jg11413.t1

Transcript Overview


Name	jg11413.t1
Unique Name	jg11413.t1_AB-NIAB_v1
Type	mRNA
Organism	Rubus idaeus ()
Sequence length	1536

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
HiC_scaffold_6_RagTag	chromosome	HiC_scaffold_6_RagTag:42603170..42606788 -	Rubus idaeus cv. 'Autumn Bliss' NIAB Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Rubus idaeus cv. 'Autumn Bliss' NIAB Genome v1.0 Assembly & Annotation	2023-07-07
Blastp of Rubus idaeus cv. 'Autumn Bliss' NIAB v1.0 proteins vs UniProt TrEMBL	2023-07-11
InterProScan Analysis for Rubus idaeus cv. 'Autumn Bliss' NIAB v1.0 proteins	2023-07-11
Blastp of Rubus idaeus cv. 'Autumn Bliss' NIAB v1.0 proteins vs UniProt Swissprot	2023-07-11
Blastp of Rubus idaeus cv. 'Autumn Bliss' NIAB v1.0 proteins vs Araport11	2023-07-11

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
rabrabL173	Rubus idaeus cv. 'Autumn Bliss' NIAB Genome v1.0 Assembly & Annotation	Rubus idaeus
rabrahR355	Rubus argutus Hillquist Genome v1.0 Assembly & Annotation	Rubus argutus
rabroR292	Rubus occidentalis Whole Genome v3.0 Assembly & Annotation	Rubus occidentalis
rabrjjR288	Rubus idaeus 'Joan J' Genome v2.0 Assembly & Annotation	Rubus idaeus
rabriaR287	Rubus idaeus Anitra Genome v1.0 Assembly & Annotation	Rubus ideaus
rabrmjR332	Rubus idaeus cv. 'Malling Jewel' NIAB Genome v1.0 Assembly & Annotation	Rubus idaeus
rabrblR0709	Rubus L. subgenus Rubus Watson Genome v1.0 Assembly & Annotation	Rubus L. subgenus Rubus Watson
rabrblR0814	Rubus L. subgenus Rubus Watson Genome v1.0 Assembly & Annotation	Rubus L. subgenus Rubus Watson
rabrblR0853	Rubus L. subgenus Rubus Watson Genome v1.0 Assembly & Annotation	Rubus L. subgenus Rubus Watson
rabrblR0862	Rubus L. subgenus Rubus Watson Genome v1.0 Assembly & Annotation	Rubus L. subgenus Rubus Watson

Orthologs


Gene/Transcript	Assembly	Species
Ra_g29663.t1	Rubus argutus Hillquist Genome v1.0 Assembly & Annotation	Rubus argutus
Ro06_G13343	Rubus occidentalis Whole Genome v3.0 Assembly & Annotation	Rubus occidentalis
Rubwa_g25643.t1	Rubus L. subgenus Rubus Watson Genome v1.0 Assembly & Annotation	Rubus L. subgenus Rubus Watson
g27666.t1	Rubus idaeus Anitra Genome v1.0 Assembly & Annotation	Rubus ideaus

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
jg11259.t1	Rubus idaeus cv. 'Autumn Bliss' NIAB Genome v1.0 Assembly & Annotation	Rubus idaeus
jg16718.t1	Rubus idaeus cv. 'Malling Jewel' NIAB Genome v1.0 Assembly & Annotation	Rubus idaeus
Rid.06g282910.m1	Rubus idaeus 'Joan J' Genome v2.0 Assembly & Annotation	Rubus idaeus

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jg11413	jg11413_AB-NIAB_v1	Rubus idaeus	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jg11413.t1_AB-NIAB_v1	jg11413.t1_AB-NIAB_v1	Rubus idaeus	polypeptide
jg11413.t1_AB-NIAB_v1	jg11413.t1_AB-NIAB_v1-protein	Rubus idaeus	polypeptide

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
jg11413.t1.stop1	jg11413.t1.stop1_AB-NIAB_v1	Rubus idaeus	stop_codon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
jg11413.t1.CDS1	jg11413.t1.CDS1_AB-NIAB_v1	Rubus idaeus	CDS
jg11413.t1.CDS2	jg11413.t1.CDS2_AB-NIAB_v1	Rubus idaeus	CDS
jg11413.t1.CDS3	jg11413.t1.CDS3_AB-NIAB_v1	Rubus idaeus	CDS
jg11413.t1.CDS4	jg11413.t1.CDS4_AB-NIAB_v1	Rubus idaeus	CDS
jg11413.t1.CDS5	jg11413.t1.CDS5_AB-NIAB_v1	Rubus idaeus	CDS
jg11413.t1.CDS6	jg11413.t1.CDS6_AB-NIAB_v1	Rubus idaeus	CDS
jg11413.t1.CDS7	jg11413.t1.CDS7_AB-NIAB_v1	Rubus idaeus	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
jg11413.t1.exon1	jg11413.t1.exon1_AB-NIAB_v1	Rubus idaeus	exon
jg11413.t1.exon2	jg11413.t1.exon2_AB-NIAB_v1	Rubus idaeus	exon
jg11413.t1.exon3	jg11413.t1.exon3_AB-NIAB_v1	Rubus idaeus	exon
jg11413.t1.exon4	jg11413.t1.exon4_AB-NIAB_v1	Rubus idaeus	exon
jg11413.t1.exon5	jg11413.t1.exon5_AB-NIAB_v1	Rubus idaeus	exon
jg11413.t1.exon6	jg11413.t1.exon6_AB-NIAB_v1	Rubus idaeus	exon
jg11413.t1.exon7	jg11413.t1.exon7_AB-NIAB_v1	Rubus idaeus	exon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
jg11413.t1.intron1	jg11413.t1.intron1_AB-NIAB_v1	Rubus idaeus	intron
jg11413.t1.intron2	jg11413.t1.intron2_AB-NIAB_v1	Rubus idaeus	intron
jg11413.t1.intron3	jg11413.t1.intron3_AB-NIAB_v1	Rubus idaeus	intron
jg11413.t1.intron4	jg11413.t1.intron4_AB-NIAB_v1	Rubus idaeus	intron
jg11413.t1.intron5	jg11413.t1.intron5_AB-NIAB_v1	Rubus idaeus	intron
jg11413.t1.intron6	jg11413.t1.intron6_AB-NIAB_v1	Rubus idaeus	intron

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
jg11413.t1.start1	jg11413.t1.start1_AB-NIAB_v1	Rubus idaeus	start_codon

Homology

[Close]

