Mdo-HB-03-16

Haplotype Block Overview

Name	Mdo-HB-03-16
Species	Malus x domestica
Stock Haplotype	[view all 430]
Haplotype	[view all]

Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.

Stock Haplotype

Name	Haplotype
Cox's Orange Pippin	4
Rome Beauty Law	4 5
Jonafree	4
Redfree	16 4
Spartan	4 5
Wagener	5
Worcester Pearmain	4 5
Tsugaru	4
Golden Delicious	4
Fuji	4 7
Empire	4 5
Gala	4 5
Honeycrisp	4
Elstar	4
Marshall McIntosh	5 7
Cripps Pink	4 5
Granny Smith	4 5
Jonathan	13 4
Ralls Janet	3 7
Delicious	4 5
Discovery	5
Prima	4 7
821	11
Fiesta	4
Ingrid Marie	4 7
Idared	4 5
Esopus Spitzenburg	4 5
Braeburn	4 7
Sansa	13 4
Lodi	7 9
James Grieve	4 7
Cripps Red	4 5
Burgundy	16 5
Akane	13 5
Ambrosia	4
Aurora Golden Gala	4 5
Beacon	18 26
Ben Davis	12 4 5
Cameo	4
Chinook	4 5
Clivia	4 5
Co-op 17	4
Co-op 18	4
Dayton	13 4 7
Delblush	4
Delcorf	27
Delorgue	13 27
Dolgo	26 28
Geheimrat Dr. Oldenburg	5
Duchess of Oldenburg	5
Early Cortland	5 7 9
Empress	13 7
F2 26829-2-2	5
Fantazja	5 7
Fireside	5
Fortune	4
Frostbite	4 5
Ginger Gold	4 9
GMAL 4327	5
GMAL 4328	5
GMAL 4329	5
GMAL 4332	5
Goodland	5
Haralson	13 4
Honeygold	13 4
Jersey Black	3 7
Jonamac	13 5
Keepsake	4
Kerr	13 28
Lady Williams	5 8
Liberty	13 7
Linda	5
Liveland Raspberry	4 8
Longfield	12 18
Macoun	5 7
Malinda	4 5
Mantet	5
Melba	7 8
Melrose	13 5
MN 1627	4 5
MN 1691	5
MN 1706	35 8
MN 1708	4
MN 1760	4 5
MN 1764	4 5
MN 1789	5
MN 1802	4 5
MN 1836	4 5
MN 1837	4 5
MN 1839	4 5
MN 1888	5
MN 1899	4 5
MN 1940	13
MN 2016	4 5
AA-44	13 4
Monroe	13 5
Montgomery	13 7
Nicola	4 5
NJ 31	4
NJ 53	7 8
Oriole	13 4
PRI 14-126	4 5
PRI 14-510	4 5
PRI 16-144	4 5
PRI 1661-2	4 5
PRI 54-12	13 5
PRI 855-102	4
Primula	4 8
Raritan	35 8
Regent	4 7
Russian Seedling	5
Sawa	4 5
Sciros	4 5
Sharon	4 5
Silken	4
Wildung	5
Splendour	4 5
State Fair	13 5
NJ 55	4 7
Co-op 29	4 5
Sunrise	4 9
Sweet Sixteen	5
Topaz	4
Vista Bella	7
Wealthy	13 5
Winesap	4 5
Winter Banana	4 5
Yellow Newtown	42 43
Yellow Transparent	5 9
0407-0001	4 5
0407-0005	4 5
0407-0006	4
0407-0007	4 5
0407-0008	4 5
0408-0003	4
0408-0004	4 5
0408-0005	4 5
0408-0007	4 5
0408-0008	4 5
0408-0010	4 5
0408-0011	4
0408-0014	4
0408-0015	4
0409-0022	4
0409-0024	4
0409-0028	4
0409-0030	4 5
0409-0032	4
0409-0035	4 5
0409-0036	4
0409-0038	4 5
0409-0039	4 5
0409-0040	4 5
0409-0043	4
0409-0045	4
0410-0002	4 5
0410-0003	4 5
0410-0005	4
0410-0006	5
0410-0010	5
0410-0011	5
0410-0012	4 5
0410-0013	4 5
0410-0015	4 5
0410-0017	4
0410-0018	5
0414-0010	4
0414-0015	4
0414-0017	4
0414-0018	4
0414-0019	4
0414-0020	4
0414-0021	4
0415-0001	4
0415-0004	4
0415-0005	4
0415-0011	4
0415-0012	4
0415-0013	4
0415-0014	4
0415-0016	4
0415-0017	4
0415-0019	4
0415-0020	4
0415-0025	4
AE_HCxJonf-145	4
AE_HCXJonf-148	4
AE_HCxJonf-157	4
AE_HCXJonf-162	4
AE_HCXJonf-168	4 7
AE_HCxJonf-175	4
AE_HCxJonf-183	4
AE_HCxJonf-185	4
AE0118-237	4 7
AE0118-238	4 7
AE0118-239	4
AE0118-240	4
AE0118-243	4 7
AE0118-244	4 7
AE0118-245	4 7
AE0118-246	4 7
AE0118-249	4 7
AE0206-159	13 5
AE0206-160	13 5
AE0206-161	5
AE0206-162	13 4
AE0206-163	4 5
AE0206-164	4 5
AE0206-165	5
AE0206-167	5
AE0206-168	13 4
