Mdo-HB-04-1

Haplotype Block Overview

Name	Mdo-HB-04-1
Species	Malus x domestica
Stock Haplotype	[view all 425]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	10 8
Rome Beauty Law	2 7
Jonafree	10 2
Redfree	3 4
Spartan	10
Wagener	23 4
Worcester Pearmain	23 7
Tsugaru	2 22
Golden Delicious	2
Fuji	11 2
Empire	10 11
Gala	10 2
Honeycrisp	3 7
Elstar	2 7
Marshall McIntosh	10 8
Cripps Pink	2 7
Granny Smith	4 7
Jonathan	10 22
Delicious	10 11
Discovery	69 7
Prima	7 8
821	18 2
Fiesta	10 8
Ingrid Marie	7 8
Idared	10 23
Esopus Spitzenburg	22 23
Braeburn	11 7
Sansa	10
Lodi	28 32
James Grieve	10 8
Cripps Red	2 7
Burgundy	2 22
Akane	10 23
Ambrosia	11 2
Aurora Golden Gala	2
Beacon	50 51
Ben Davis	10 18 2 20
Cameo	11 2
Chinook	11 2
Clivia	10 22
Co-op 17	10 7
Co-op 18	58 69
Dayton	2 8
Delblush	2
Delorgue	10 3
Dolgo	56 58
Geheimrat Dr. Oldenburg	22 4
Duchess of Oldenburg	3 4
Early Cortland	18 32 8
Empress	10 23
F2 26829-2-2	2 7
Fantazja	10 22
Fireside	22 32
Fortune	2 23
Frostbite	7 8
Ginger Gold	2 32
GMAL 4327	2 4
GMAL 4328	11 2
GMAL 4329	2 4
GMAL 4332	2 4
Goodland	3 4
Haralson	22 7
Honeygold	2 7
Hudson	10 2
Jonamac	10
Keepsake	2 7
Kerr	58 7
Lady Williams	2 7
Liberty	10 3
Linda	10 22
Longfield	10 4
Macoun	10 23
Malinda	2 7
Mantet	10
Melba	8
Melrose	10
MN 1627	2 3
MN 1628	2 7
MN 1691	22 4
MN 1706	2 3
MN 1708	2
MN 1760	7
MN 1764	7
MN 1789	3 4
MN 1802	2 8
MN 1836	10 7
MN 1837	2 22
MN 1839	22 3
MN 1888	3 4
MN 1899	7
MN 1940	10 22
MN 2016	2 4
AA-44	23 4
Monroe	22 7
Montgomery	32 7
Nicola	10 2
NJ 31	2
NJ 53	23 8
Oriole	3 7
PCF-3-120	10 2
PRI 14-126	2
PRI 14-510	2 7
PRI 16-144	2
PRI 1661-2	10
PRI 54-12	3
PRI 855-102	10
Primula	2 8
Raritan	58 76
Regent	10 7
Russian Seedling	2
Sawa	22 8
Sciros	10 11
Silken	2 7
Wildung	23 32
Splendour	11 2
State Fair	10 22
NJ 55	2 8
Co-op 29	2
Sunrise	2 22
Sweet Sixteen	2 7
Topaz	2 8
Vista Bella	23 8
Wealthy	22 3
Winesap	10 9
Winter Banana	7 8
Yellow Newtown	2 23
Yellow Transparent	10 28
0407-0001	10 2
0407-0005	10 2
0407-0006	2
0407-0007	2
0407-0008	2
0408-0003	10 2
0408-0004	10 2
0408-0005	10 2
0408-0007	10 2
0408-0008	10 2
0408-0010	10 2
0408-0011	10 2
0408-0014	10 2
0408-0015	10 2
0409-0022	2 7
0409-0024	2 3
0409-0028	2 7
0409-0030	2 3
0409-0032	2 3
0409-0035	2 3
0409-0036	2 3
0409-0038	2 3
0409-0039	2 3
0409-0040	2 3
0409-0043	2 3
0409-0045	2 3
0410-0002	2 7
0410-0003	2 7
0410-0005	2 4
0410-0006	2 7
0410-0010	2 7
0410-0011	2 4
0410-0012	2 7
0410-0013	2 7
0410-0015	2 7
0410-0017	2 7
0410-0018	2 7
0414-0010	2 7
0414-0015	10 7
0414-0017	2 3
0414-0018	10 3
0414-0019	10 3
0414-0020	10 7
0414-0021	2 3
0415-0001	10 3
0415-0004	10 3
0415-0005	10 7
0415-0011	10 7
0415-0012	10 7
0415-0013	10 7
0415-0014	10 7
0415-0016	10 7
0415-0017	10 7
0415-0019	10 3
0415-0020	10 3
0415-0025	10 3
AE_HCxJonf-145	10 7
AE_HCXJonf-148	10 3
AE_HCxJonf-157	2 3
AE_HCXJonf-162	10 3
AE_HCXJonf-168	2 3
AE_HCxJonf-175	2 3
AE_HCxJonf-183	2 3
AE_HCxJonf-185	2 7
AE0118-237	7
AE0118-238	7
AE0118-239	3 7
AE0118-240	3 7
AE0118-243	7
AE0118-244	3 7
AE0118-246	10 7
AE0118-249	7
AE0206-159	10 4
AE0206-160	10 4
AE0206-161	11 22
AE0206-162	11 22
AE0206-163	10 22
AE0206-164	11 4
AE0206-165	10 4
AE0206-167	10 4
AE0206-168	11 4
AE0206-169	11 4
AE0206-170	10 22
AE0210-146	2 22
AE0210-147	2 4
AE0210-149	22 4
AE0210-150	22 4
AE0210-151	2 22
AE0210-152	2 4
AE0210-153	2
AE0210-154	2 4
AE0210-157	22 4
AE0210-158	2 4
AE0210-159	22 4
AE0210-162	2
AE0210-163	2 22
AE0210-164	2
AE0210-165	2
AE0210-166	22 4
AE0210-168	22 4
AE0210-169	22 4
AE0210-170	22 4
AE0210-171	2 4
AE0210-172	2 22
AE0210-173	22 4
AE0210-174	22 4
AE0213-175	2 32
AE0213-176	2 4
AE0213-177	32 4
AE0213-178	2 32
AE0213-179	32 4
AE0213-180	2 4
AE0213-181	32 4
AE0213-182	2 4
AE0213-183	32 4
AE0213-186	2 4
AE0213-187	2
AE0213-190	2 4
AE0213-193	32 4
AE0213-194	32 4
AE0213-195	32 4
AE0213-196	2 32
AE0213-197	32 4
AE0213-198	23 32
AE0213-199	2 32
AE0213-200	2 32
AE0213-201	2 4
AE0213-202	2 32
AE0213-205	32 4
AE0213-206	32 4
AE0251-323	11 2
AE0251-325	11 2
AE0251-327	10 2
AE0251-329	11 2
AE0251-330	10 2
AE0251-331	10 2
AE0251-342	10 2
AE0251-343	11 7
AE0406-239	2 3
AE0406-254	7
AE0406-258	3 7
AE0406-259	3 7
AE0406-263	2 3
AE0406-264	7
AE0406-266	2 3
AE0406-271	2 3
AE0406-274	2 7
AE0406-278	2 3
AE0406-281	7
AE0406-286	2 3
AE0406-288	2 3
AE0406-289	7
AE0406-294	3 7
AE0406-298	7
Minneiska	22 3
NJ 303955	8
PRI 612-1	10 2
Arlet	10 2
Co-op 39	23 70
Pinova	2 22
Scired	10 11
Scifresh	11 2
0409-0025	2 3
0409-0026	2 3
0409-0027	2 7
0409-0031	2 3
0409-0033	2 3
0409-0047	2 3
G-14-050	11 2
G-14-052	11 2
G-14-054	11 2
G-14-055	11 2
G-14-056	22
G-14-057	2 22
G-14-059	2 22
G-14-060	2 22
G-14-061	11 2
G-14-062	11 22
G-14-064	2 22
G-14-065	11 22
G-14-069	2 22
G-14-067	2 22
G-14-068	2 22
G-14-071	22
G-14-073	11 2
G-14-074	11 22
G-14-075	11 2
G-14-076	11 2
G-14-077	11 2
G-14-078	11 2
G-14-080	11 22
G-09-232	2 7
G-09-233	11 32
G-09-234	2 7
G-09-235	32 7
G-09-236	32 7
G-09-237	32 7
G-09-238	11 2
G-09-239	11 32
G-09-240	11 2
G-09-241	2 7
G-09-242	11 2
G-09-243	11 32
G-09-245	32 7
G-09-246	32 7
G-09-258	11 2
G-09-259	11 32
G-09-260	11 2
G-09-261	2 7
G-09-262	2 7
G-09-263	2 7
G-09-264	11 32
G-09-265	2 7
G-09-266	2 7
G-09-267	11 32
G-09-268	2 7
0408-0021	10 2
Wijcik McIntosh	10 8
Beauty of Bath	67 69
Priam	10 2
Northern Spy	2
Co-op 15	10 8
MN 1702	22 7
WA 2	10 11
WA 5	10 2
Pitmaston Pineapple	2 23
0411-0011	10
0411-0017	10
0411-0023	10 2
AE0250-086	11 7
AE0250-087	11 7
AE0250-089	11 7
AE0250-090	11 7
AE0250-092	11 7
AE0250-093	11 2
AE0250-094	11 7
AE0250-095	10 2
Sonya	2 7
Co-op 38	2 7
AE0250-096	2 4
AE0250-327	2 4
Co-op 30	10
AE0211-036	32 4
G-07-039	10 11
PRI 14-152	2
G-07-041	10 2
BC-8S-27-43	10 11
AE0250-091	2 7
AE0250-097	2 7
AE0250-325	2 7
AE0250-326	4 7
AE0250-329	2 3
AE0250-333	2 3
AE0250-334	2 7
AE0250-335	4 7
AE0250-336	3 4
AE0250-338	2 3
AE0250-341	2 7
AE0211-038	11 32
AE0211-043	2 32
AE0211-045	11 2
AE0211-051	11 32
G-07-010	10 7
G-07-014	10 7
G-07-015	10 4
G-07-019	10 4
G-07-020	10 7
G-07-024	10 7
G-07-032	10 4
G-07-033	10 7
G-07-034	10 7
G-07-035	10 4
G-07-044	10 7
AE0211-053	22 32
AE0211-054	2 4
AE0250-088	22 3
AE0250-324	3 4
AE0250-328	22 7
AE0250-331	22 3
AE0250-332	22 7
AE0250-337	22 3
AE0250-339	3 4
Minnewashta	22 4
Autumn Crisp	2 22
G-14-066	11 2
Lu1-11-010	2 8
Lu1-11-013	2 8
Lu1-11-016	11 8
Lu1-11-017	2 8
Lu1-11-018	2 8
NJ 90	10
Lord Lambourne	7 8
Antonovka GH	51 69
Kidds Orange Red	10 8
Malus baccata Hansen #2	32 8
Malus baccata Jackii	58
Summerred	43
William's Pride	51 64