BLAST of jg11413.t1 vs. ExPASy TrEMBL
Match: A0A2P6S0D3_ROSCH (Protein JASON OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0152321 PE=4 SV=1)

HSP 1 Score: 905.975 bits (2340), Expect = 0.000e+0
Identity = 447/511 (87.48%), Postives = 471/511 (92.17%), Query Frame = 0

Query:    1 MLCFNRELGFVCRSVLGFLDRSISGAMGCFFGCFRVRDDRHLRSRPHLVSQSSRSEVVISRNRLSSLFLDEEKGDSPSTDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSGIGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPNPEGISQWNVLKEEDSNSHGFCGEPSESLKQSGNATPISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF 511
            MLCFNRELGFVCRSVL FLDRS++GAMGCFFGCFR RDDRHLRSRPHLVSQ SRS  V+S+NRLSSLFL EE+GDSP+ DRESP     +IDKELKNEAKFLKACGT+VETPVE+RKAS KL GSPHHDRDSEPSKFNSWLPNTSIK LQQENQPEQPPTPVKL EEWGKG   SEHTPISYE+NQ+ TG  S+SSTEGSG+GTDSSVKIHSN+AENT T TSP  SATDVQCRG+SVRFECDFDTASSKGSSSGNC+RS KIAETPGKQ  SKYS YPTPLTLS+EMQTPGTV+P+SQRTFPNGKSRIRSQYVYSVPNPEGIS+WNVL EEDSNSHGF GEPSESLKQSGNATPISEEG KEISSGK+ + ES MSSW KPVTSTQDDNNLKLG+ASGRNRYFGRTPGDRPIIGLVATHWNEDD TRISPKWWDG GIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRK+I GMPIVFDENEESDTALSQLQSSSQPKSVVSF
Sbjct:    1 MLCFNRELGFVCRSVLRFLDRSVAGAMGCFFGCFRDRDDRHLRSRPHLVSQPSRSGAVVSQNRLSSLFLAEERGDSPARDRESP-----QIDKELKNEAKFLKACGTIVETPVEIRKAS-KLIGSPHHDRDSEPSKFNSWLPNTSIKKLQQENQPEQPPTPVKLFEEWGKG---SEHTPISYETNQQGTGRSSLSSTEGSGLGTDSSVKIHSNRAENTVTLTSPLDSATDVQCRGKSVRFECDFDTASSKGSSSGNCSRSAKIAETPGKQGTSKYSDYPTPLTLSDEMQTPGTVYPSSQRTFPNGKSRIRSQYVYSVPNPEGISRWNVLTEEDSNSHGFSGEPSESLKQSGNATPISEEGQKEISSGKDLQAESRMSSWQKPVTSTQDDNNLKLGEASGRNRYFGRTPGDRPIIGLVATHWNEDDATRISPKWWDGKGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKNIGGMPIVFDENEESDTALSQLQSSSQPKSVVSF 502

[Close]

BLAST of jg11413.t1 vs. ExPASy TrEMBL
Match: A0A6P5TCG7_PRUAV (Protein JASON isoform X1 OS=Prunus avium OX=42229 GN=LOC110765911 PE=4 SV=1)

HSP 1 Score: 786.949 bits (2031), Expect = 0.000e+0
Identity = 401/517 (77.56%), Postives = 438/517 (84.72%), Query Frame = 0

Query:    1 MLC--FNRELGFVCRSVLGFLDRSISGAMGCFFGCFRVRDDRHLRSRPHLVSQSSR---SEVVISRNRLSSLFLDEEKGDSPSTDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSGIGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPNP-EGISQWNVLKEEDSNSHGFCGEPSESLKQSGNATPISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF 511
            MLC   +RELG +CRSVL FLDRS+SGAMGCFFGCFRV+DDRHLRSRPHLVSQSSR   +EVVIS+NRLSSLF  EE+  SPS DRESP YG+P+IDKEL+NEAKFLKACGTLVETPVE+RKASSKLNGSPHHDR SEP KFNSWLPNTSIK LQQE+QP+QP TP+KL EEWGKG   SEHTP S  SNQK+TG ISISSTEGSGI TDS+VK             + S+S  DVQCR ++VRFECD DT SS+GSSS N +RS K++ETPGKQSISK S YPTPLTLS+EMQTPGTVFPA+   FPNGK+RIRSQYVY+V NP EGISQW ++K+EDSNS G  GE  ESL QSGNATPISE G KE SSG+EF +ESS+SSWLKPV   +DDNN   G   GR R+FGRTPGDRPIIGLVATHWNED+PTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEG PIVFDE EESDTALSQLQSSSQPKSVVSF
Sbjct:    1 MLCSLLDRELGLLCRSVLRFLDRSVSGAMGCFFGCFRVKDDRHLRSRPHLVSQSSRNNQTEVVISQNRLSSLFSAEEREGSPSKDRESPCYGSPQIDKELRNEAKFLKACGTLVETPVEIRKASSKLNGSPHHDRGSEPPKFNSWLPNTSIKQLQQEDQPDQPLTPIKLGEEWGKGSRPSEHTPSSM-SNQKNTGGISISSTEGSGIVTDSTVK-------------TGSISTPDVQCRSKAVRFECDIDTNSSRGSSSENYSRSAKVSETPGKQSISKPSVYPTPLTLSDEMQTPGTVFPANLGNFPNGKARIRSQYVYAVQNPVEGISQWKLMKDEDSNSQGLSGELRESLNQSGNATPISEVGAKETSSGQEFNVESSLSSWLKPVN--RDDNNQNFGYVPGRTRHFGRTPGDRPIIGLVATHWNEDEPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGKPIVFDETEESDTALSQLQSSSQPKSVVSF 501

[Close]

BLAST of jg11413.t1 vs. ExPASy TrEMBL
Match: A0A251Q1U6_PRUPE (Protein JASON OS=Prunus persica OX=3760 GN=PRUPE_3G178400 PE=4 SV=1)

HSP 1 Score: 781.171 bits (2016), Expect = 0.000e+0
Identity = 397/517 (76.79%), Postives = 436/517 (84.33%), Query Frame = 0