AE0206-169	13 5
AE0206-170	13 5
AE0210-146	4 5
AE0210-147	5 9
AE0210-149	5 9
AE0210-150	4 5
AE0210-151	5 9
AE0210-152	5 9
AE0210-153	4 5
AE0210-154	4 5
AE0210-157	4 5
AE0210-158	4 5
AE0210-159	5 9
AE0210-162	4 5
AE0210-163	4 5
AE0210-164	5 9
AE0210-165	4 5
AE0210-166	4 5
AE0210-168	4 5
AE0210-169	4 5
AE0210-170	5 9
AE0210-171	4 5
AE0210-172	5 9
AE0210-173	4 5
AE0210-174	5 9
AE0213-175	5 9
AE0213-176	5 9
AE0213-177	4 5
AE0213-178	5 9
AE0213-179	4 5
AE0213-180	4 5
AE0213-181	4 5
AE0213-182	4 5
AE0213-183	4 5
AE0213-186	4 5
AE0213-187	4 5
AE0213-190	5 9
AE0213-193	5 9
AE0213-194	5 9
AE0213-195	4 5
AE0213-196	4 5
AE0213-197	4 5
AE0213-198	4 9
AE0213-199	4 5
AE0213-200	4 5
AE0213-201	4 5
AE0213-202	4 5
AE0213-205	5 9
AE0213-206	5 9
AE0251-323	5
AE0251-325	4 5
AE0251-327	4 5
AE0251-329	4 5
AE0251-330	4 5
AE0251-331	5
AE0251-342	4 5
AE0251-343	4 5
AE0406-239	4
AE0406-254	4
AE0406-258	4
AE0406-259	4
AE0406-263	4
AE0406-264	4
AE0406-266	4
AE0406-271	4
AE0406-274	4
AE0406-278	4
AE0406-281	4
AE0406-286	4
AE0406-288	4
AE0406-289	4
AE0406-294	4
AE0406-298	4
Minneiska	4 5
NJ 303955	7
PRI 612-1	4
Arlet	4
Co-op 39	39 5
Pinova	4 5
Scired	4 5
Scifresh	4
0409-0025	4
0409-0026	4
0409-0027	4 5
0409-0031	4 5
0409-0033	4 5
0409-0047	4 5
G-14-050	4
G-14-052	4
G-14-054	4 5
G-14-055	4 5
G-14-056	4 5
G-14-057	4
G-14-059	4 5
G-14-060	4 5
G-14-061	4
G-14-062	4 5
G-14-064	4
G-14-065	4 5
G-14-069	4
G-14-067	4 5
G-14-068	4
G-14-071	4 5
G-14-073	4 5
G-14-074	4
G-14-075	4
G-14-076	4
G-14-077	4
G-14-078	4
G-14-080	4 5
G-09-232	4
G-09-233	4
G-09-234	4 7
G-09-235	7 9
G-09-236	4
G-09-237	4
G-09-238	4 9
G-09-239	4
G-09-240	4 9
G-09-241	4
G-09-242	7 9
G-09-243	4
G-09-245	4 9
G-09-246	7 9
G-09-258	7 9
G-09-259	4
G-09-260	4 7
G-09-261	4
G-09-262	4 7
G-09-263	4
G-09-264	4 7
G-09-265	4 9
G-09-266	4
G-09-267	4 7
G-09-268	7 9
0408-0021	4 5
Wijcik McIntosh	17 28
Beauty of Bath	38 5
Priam	13 4
Northern Spy	4 5
Co-op 15	4 5
MN 1702	5
WA 2	4 5
WA 5	5
Pitmaston Pineapple	4 5
0411-0011	4
0411-0017	4
0411-0023	4
AE0250-086	4 5
AE0250-087	5
AE0250-089	4 5
AE0250-090	5
AE0250-092	4 5
AE0250-093	5
AE0250-094	4 5
AE0250-095	4 5
Sonya	4
Co-op 38	4
AE0250-096	13 5
AE0250-327	13 5
Co-op 30	4
Jonagrimes	4 5
AE0211-036	5 9
G-07-039	12 13
PRI 14-152	4 5
PRI 47-176	4 5
G-07-041	13 4
BC-8S-27-43	4 5
AE0250-091	4 5
AE0250-097	4 5
AE0250-325	4 5
AE0250-326	4 5
AE0250-329	4 5
AE0250-333	4 5
AE0250-334	4 5
AE0250-335	4 5
AE0250-336	4 5
AE0250-338	4 5
AE0250-341	4 5
AE0211-038	5 9
AE0211-043	4 5
AE0211-051	4 5
G-07-010	4
G-07-014	13 4
G-07-015	13 5
G-07-019	4
G-07-020	13 5
G-07-024	4
G-07-032	4 5
G-07-033	13 4
G-07-034	4 5
G-07-035	4
G-07-044	13 5
AE0211-053	13 9
AE0211-054	5 9
AE0250-088	4 5
AE0250-324	13 4
AE0250-328	13 4
AE0250-331	13 4
AE0250-332	4 5
AE0250-337	4 5
AE0250-339	13 4
Minnewashta	13 5
Autumn Crisp	13 4
G-14-066	4 5
Lu1-11-010	7
Lu1-11-013	4 7
Lu1-11-016	7
Lu1-11-017	4 7
Lu1-11-018	4 7
NJ 90	4 7
Lord Lambourne	4 7
Antonovka GH	16 9
Grimes Golden	2 4
Kidds Orange Red	4 5
Malus baccata Hansen #2	26 7
Malus baccata Jackii	4 9
Summerred	5
William's Pride	7

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Mdo-HB-03-16	Apple-RosBREED-3.9K-2019	3	16.82	16.82

Projects


Project Name
RosBREED_Apple_CRS_Haplotype_2020

Haplotypes

Marker	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45
RosBREEDSNP_SNP_AG_9544220_Lg3_02195_MAF50_1685314_exon2	B	A	A	B	A	A	A	A	B	A	B	B	-	-	A	B	A	A	B	-	-	A	B	A	B	-	A	A	-	-	-	-	-	A	A	A	A	A	B	A	B	A	-	-
RosBREEDSNP_SNP_CA_9464559_Lg3_02195_MAF10_1626126_exon1	B	B	B	B	B	B	B	B	B	B	B	A	B	B	B	B	B	A	B	-	B	B	-	-	B	-	B	B	-	-	A	-	-	B	B	B	-	A	A	B	B	B	-	B
RosBREEDSNP_SNP_CT_9446063_Lg3_02195_MAF20_1633815_exon6	-	-	B	B	-	A	B	B	B	B	A	B	B	A	A	B	B	B	A	B	-	A	-	-	B	-	A	-	B	A	B	-	-	A	-	-	-	B	-	B	B	A	-	B
RosBREEDSNP_SNP_CT_9462180_Lg3_02195_MAF20_1637727_exon10	-	-	B	B	-	A	A	B	B	B	A	B	B	A	A	B	B	A	B	B	-	B	-	-	B	-	A	A	B	A	B	B	A	B	B	A	-	B	B	A	A	B	-	B
RosBREEDSNP_SNP_CT_9532664_Lg3_02195_MAF50_MDP0000680806_exon1	A	B	B	A	null	null	B	null	-	-	null	A	-	-	B	null	A	null	A	-	-	B	A	B	B	B	A	null	B	null	-	-	-	null	B	B	null	B	A	null	null	A	A	B

Alignments

Feature Name	Type	Location	Analysis
Chr03	chromosome	Chr03:8129581..32591592.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation