406-254	4 6
AE0406-258	4 6
AE0406-259	4 6
AE0406-263	4 5
AE0406-264	4 6
AE0406-266	4 6
AE0406-271	4 6
AE0406-274	4 6
AE0406-278	4 5
AE0406-281	4 6
AE0406-286	18 6
AE0406-288	4 6
AE0406-289	4 6
AE0406-294	4 5
AE0406-298	18 6
Minneiska	18 5
NJ 303955	5
PRI 612-1	4 6
Arlet	4 5
Co-op 39	95 96
Pinova	5 85
Scired	5 6
Scifresh	38 5
0409-0025	5
0409-0026	5
0409-0027	6
0409-0031	5
0409-0033	5
0409-0047	5 6
G-14-050	5
G-14-052	5
G-14-054	4 85
G-14-055	4 85
G-14-056	4 85
G-14-057	5
G-14-059	5 85
G-14-060	4 5
G-14-061	5
G-14-062	5 85
G-14-064	5 85
G-14-065	4 5
G-14-069	5 85
G-14-067	5 85
G-14-068	5
G-14-071	4 5
G-14-073	5 85
G-14-074	4 5
G-14-075	5 85
G-14-076	4 5
G-14-077	5
G-14-078	5
G-14-080	4 5
G-09-232	38 4
G-09-233	38 6
G-09-234	38 4
G-09-235	38 4
G-09-236	38 4
G-09-237	4 6
G-09-238	6
G-09-239	4 6
G-09-240	4 6
G-09-242	6
G-09-243	4 6
G-09-245	38 6
G-09-246	38 6
G-09-258	38 6
G-09-259	38 6
G-09-260	38 6
G-09-261	6
G-09-262	38 4
G-09-263	4 6
G-09-264	38 4
G-09-265	38 4
G-09-266	38 6
G-09-267	6
G-09-268	6
0408-0021	18 6
Wijcik McIntosh	18 7
Beauty of Bath	97
Priam	4 5
Northern Spy	10 5
Co-op 15	18 4
MN 1702	4 6
WA 2	4 5
WA 5	4 6
Pitmaston Pineapple	38 5
0411-0011	5
0411-0017	5
0411-0023	5
AE0250-086	5
AE0250-087	4 5
AE0250-089	5
AE0250-090	4 5
AE0250-092	5
AE0250-093	5
AE0250-094	5
AE0250-095	5
Sonya	38 5
Co-op 38	26 5
AE0250-096	5 6
AE0250-327	5 6
Co-op 30	18 5
Jonagrimes	2 7
AE0211-036	4
G-07-039	13 5
PRI 14-152	4 5
PRI 47-176	26 5
G-07-041	4 5
BC-8S-27-43	4 5
AE0250-091	50 6
AE0250-097	4 6
AE0250-325	5 50
AE0250-326	4 6
AE0250-329	4 5
AE0250-333	4 6
AE0250-334	4 5
AE0250-335	5 50
AE0250-336	4 5
AE0250-338	5 50
AE0250-341	4 6
AE0211-038	4 50
AE0211-043	4
AE0211-045	4
AE0211-051	4 6
G-07-010	4 5
G-07-014	13 5
G-07-015	4 5
G-07-019	13 5
G-07-020	4 5
G-07-024	13 5
G-07-032	13 5
G-07-033	4 5
G-07-034	4 5
G-07-035	13 5
G-07-044	4 5
AE0211-053	4 6
AE0211-054	18 4
AE0250-088	5 6
AE0250-324	5 6
AE0250-328	18 5
AE0250-331	18 6
AE0250-332	5 6
AE0250-337	18 5
AE0250-339	6
Minnewashta	18 6
Autumn Crisp	4 5
G-14-066	4 85
Lu1-11-010	4
Lu1-11-013	18 4
Lu1-11-016	18 4
Lu1-11-017	18 6
Lu1-11-018	4
NJ 90	13 18
Lord Lambourne	5
Antonovka GH	6
Grimes Golden	2 4
Kidds Orange Red	5 6
Malus baccata Hansen #2	108 4
Malus baccata Jackii	108
Summerred	109 6
William's Pride	31 5

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-02-60	Apple-RosBREED-3.9K-2019	2	59.2	59.56