Query:    1 MLC--FNRELGFVCRSVLGFLDRSISGAMGCFFGCFRVRDDRHLRSRPHLVSQSSR---SEVVISRNRLSSLFLDEEKGDSPSTDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSGIGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPNP-EGISQWNVLKEEDSNSHGFCGEPSESLKQSGNATPISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF 511
            MLC   +REL  +CRSVL FLDRS+SGAMGCFFGCFRV+DDRHLRSRPHLVSQSSR   +EVVIS+NRLSSLF  EE+  SPS DRESP YG+P+IDKEL+NEAKFLKACGTLVETPVE+RKASSKLNGSPHHDR SEP KFNSWLPNTSIK LQQE+QP+QP TP+KL EEWGKG   SEHTP S  SNQ++TG ISISSTEGSGI TDS+VK  S             +S  DVQCR ++VRFECD +T SS+GSSS N +RS K++ETPGKQSISK S YPTPLTLS+EMQTPGTVFPA+   FPNGK+RIRSQYVY+V NP EGISQW ++K+ED+NS G  GE  ESL QSGNATPISE G KE SSG+EF +ESS+SSWLKPV   +DDNN   G   GR R+FGRTPGDRPIIGLVATHWNED+PTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEG PIVFDE EESDTALSQLQSSSQPKSVVSF
Sbjct:    1 MLCSLLDRELRLLCRSVLRFLDRSVSGAMGCFFGCFRVKDDRHLRSRPHLVSQSSRNNQTEVVISQNRLSSLFSAEEREGSPSKDRESPCYGSPQIDKELRNEAKFLKACGTLVETPVEIRKASSKLNGSPHHDRGSEPPKFNSWLPNTSIKQLQQEDQPDQPLTPIKLGEEWGKGSRRSEHTPSSM-SNQQNTGGISISSTEGSGIVTDSTVKTES-------------ISTPDVQCRSKAVRFECDINTNSSRGSSSENYSRSAKVSETPGKQSISKPSVYPTPLTLSDEMQTPGTVFPANLGNFPNGKARIRSQYVYAVQNPVEGISQWKLMKDEDTNSQGLSGELRESLNQSGNATPISEVGAKETSSGQEFNVESSLSSWLKPVN--RDDNNQNFGYVPGRTRHFGRTPGDRPIIGLVATHWNEDEPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGKPIVFDETEESDTALSQLQSSSQPKSVVSF 501

[Close]

BLAST of jg11413.t1 vs. ExPASy TrEMBL
Match: A0A5E4FNY3_PRUDU (PREDICTED: JASON OS=Prunus dulcis OX=3755 GN=ALMOND_2B021065 PE=4 SV=1)

HSP 1 Score: 779.63 bits (2012), Expect = 0.000e+0
Identity = 396/517 (76.60%), Postives = 436/517 (84.33%), Query Frame = 0

Query:    1 MLC--FNRELGFVCRSVLGFLDRSISGAMGCFFGCFRVRDDRHLRSRPHLVSQSSR---SEVVISRNRLSSLFLDEEKGDSPSTDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSGIGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPNP-EGISQWNVLKEEDSNSHGFCGEPSESLKQSGNATPISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF 511
            MLC   +RELG +CRSVL FLDRS+SGAMGCFFGCFRV+DDRHL SRPHLVSQSSR   +EVVIS+NRLSSLF  EE+  SPS DRESP YG+P++DKEL+NEAKFLKACGTLVETPVE+RKASSKLNGSPHHDR SEP KFNSWLPNTSIK LQQE+QP+QP TP+KL EEWGKG   SEHTP S  SNQ++TG ISISSTEGSGI TDS+VK  S             +S  DVQCR ++VRFECD +T SS+GSSS N +RS K++ETPGKQSISK S YPTPLTLS+EMQTPGTVFPA+   FPNGK+RIRSQYVY+V NP EGISQW ++K+ED+NS G  GE  ESL QSGNATPISE G KE SSG+EF +ESS+SSWLKPV   +DDNN   G   GR R+FGRTPGDRPIIGLVATHWNED+PTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEG PIVFDE EESDTALSQLQSSSQPKSVVSF
Sbjct:    1 MLCSLLDRELGLLCRSVLRFLDRSVSGAMGCFFGCFRVKDDRHLGSRPHLVSQSSRNNQTEVVISQNRLSSLFSAEEREGSPSKDRESPCYGSPQMDKELRNEAKFLKACGTLVETPVEIRKASSKLNGSPHHDRGSEPPKFNSWLPNTSIKQLQQEDQPDQPLTPIKLGEEWGKGSRRSEHTPSSM-SNQQNTGGISISSTEGSGIVTDSTVKTES-------------ISTPDVQCRSKAVRFECDINTNSSRGSSSENFSRSAKVSETPGKQSISKPSVYPTPLTLSDEMQTPGTVFPANLGNFPNGKARIRSQYVYAVQNPVEGISQWKLMKDEDTNSQGLSGELRESLNQSGNATPISEVGAKETSSGQEFNVESSLSSWLKPVN--RDDNNQNFGYVPGRTRHFGRTPGDRPIIGLVATHWNEDEPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGKPIVFDETEESDTALSQLQSSSQPKSVVSF 501

[Close]

BLAST of jg11413.t1 vs. ExPASy TrEMBL
Match: A0A6J5WXM4_PRUAR (Protein JASON OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS21965 PE=4 SV=1)

HSP 1 Score: 740.725 bits (1911), Expect = 0.000e+0
Identity = 377/489 (77.10%), Postives = 413/489 (84.46%), Query Frame = 0

Query:   27 MGCFFGCFRVRDDRHLRSRPHLVSQSSR---SEVVISRNRLSSLFLDEEKGDSPSTDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSGIGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPNP-EGISQWNVLKEEDSNSHGFCGEPSESLKQSGNATPISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF 511
            MGCFFGCFRV+DDRHLRSRPHLVSQSSR   +EVVIS+NRLSSLF  EE+  SPS DRESP YG+P+IDKEL+NEAKFLKACGTLVETPVE+RKASSKLNGSPHHDR SEP KFNSWLPNTSIK LQQE+QP+QP TP+KL EEWGKG   S++TP S  SNQ++TG ISISSTEGSGI TDS+VK  S             +S  DVQCR ++VRFECD DT SS+GSSS N +RS K++ETPGKQSISK S YPTPLTLS+EMQTPGTVFPA+   FPNGK+RIRSQYVY+V NP EGISQW ++K+EDSNS G  GE  ESL QSGNATPISE G KE SSG+EF +ESS+SSWLKPV   +DDNN   G   GR R+FGRTPGDRPIIGLVATHWNED+ TRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEG PIVFDE EESDTALSQLQSSSQPKSVVSF
Sbjct:    1 MGCFFGCFRVKDDRHLRSRPHLVSQSSRNNQTEVVISQNRLSSLFSAEEREGSPSKDRESPCYGSPQIDKELRNEAKFLKACGTLVETPVEIRKASSKLNGSPHHDRGSEPPKFNSWLPNTSIKQLQQEDQPDQPLTPIKLGEEWGKGSRRSDNTPSSM-SNQQNTGGISISSTEGSGIVTDSTVKTES-------------ISTPDVQCRSKAVRFECDIDTNSSRGSSSENYSRSAKVSETPGKQSISKPSVYPTPLTLSDEMQTPGTVFPANLGNFPNGKARIRSQYVYAVQNPVEGISQWKLMKDEDSNSQGLSGELRESLNQSGNATPISEVGAKETSSGQEFNVESSLSSWLKPVN--RDDNNQNFGYVPGRTRHFGRTPGDRPIIGLVATHWNEDESTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGKPIVFDETEESDTALSQLQSSSQPKSVVSF 473