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-04-1	Apple-RosBREED-3.9K-2019	4	0	0

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84
RosBREEDSNP_SNP_AG_17012386_Lg9_01648_MAF50_53337_exon1	A	A	B	-	-	B	B	-	B	B	-	-	-	-	A	B	B	-	A	-	A	A	-	-	-	-	B	A	B	A	A	-	-	B	A	A	B	-	-	-	-	A	B	-	B	A	-	-	A	B	A	B	A	B	-	-	B	-	-	-	A	B	A	-	A	B	A	A	A	-	A	B	A	A	A	B	-	-	A	A	B	A	B
RosBREEDSNP_SNP_AG_17016860_Lg9_01648_MAF10_MDP0000272135_exon1	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	B	-	A	A	B	B	A	A	A	A	A	B	A	B	B	A	A	-	-	A	A	-	B	A	A	A	A	-	A	B	-	-	A	A	-	-	B	A	-	B	A	-	-	-	B	A	B	B	A	A	A	A	A	A	B	A	B	B	B	A	A	B	A	A	A	B	A
RosBREEDSNP_SNP_CA_16809725_Lg9_MDP0000300208_MAF40_MDP0000300208_exon1	B	B	B	B	B	B	A	B	B	B	B	B	A	B	-	-	B	-	A	B	A	B	B	B	B	B	A	B	A	B	B	-	B	B	B	B	B	B	A	-	-	B	B	-	-	-	-	-	B	B	-	-	A	B	B	B	B	A	B	-	A	A	B	A	B	-	-	B	A	B	A	B	-	B	A	A	-	-	-	-	A	B	A
RosBREEDSNP_SNP_CT_16785260_Lg9_250957_MAF10_250957_exon1	B	A	A	A	B	B	B	B	B	B	B	A	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	A	B	A	A	B	A	B	B	A	B	-	B	B	B	-	-	A	B	B	-	-	A	B	B	B	-	-	-	A	B	-	B	-	-	-	B	B	A	A	B	B	B	B	B	B	B	B	B	B	-	-	B	A	B	B	B
RosBREEDSNP_SNP_CT_16979476_Lg9_01648_MAF20_MDP0000195966_exon1	B	B	B	B	B	B	B	A	B	A	B	B	B	B	B	B	B	B	B	-	B	B	B	B	B	A	A	B	A	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	B	-	-	B	B	B	A	B	B	A	B	B	B	B	B	B	B	B	B	B	-	-	B	B	B	-	-	-	-	A	B	-	-	-	-	B	B	A
RosBREEDSNP_SNP_CT_17000017_Lg9_01648_MAF20_MDP0000386963_exon1	B	B	B	B	B	A	B	B	B	B	-	-	B	B	B	A	B	-	B	-	B	B	B	A	-	B	B	A	-	-	B	-	B	-	-	-	-	-	B	B	B	B	B	-	B	B	A	B	B	A	B	B	-	-	-	B	B	-	B	-	B	B	B	B	A	B	B	B	B	A	B	B	B	B	B	B	-	-	B	B	B	B	A
RosBREEDSNP_SNP_CT_17006922_Lg9_01648_MAF30_843944_exon1	B	B	A	-	-	A	A	-	A	A	-	-	A	A	B	A	B	-	A	-	B	B	B	A	B	A	A	B	A	B	B	-	B	A	B	B	A	-	B	B	A	B	A	-	A	B	-	-	A	B	B	A	B	A	-	B	B	-	-	-	B	A	A	-	A	B	A	A	B	-	B	A	B	B	A	B	-	-	B	B	-	-	A

Alignments

Feature Name	Type	Location	Analysis
Chr04	chromosome	Chr04:411503..639773.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation