RosBREED_Apple_CRS_Haplotype_2020 | GDR

Project Overview

Project Overview

Project Name	RosBREED_Apple_CRS_Haplotype_2020
Description	The apple ‘Crop Reference Sets’, consisting of 421 individuals from three apple breeding programs (Washington State University, the University of Minnesota, and Cornell University), represents US breeding germplasm for the RosBREED project, were genotyped using the Illumina Infinium 8K apple SNP array and haplotypes were determined. The genotype calls of 18 additional apple individuals genotyped with the 20K SNP array in the FruitBreedomics project or genotyped with the 8K SNP array at KU Leuven, Belgium were added to the data set to complete genotypic data of key ancestors.
Crop	apple
Project type	genotype
Sub type	haplotype

Genetic Maps

This project contains 3 Maps:


Name
Sweet Cherry-RosBREED-1.6K-2019
Peach-RosBREED-4K-2019
Apple-RosBREED-3.9K-2019

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1

Stocks

This project contains 1,263 stocks:


Name	Type
MN 1899	accession
MN 1937	accession
MN 1940	accession
MN 1964	accession
MN 1971	accession
MN 2000	accession
MN 2016	accession
Monroe	accession
Nicola	accession
NJ 110037	accession
NJ 117637	accession
NJ 12	accession
NJ 123249	accession
NJ130o	accession
NJ 136055	accession
NJ 14	accession
NJ 19237	accession
NJ 27	accession
NJ 31	accession
NJ 35437	accession
NJ 35934	accession
NJ 37848	accession
NJ 53	accession
NJ 60837	accession
NJ 67634	accession

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5

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Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.