[Close]

BLAST of jg11413.t1 vs. ExPASy TrEMBL
Match: A0A6J5UDK3_PRUAR (Protein JASON OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS22216 PE=4 SV=1)

HSP 1 Score: 738.028 bits (1904), Expect = 0.000e+0
Identity = 376/489 (76.89%), Postives = 412/489 (84.25%), Query Frame = 0

Query:   27 MGCFFGCFRVRDDRHLRSRPHLVSQSSR---SEVVISRNRLSSLFLDEEKGDSPSTDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSGIGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPNP-EGISQWNVLKEEDSNSHGFCGEPSESLKQSGNATPISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF 511
            MGCFFGCFRV+DDRHLRSRPHLVSQSSR   +EVVIS+NRLSSLF  EE+  SPS DRESP YG+P+IDKEL+NEAKFLKACGTLVETPVE+RKASSKLNGSPHHDR SEP KFNSWLPNTSIK LQQE+QP+QP TP+KL EEWGKG   S++TP S  SNQ++TG ISISSTEGSGI TDS+VK  S             +S  DVQCR ++V FECD DT SS+GSSS N +RS K++ETPGKQSISK S YPTPLTLS+EMQTPGTVFPA+   FPNGK+RIRSQYVY+V NP EGISQW ++K+EDSNS G  GE  ESL QSGNATPISE G KE SSG+EF +ESS+SSWLKPV   +DDNN   G   GR R+FGRTPGDRPIIGLVATHWNED+ TRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEG PIVFDE EESDTALSQLQSSSQPKSVVSF
Sbjct:    1 MGCFFGCFRVKDDRHLRSRPHLVSQSSRNNQTEVVISQNRLSSLFSAEEREGSPSKDRESPCYGSPQIDKELRNEAKFLKACGTLVETPVEIRKASSKLNGSPHHDRGSEPPKFNSWLPNTSIKQLQQEDQPDQPLTPIKLGEEWGKGSRRSDNTPSSM-SNQQNTGGISISSTEGSGIVTDSTVKTES-------------ISTPDVQCRSKAVHFECDIDTNSSRGSSSENYSRSAKVSETPGKQSISKPSVYPTPLTLSDEMQTPGTVFPANLGNFPNGKARIRSQYVYAVQNPVEGISQWKLMKDEDSNSQGLSGELRESLNQSGNATPISEVGAKETSSGQEFNVESSLSSWLKPVN--RDDNNQNFGYVPGRTRHFGRTPGDRPIIGLVATHWNEDESTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGKPIVFDETEESDTALSQLQSSSQPKSVVSF 473

[Close]

BLAST of jg11413.t1 vs. ExPASy TrEMBL
Match: A0A314YZE6_PRUYE (Protein JASON isoform X1 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_05161 PE=4 SV=1)

HSP 1 Score: 728.013 bits (1878), Expect = 0.000e+0
Identity = 379/517 (73.31%), Postives = 416/517 (80.46%), Query Frame = 0

Query:    1 MLC--FNRELGFVCRSVLGFLDRSISGAMGCFFGCFRVRDDRHLRSRPHLVSQSSR---SEVVISRNRLSSLFLDEEKGDSPSTDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSGIGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPNP-EGISQWNVLKEEDSNSHGFCGEPSESLKQSGNATPISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF 511
            MLC   +RELG +CRSVL FLDRS+SGAMGCFFGCFRV+DDRHLRSRPHLVSQSSR   +EVVIS+NRLSSLF  EE+  SPS DRESP YG+P+IDKEL+NEA                   SSKLNGSPHHDR SEP KFNSWLPNTSIK LQQE+QP+QP TP+KL EEWGKG   SEHTP S  SNQ++TG ISISSTEGSGI TDS+VK             + S+S  DVQ R ++VRFECD DT SS+GSS  N +RS K++ETPGKQSISK S YPTPLTLS+EMQTPGTVFPA+   FPNGK+RIRSQYVY+V NP EGISQW ++K+EDSNS G  GE  ESL QSGNA PISE G KE SSG+EF +ESS+SSWLKPV   +DDNN   G   GR R+FGRTPGDRPIIGLVATHWNED+PTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEG PIVFDE EESDTALSQLQSSSQPKSVVSF
Sbjct:    1 MLCSLLDRELGLLCRSVLRFLDRSVSGAMGCFFGCFRVKDDRHLRSRPHLVSQSSRNNQTEVVISQNRLSSLFSAEEREGSPSKDRESPCYGSPQIDKELRNEA-------------------SSKLNGSPHHDRGSEPPKFNSWLPNTSIKQLQQEDQPDQPLTPIKLGEEWGKGSRPSEHTPSSM-SNQQNTGGISISSTEGSGIVTDSTVK-------------TDSISTPDVQYRSKAVRFECDIDTNSSRGSSFENYSRSAKVSETPGKQSISKPSVYPTPLTLSDEMQTPGTVFPANLGNFPNGKARIRSQYVYAVQNPVEGISQWKLMKDEDSNSQGLSGELRESLNQSGNAAPISEVGAKETSSGQEFNVESSLSSWLKPVN--RDDNNQNFGYVPGRTRHFGRTPGDRPIIGLVATHWNEDEPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGKPIVFDETEESDTALSQLQSSSQPKSVVSF 482

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BLAST of jg11413.t1 vs. ExPASy TrEMBL
Match: A0A6P5TCR0_PRUAV (Protein JASON isoform X2 OS=Prunus avium OX=42229 GN=LOC110765911 PE=4 SV=1)

HSP 1 Score: 727.628 bits (1877), Expect = 0.000e+0
Identity = 379/517 (73.31%), Postives = 413/517 (79.88%), Query Frame = 0

Query:    1 MLC--FNRELGFVCRSVLGFLDRSISGAMGCFFGCFRVRDDRHLRSRPHLVSQSSR---SEVVISRNRLSSLFLDEEKGDSPSTDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSGIGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPNP-EGISQWNVLKEEDSNSHGFCGEPSESLKQSGNATPISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF 511
            MLC   +RELG +CRSVL FLDRS+SGAMGCFFGCFRV+DDRHLRSRPHLVSQSSR   +EVVIS+NRLSSLF  EE+  SPS DRESP YG+P+IDKEL+NEAKFLKACGTLVETPVE+RKASSKLNGSPHHDR SEP KFNSWLPNTSIK LQQE+QP+QP TP+KL EEWGKG   SEHTP S  SNQK+TG ISISSTEGSGI TDS+VK             + S+S  DVQCR ++VRFECD DT SS+GSSS N +RS K                           TPGTVFPA+   FPNGK+RIRSQYVY+V NP EGISQW ++K+EDSNS G  GE  ESL QSGNATPISE G KE SSG+EF +ESS+SSWLKPV   +DDNN   G   GR R+FGRTPGDRPIIGLVATHWNED+PTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEG PIVFDE EESDTALSQLQSSSQPKSVVSF
Sbjct:    1 MLCSLLDRELGLLCRSVLRFLDRSVSGAMGCFFGCFRVKDDRHLRSRPHLVSQSSRNNQTEVVISQNRLSSLFSAEEREGSPSKDRESPCYGSPQIDKELRNEAKFLKACGTLVETPVEIRKASSKLNGSPHHDRGSEPPKFNSWLPNTSIKQLQQEDQPDQPLTPIKLGEEWGKGSRPSEHTPSSM-SNQKNTGGISISSTEGSGIVTDSTVK-------------TGSISTPDVQCRSKAVRFECDIDTNSSRGSSSENYSRSAK---------------------------TPGTVFPANLGNFPNGKARIRSQYVYAVQNPVEGISQWKLMKDEDSNSQGLSGELRESLNQSGNATPISEVGAKETSSGQEFNVESSLSSWLKPVN--RDDNNQNFGYVPGRTRHFGRTPGDRPIIGLVATHWNEDEPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGKPIVFDETEESDTALSQLQSSSQPKSVVSF 474

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BLAST of jg11413.t1 vs. ExPASy TrEMBL
Match: A0A251Q215_PRUPE (Protein JASON OS=Prunus persica OX=3760 GN=PRUPE_3G178400 PE=4 SV=1)

HSP 1 Score: 721.85 bits (1862), Expect = 0.000e+0
Identity = 375/517 (72.53%), Postives = 411/517 (79.50%), Query Frame = 0

Query:    1 MLC--FNRELGFVCRSVLGFLDRSISGAMGCFFGCFRVRDDRHLRSRPHLVSQSSR---SEVVISRNRLSSLFLDEEKGDSPSTDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSGIGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPNP-EGISQWNVLKEEDSNSHGFCGEPSESLKQSGNATPISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF 511
            MLC   +REL  +CRSVL FLDRS+SGAMGCFFGCFRV+DDRHLRSRPHLVSQSSR   +EVVIS+NRLSSLF  EE+  SPS DRESP YG+P+IDKEL+NEAKFLKACGTLVETPVE+RKASSKLNGSPHHDR SEP KFNSWLPNTSIK LQQE+QP+QP TP+KL EEWGKG   SEHTP S  SNQ++TG ISISSTEGSGI TDS+VK  S             +S  DVQCR ++VRFECD +T SS+GSSS N +RS K                           TPGTVFPA+   FPNGK+RIRSQYVY+V NP EGISQW ++K+ED+NS G  GE  ESL QSGNATPISE G KE SSG+EF +ESS+SSWLKPV   +DDNN   G   GR R+FGRTPGDRPIIGLVATHWNED+PTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEG PIVFDE EESDTALSQLQSSSQPKSVVSF
Sbjct:    1 MLCSLLDRELRLLCRSVLRFLDRSVSGAMGCFFGCFRVKDDRHLRSRPHLVSQSSRNNQTEVVISQNRLSSLFSAEEREGSPSKDRESPCYGSPQIDKELRNEAKFLKACGTLVETPVEIRKASSKLNGSPHHDRGSEPPKFNSWLPNTSIKQLQQEDQPDQPLTPIKLGEEWGKGSRRSEHTPSSM-SNQQNTGGISISSTEGSGIVTDSTVKTES-------------ISTPDVQCRSKAVRFECDINTNSSRGSSSENYSRSAK---------------------------TPGTVFPANLGNFPNGKARIRSQYVYAVQNPVEGISQWKLMKDEDTNSQGLSGELRESLNQSGNATPISEVGAKETSSGQEFNVESSLSSWLKPVN--RDDNNQNFGYVPGRTRHFGRTPGDRPIIGLVATHWNEDEPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGKPIVFDETEESDTALSQLQSSSQPKSVVSF 474

[Close]

BLAST of jg11413.t1 vs. ExPASy TrEMBL
Match: A0A540L9D3_MALBA (Protein JASON OS=Malus baccata OX=106549 GN=C1H46_031328 PE=4 SV=1)

HSP 1 Score: 720.309 bits (1858), Expect = 0.000e+0
Identity = 380/518 (73.36%), Postives = 424/518 (81.85%), Query Frame = 0

Query:    1 MLC--FNRELGFVCRSVLGFLDRSISGAMGCFFGCFRVRDDRHLRSRPHLVSQSSR---SEVVISRNRLSSLFLDEEKGDSPSTDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQQE-NQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSGIGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPNP-EGISQWNVLKEEDSNSHGFCGEPSESLKQSGNATPISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF 511
            MLC    R +G +CR  L FLDRSIS AMGCFFGCFRV+DDRHLRSRPHLVSQSSR   +EVVIS+NRLSSLF  EEK  SPS D ES SYG+P+IDKEL+ EAKFLKACGT+ ETP E+RK SS LNGSPH DRDSEP KFNS LP TSIK LQQE +QP+QPPTP+K  EEWGKG G SEHTP S+ SNQ++ G  +ISS+ GSGIGTDS+VK H+N+ EN  TP        DVQ R ++VRF+C+ DT SS+GSSS N  +S K+ ETPGKQSISK S YPTPLTLS+EMQTPGTVFPA+   FPNGK+RIRSQYVYSV NP +GISQ NVLK+ED NSHG   E  ESL   GNATP SEEG K+ISSG+E  +ESS+S+WLKPVT    DNN + G   GR R+FGRTPGDRPIIGLVATHWNED+PTR+SPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRK+IEG PIVFDEN+ESDTALSQLQSSSQPKSVVSF
Sbjct:    1 MLCSLLKRGIGHLCRYALRFLDRSISRAMGCFFGCFRVKDDRHLRSRPHLVSQSSRNPQTEVVISQNRLSSLFSAEEKEGSPSKDWESASYGSPQIDKELRKEAKFLKACGTIAETPAEIRKVSSTLNGSPHRDRDSEPPKFNSQLPKTSIKNLQQELDQPDQPPTPMKFNEEWGKGSGPSEHTPSSFVSNQQNNGRTTISSSGGSGIGTDSTVKSHTNRTENITTP--------DVQFRSKAVRFDCNNDTNSSRGSSSENYNQSSKVCETPGKQSISKPSVYPTPLTLSDEMQTPGTVFPANLENFPNGKARIRSQYVYSVQNPGDGISQHNVLKDEDPNSHGLSVEQRESLNHWGNATPTSEEGAKQISSGQEVNVESSLSTWLKPVT---QDNNNQFGYVPGRTRHFGRTPGDRPIIGLVATHWNEDEPTRVSPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEESFISQRKNIEGKPIVFDENDESDTALSQLQSSSQPKSVVSF 507

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BLAST of jg11413.t1 vs. ExPASy Swiss-Prot
Match: JASON_ARATH (Protein JASON OS=Arabidopsis thaliana OX=3702 GN=JASON PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 1.312e-101
Identity = 230/523 (43.98%), Postives = 296/523 (56.60%), Query Frame = 0

Query:    2 LCFNRELGFVCRSVLGFLDRSISGAMGCFFGCFRVRDDRHLRSRPHLVSQSSRS---EVVISRNRLSSLFLDEEK-GDSPSTDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSGI-GTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPN-PEGISQWNVLKEEDSNSHGFCGEPSESLKQSGNATPISE---EGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGR-TPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEE---SFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF 511
            L  NR L  +CRSVL F+D S+  AM CF  CFR RD+R   S  +LVS SS +   +   S+N LS+LFL EEK   SP  D+E     +  IDK L++EA+FLKACGT+ ETP+E+RKAS KL  SP H   S    + S   +   ++ +         TP+K  EE G+   +SE T  S   + +    IS +S++G+ +    +++K    + + TA PT  +        + +SVRFECD D ++S  SS    +R     E  GK   +  S  PTPL LS+EMQTPGT++PA+  +   G+ RIRSQ+V+SV N  E  S + V K    +SH    E  +  +Q    TP SE   E ++E S  K  K E+S S WL  +       N  +   + R    G  TPGDRPIIGLVA  W E++ T ISPK WDGNGIPNST KYKEDQKVSWHATPFE RLEKALSEE   S   QRK +E    V  E  E DT +SQL  S QP SVVSF
Sbjct:    4 LLMNRNLSPLCRSVLRFIDLSVCRAMACFLDCFRARDNR---STSNLVSHSSLANSRKAQDSQNDLSALFLSEEKSASSPCLDKERFDLDSIHIDKGLRDEARFLKACGTIPETPIEIRKASQKL--SPQHSGSSHFHSWISSSSSMGSRLAESS-------TPMKACEEVGRPSFTSEQTASSCVIDVRDNARISSASSDGTEVESVGTAIK---GELDRTARPTFTA-------GKNKSVRFECDLDQSNSSNSSENGSSRK---PEMGGKICFTVSSPNPTPLKLSDEMQTPGTIYPANMESGGRGRPRIRSQFVHSVSNIMENASLYKVYK----DSH----EGLDYEEQIEAETPSSETYGEKVEESSDEKLSKFEASFSPWLNQI-------NENIAALNERTPGVGVITPGDRPIIGLVAAQWIENEQTEISPKMWDGNGIPNSTTKYKEDQKVSWHATPFEVRLEKALSEEGGQSLFPQRK-LE----VMMEEVEGDTDISQLHHSVQPNSVVSF 481

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BLAST of jg11413.t1 vs. Araport11
Match: | (Symbols: JASON | JASON | chr1:2037461-2040148 REVERSE LENGTH=481)

HSP 1 Score: 317.39 bits (812), Expect = 1.003e-102
Identity = 231/524 (44.08%), Postives = 297/524 (56.68%), Query Frame = 0

Query:    2 LCFNRELGFVCRSVLGFLDRSISGAMGCFFGCFRVRDDRHLRSRPHLVSQSSRS---EVVISRNRLSSLFLDEEK-GDSPSTDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSGI-GTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPN-PEGISQWNVLKEEDSNSHGFCGEPSESLKQSGNATPISE---EGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGR-TPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEE---SFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF* 512
            L  NR L  +CRSVL F+D S+  AM CF  CFR RD+R   S  +LVS SS +   +   S+N LS+LFL EEK   SP  D+E     +  IDK L++EA+FLKACGT+ ETP+E+RKAS KL  SP H   S    + S   +   ++ +         TP+K  EE G+   +SE T  S   + +    IS +S++G+ +    +++K    + + TA PT  +        + +SVRFECD D ++S  SS    +R     E  GK   +  S  PTPL LS+EMQTPGT++PA+  +   G+ RIRSQ+V+SV N  E  S + V K    +SH    E  +  +Q    TP SE   E ++E S  K  K E+S S WL  +       N  +   + R    G  TPGDRPIIGLVA  W E++ T ISPK WDGNGIPNST KYKEDQKVSWHATPFE RLEKALSEE   S   QRK +E    V  E  E DT +SQL  S QP SVVSF*
Sbjct:    4 LLMNRNLSPLCRSVLRFIDLSVCRAMACFLDCFRARDNR---STSNLVSHSSLANSRKAQDSQNDLSALFLSEEKSASSPCLDKERFDLDSIHIDKGLRDEARFLKACGTIPETPIEIRKASQKL--SPQHSGSSHFHSWISSSSSMGSRLAESS-------TPMKACEEVGRPSFTSEQTASSCVIDVRDNARISSASSDGTEVESVGTAIK---GELDRTARPTFTA-------GKNKSVRFECDLDQSNSSNSSENGSSRK---PEMGGKICFTVSSPNPTPLKLSDEMQTPGTIYPANMESGGRGRPRIRSQFVHSVSNIMENASLYKVYK----DSH----EGLDYEEQIEAETPSSETYGEKVEESSDEKLSKFEASFSPWLNQI-------NENIAALNERTPGVGVITPGDRPIIGLVAAQWIENEQTEISPKMWDGNGIPNSTTKYKEDQKVSWHATPFEVRLEKALSEEGGQSLFPQRK-LE----VMMEEVEGDTDISQLHHSVQPNSVVSF* 482