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114
GDsnp10007	B	A	A	B	A	A	-	-	A	A	B	A	A	B	A	A	B	B	B	A	B	A	A	B	B	A	A	B	A	B	A	B	B	-	-	B	A	-	-	A	A	A	-	A	A	A	-	-	A	A	B	A	A	B	A	A	A	B	A	A	B	A	A	A	B	-	-	A	A	A	-	-	A	A	B	-	B	A	-	A	A	B	A	A	B	B	A	B	B	A	B	A	A	A	B	B	B	A	A	A	A	A	A	A	A	A	A	B	A	B	A	A	A
RosBREEDSNP_SNP_AC_37999186_Lg2_10007_MAF30_514932_exon1	A	A	A	A	B	B	B	A	A	A	A	A	A	A	A	B	A	A	A	A	A	A	-	-	A	B	A	A	B	A	B	A	A	-	-	A	A	A	A	A	B	-	A	A	B	A	-	-	B	A	A	B	B	A	A	B	A	A	A	A	A	A	A	A	A	-	-	A	A	B	A	B	B	A	A	-	A	A	B	B	A	A	B	A	A	A	A	A	A	A	B	A	A	B	A	-	B	A	B	A	A	B	B	A	B	B	A	A	B	A	A	A	B
RosBREEDSNP_SNP_AG_38008622_Lg2_10007_MAF30_1629148_exon1	A	A	A	A	B	A	B	A	A	A	A	A	A	A	A	B	A	A	A	A	A	A	-	-	A	B	A	A	B	A	B	A	A	-	-	A	A	A	A	B	A	-	A	A	B	A	-	A	A	A	A	A	A	A	A	A	A	-	-	A	A	B	A	B	A	-	-	A	A	A	A	B	A	A	A	-	A	A	B	A	B	A	B	B	A	A	A	A	A	A	A	A	A	A	B	A	B	A	A	A	A	A	B	B	B	A	A	A	B	A	B	A	B
RosBREEDSNP_SNP_CA_2802483_Lg13_211756_MAF40_211756_exon1	-	-	B	B	A	B	A	B	B	A	B	A	B	B	B	A	B	B	B	B	B	B	A	B	B	A	B	B	A	B	A	-	-	-	-	B	A	B	A	B	A	-	B	A	A	A	-	B	B	B	-	B	B	B	A	B	B	B	B	B	A	-	-	A	B	-	-	-	-	B	B	A	-	A	B	-	-	-	A	A	A	B	A	A	B	-	-	B	B	A	A	B	B	A	B	B	A	B	B	B	B	A	B	A	B	A	B	B	A	A	A	A	A
RosBREEDSNP_SNP_CT_36473196_Lg2_00669_MAF30_MDP0000265993_exon1	-	-	B	B	A	A	A	B	A	-	-	A	B	A	B	A	B	-	-	B	-	-	-	-	A	A	B	B	-	A	A	A	B	A	B	B	A	B	A	A	B	-	-	A	-	-	-	-	B	-	-	-	A	B	A	B	A	B	B	B	A	-	-	-	-	A	B	A	B	-	B	A	-	-	-	-	B	A	A	A	A	B	A	B	-	-	-	B	A	B	A	B	B	A	B	B	A	-	B	B	B	B	B	B	A	B	B	B	A	A	-	B	A
RosBREEDSNP_SNP_GA_2802467_Lg13_211756_MAF40_211756_exon1	-	-	B	B	A	B	A	B	B	A	B	A	B	B	B	A	B	B	B	B	B	B	A	B	B	A	B	B	A	B	A	-	-	-	-	B	A	B	A	B	A	-	B	A	A	A	-	B	A	B	-	A	A	B	A	A	B	B	B	B	A	-	-	A	B	-	-	-	-	B	B	A	-	A	B	-	-	-	A	A	A	A	B	A	B	-	-	B	B	A	A	B	B	A	B	B	A	B	A	B	A	A	B	A	A	B	B	B	A	A	A	A	A
RosBREEDSNP_SNP_GA_38001769_Lg2_10007_MAF20_MDP0000293966_exon5	-	-	B	B	B	B	B	B	B	A	B	A	B	B	B	B	B	B	B	B	B	B	-	-	B	-	-	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	-	B	B	B	A	B	B	B	B	A	B	-	-	-	-	-	-	B	A	B	-	-	-	A	B	A	B	A	B	B	A	B	B	B	B	B	B	B	B	B	-	-	B	B	B	B	B	B	B	A	B	B	B	B	B	B	B	-	-	B	-	A	B
RosBREEDSNP_SNP_TC_36462247_Lg2_00669_MAF50_262678_exon2	A	A	A	A	B	B	B	A	B	B	B	B	A	B	-	-	A	B	A	B	-	-	-	-	B	B	A	A	B	B	B	B	A	-	-	-	B	A	B	A	B	-	-	B	B	B	-	-	A	A	B	A	B	A	B	A	B	A	A	B	A	A	B	-	-	-	-	A	B	B	A	B	B	-	-	-	A	B	B	B	B	A	B	A	A	A	A	B	A	A	A	B	A	A	B	A	B	A	A	A	A	A	A	A	A	B	A	A	B	B	A	B	B