RosBREED_Apple_CRS_Haplotype_2020 | GDR

Project Overview

Project Overview

Project Name	RosBREED_Apple_CRS_Haplotype_2020
Description	The apple ‘Crop Reference Sets’, consisting of 421 individuals from three apple breeding programs (Washington State University, the University of Minnesota, and Cornell University), represents US breeding germplasm for the RosBREED project, were genotyped using the Illumina Infinium 8K apple SNP array and haplotypes were determined. The genotype calls of 18 additional apple individuals genotyped with the 20K SNP array in the FruitBreedomics project or genotyped with the 8K SNP array at KU Leuven, Belgium were added to the data set to complete genotypic data of key ancestors.
Crop	apple
Project type	genotype
Sub type	haplotype

Genetic Maps

This project contains 3 Maps:


Name
Sweet Cherry-RosBREED-1.6K-2019
Peach-RosBREED-4K-2019
Apple-RosBREED-3.9K-2019

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1

Stocks

This project contains 1,263 stocks:


Name	Type
Red Baron	accession
Regent	accession
Rubin	accession
Sawa	accession
Scifresh	accession
Scired	accession
Sciros	accession
Sharon	accession
sibling of Liberty	accession
Silken	accession
Wildung	accession
Nevson	accession
Splendour	accession
State Fair	accession
NJ 55	accession
Co-op 29	accession
Sundowner	accession
Sunrise	accession
Sweet Sixteen	accession
Topaz	accession
Vanda	accession
Vista Bella	accession
Wealthy	accession
Williams	accession
Yellow Transparent	accession

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7

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Publications


Year	Publication
2019	Vanderzande S, Howard NP, Cai L, Da Silva Linge C, Antanaviciute L, Bink MCAM, Kruisselbrink JW, Bassil N, Gasic K, Iezzoni A, Van de Weg E, Peace C. High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow. PloS one. 2019; 14(6):e0210928.