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BLAST of jg11413.t1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr2:13129800-13132391 FORWARD LENGTH=421)

HSP 1 Score: 242.662 bits (618), Expect = 1.048e-74
Identity = 194/498 (38.96%), Postives = 265/498 (53.21%), Query Frame = 0

Query:   27 MGCFFGCFRVRDDRHLRSRPHLVSQSSRSEVVISRNRLSSLFLDEEKGDSPS-TDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLN--GSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSG--IGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPNPEGISQWNVLK-EEDSNSHGFCGEPSESLKQSGNATP---ISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEE---SFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF* 512
            MGC FGCFR +DD    S    VSQ+  +    S+NRLS+LFL E    SP   DRE  S  +  IDK+LK++A+FLK    +  TP+E+R  S KL       H R S         P+ + +++   N+ +  P      EE G+   +SE TP S  ++ ++   IS +S++ S   IGT     +  ++ + T            V+ + +SVR E DF  + S  SS     R+    E  GK SIS  S Y T + LS+E+QTPGT+FPA+  +    + RIRSQ+V+S  N   I   ++ K  EDSN++    +     +++ N +P   I  E L+E S GK+                       ++G+ S  +      PGDRPIIG+VA HWNE + ++ISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEE    FI  R+      +   E  E DTA+S L+      SV+SF*
Sbjct:    1 MGCLFGCFRAKDDE---STTDSVSQAKHNRGHESKNRLSALFLSE--ASSPCHDDREGSSLNSMHIDKDLKDDAQFLKVSCEIPATPIEVRNTSKKLETPKGGEHLRSS---------PSCNSEVVFHLNEKKNEP-----CEEMGRSLDTSEQTPSSCLTDARNNARISSASSDDSEESIGT-----VFRDEVDRTG-----------VREKTKSVRSEIDFGQSYSSSSSKN---RTASKPEMVGKTSISATSPYTTSMKLSDEIQTPGTIFPANMESAGRERRRIRSQFVHSASNL--IVNASLCKLHEDSNANLEQAKVQAYKEKTENESPTSTICGEKLEESSDGKK-----------------------QIGEIS--SSPLSINPGDRPIIGMVAAHWNEKEHSQISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEEGGQGFIPPRR------LGTVEESERDTAISHLR-----HSVISF* 422

[Close]

Query:   27 MGCFFGCFRVRDDRHLRSRPHLVSQSSRSEVVISRNRLSSLFLDEEKGDSPS-TDRESPSYGTPKIDKELKNEAKFLKACGTLVETPVELRKASSKLN--GSPHHDRDSEPSKFNSWLPNTSIKMLQQENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGSG--IGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSKGSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQRTFPNGKSRIRSQYVYSVPNPEGISQWNVLK-EEDSNSHGFCGEPSESLKQSGNATP---ISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGRNRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEE---SFISQRKHIEGMPIVFDENEESDTALSQLQSSSQPKSVVSF* 512
            MGC FGCFR +DD    S    VSQ+  +    S+NRLS+LFL E    SP   DRE  S  +  IDK+LK++A+FLK    +  TP+E+R  S KL       H R S         P+ + +++   N+ +  P      EE G+   +SE TP S  ++ ++   IS +S++ S   IGT     +  ++ + T            V+ + +SVR E DF  + S  SS     R+    E  GK SIS  S Y T + LS+E+QTPGT+FPA+  +    + RIRSQ+V+S  N   I   ++ K  EDSN++    +     +++ N +P   I  E L+E S GK+                       ++G+ S  +      PGDRPIIG+VA HWNE + ++ISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEE    FI  R+      +   E  E DTA+S L+      SV+SF*
Sbjct:    1 MGCLFGCFRAKDDE---STTDSVSQAKHNRGHESKNRLSALFLSE--ASSPCHDDREGSSLNSMHIDKDLKDDAQFLKVSCEIPATPIEVRNTSKKLETPKGGEHLRSS---------PSCNSEVVFHLNEKKNEP-----CEEMGRSLDTSEQTPSSCLTDARNNARISSASSDDSEESIGT-----VFRDEVDRTG-----------VREKTKSVRSEIDFGQSYSSSSSKN---RTASKPEMVGKTSISATSPYTTSMKLSDEIQTPGTIFPANMESAGRERRRIRSQFVHSASNL--IVNASLCKLHEDSNANLEQAKVQAYKEKTENESPTSTICGEKLEESSDGKK-----------------------QIGEIS--SSPLSINPGDRPIIGMVAAHWNEKEHSQISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALSEEGGQGFIPPRR------LGTVEESERDTAISHLR-----HSVISF* 422

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BLAST of jg11413.t1 vs. Araport11
Match: | (Symbols: no symbol available | no full name available | chr1:1040597-1042313 FORWARD LENGTH=434)

HSP 1 Score: 61.6178 bits (148), Expect = 6.690e-10
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 0

Query:  406 RTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALS 468
            ++P + PIIG V  +W                GIPN+++KY+ED+ V+WH+TPFE RLEKAL+
Sbjct:  368 KSPDETPIIGTVGGYWGNRSKAIDCGSASSFKGIPNTSSKYREDKSVNWHSTPFEARLEKALN 430

[Close]

Query:  406 RTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQKVSWHATPFEERLEKALS 468
            ++P + PIIG V  +W                GIPN+++KY+ED+ V+WH+TPFE RLEKAL+
Sbjct:  368 KSPDETPIIGTVGGYWGNRSKAIDCGSASSFKGIPNTSSKYREDKSVNWHSTPFEARLEKALN 430

The following BLAST results are available for this feature:

BLAST of jg11413.t1 vs. ExPASy TrEMBL
BLAST of jg11413.t1 vs. ExPASy Swiss-Prot
BLAST of jg11413.t1 vs. Araport11

BLAST of jg11413.t1 vs. ExPASy TrEMBL
Analysis Date: 2023-07-11 (Blastp of Rubus idaeus cv. 'Autumn Bliss' NIAB v1.0 proteins vs UniProt TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
A0A2P6S0D3_ROSCH	0.000e+0	87.48	Protein JASON OS=Rosa chinensis OX=74649 GN=RchiOB...	[more]
A0A6P5TCG7_PRUAV	0.000e+0	77.56	Protein JASON isoform X1 OS=Prunus avium OX=42229 ...	[more]
A0A251Q1U6_PRUPE	0.000e+0	76.79	Protein JASON OS=Prunus persica OX=3760 GN=PRUPE_3...	[more]
A0A5E4FNY3_PRUDU	0.000e+0	76.60	PREDICTED: JASON OS=Prunus dulcis OX=3755 GN=ALMON...	[more]
A0A6J5WXM4_PRUAR	0.000e+0	77.10	Protein JASON OS=Prunus armeniaca OX=36596 GN=ORAR...	[more]
A0A6J5UDK3_PRUAR	0.000e+0	76.89	Protein JASON OS=Prunus armeniaca OX=36596 GN=CURH...	[more]
A0A314YZE6_PRUYE	0.000e+0	73.31	Protein JASON isoform X1 OS=Prunus yedoensis var. ...	[more]
A0A6P5TCR0_PRUAV	0.000e+0	73.31	Protein JASON isoform X2 OS=Prunus avium OX=42229 ...	[more]
A0A251Q215_PRUPE	0.000e+0	72.53	Protein JASON OS=Prunus persica OX=3760 GN=PRUPE_3...	[more]
A0A540L9D3_MALBA	0.000e+0	73.36	Protein JASON OS=Malus baccata OX=106549 GN=C1H46_...	[more]

BLAST of jg11413.t1 vs. ExPASy Swiss-Prot
Analysis Date: 2023-07-11 (Blastp of Rubus idaeus cv. 'Autumn Bliss' NIAB v1.0 proteins vs UniProt Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
JASON_ARATH	1.312e-101	43.98	Protein JASON OS=Arabidopsis thaliana OX=3702 GN=J...	[more]

BLAST of jg11413.t1 vs. Araport11
Analysis Date: 2023-07-11 (Blastp of Rubus idaeus cv. 'Autumn Bliss' NIAB v1.0 proteins vs Araport11)
Total hits: 5


Match Name	E-value	Identity	Description
\|	1.003e-102	44.08	Symbols: JASON \| JASON \| chr1:2037461-2040148 REVE...	[more]
\|	1.048e-74	38.96	Symbols: no symbol available \| no full name availa...	[more]
\|	1.048e-74	38.96	Symbols: no symbol available \| no full name availa...	[more]
\|	6.690e-10	44.44	Symbols: no symbol available \| no full name availa...	[more]
\|	6.690e-10	44.44	Symbols: no symbol available \| no full name availa...	[more]

InterPro

Analysis Name: InterProScan Analysis for Rubus idaeus cv. 'Autumn Bliss' NIAB v1.0 proteins
Date Performed: 2023-07-11


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 491..511
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 483..511
IPR039300	Protein JASON	PANTHER	PTHR33318	ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) AMIDOTRANSFERASE SUBUNIT	coord: 27..477

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at HiC_scaffold_6_RagTag:42603170..42606788-
coding sequence from alignment at HiC_scaffold_6_RagTag:42603170..42606788-

mRNA sequence

>jg11413.t1_AB-NIAB_v1 ID=jg11413.t1_AB-NIAB_v1; Name=jg11413.t1; organism=Rubus idaeus; type=mRNA; length=1536bp
ATGTTATGCTTCAATCGTGAATTAGGGTTTGTGTGCAGATCGGTGTTGGG
GTTTCTTGACAGATCGATCTCCGGAGCTATGGGCTGCTTCTTCGGTTGCT
TCAGGGTCAGGGACGATCGCCACCTTCGCTCTCGGCCTCACCTCGTTTCT
CAGTCGTCTCGCTCGGAAGTCGTGATATCTCGAAACCGTTTGTCATCTCT
ATTTTTAGACGAAGAGAAAGGAGATTCTCCATCCACAGATAGGGAAAGTC
CTAGTTATGGGACTCCAAAAATTGACAAGGAGCTCAAGAACGAGGCCAAG
TTTCTTAAGGCTTGTGGTACCCTAGTGGAGACCCCAGTTGAACTTCGGAA
AGCTTCTTCAAAATTAAATGGCTCACCCCATCATGATAGAGATTCAGAGC
CGTCAAAATTCAACTCTTGGCTTCCCAACACATCCATTAAAATGCTTCAG
CAGGAGAATCAACCAGAGCAACCTCCTACACCTGTTAAGCTTCTTGAAGA
GTGGGGAAAGGGGCCAGGTTCTTCAGAGCATACACCTATCAGTTATGAGT
CAAACCAAAAGAGTACTGGATGGATCTCCATCAGCTCAACTGAAGGTAGT
GGAATAGGTACTGATTCATCAGTAAAGATTCATTCTAATCAGGCTGAGAA
CACTGCAACTCCAACTTCACCTTCACTCTCAGCCACAGATGTCCAGTGCA
GGGGAAGGTCTGTTCGTTTTGAATGCGATTTTGATACAGCATCCTCAAAA
GGTTCTTCATCCGGTAACTGTACGAGGAGTGTAAAAATAGCTGAAACTCC
AGGAAAACAGAGCATATCAAAGTATTCAGCTTATCCAACCCCACTGACTC
TTTCTGAAGAGATGCAGACACCTGGAACAGTTTTCCCTGCAAGCCAGAGA
ACTTTTCCTAATGGAAAGTCTCGAATCAGGTCCCAGTATGTGTATTCAGT
TCCAAACCCTGAGGGCATCTCTCAGTGGAATGTACTGAAAGAGGAAGATA
GTAACTCACATGGGTTTTGTGGTGAGCCTAGTGAGTCTCTTAAACAATCT
GGAAATGCAACCCCTATATCAGAAGAGGGGCTAAAAGAAATTTCATCTGG
AAAAGAGTTCAAGATGGAATCAAGTATGTCCTCCTGGCTGAAGCCAGTGA
CATCTACTCAAGATGACAATAATCTAAAGTTAGGAGATGCTTCTGGTAGA
AATCGTTATTTTGGCAGAACTCCTGGGGACAGGCCTATAATTGGGTTGGT
TGCTACTCACTGGAATGAAGATGACCCTACTCGTATCTCCCCTAAGTGGT
GGGACGGGAATGGAATCCCAAATTCAACCAATAAATACAAGGAGGATCAG
AAAGTGAGTTGGCATGCAACACCATTTGAGGAGAGGTTGGAGAAGGCATT
GTCTGAGGAAAGTTTCATCTCTCAGAGAAAACATATAGAGGGAATGCCCA
TTGTGTtcgatgagaatgaggaaagtgatactgctctttcgcagttgcaa
tcttcgtcccagccaaagtcagtgGTTTCATTTTGA

protein sequence of jg11413.t1_AB-NIAB_v1

>jg11413.t1_AB-NIAB_v1 ID=jg11413.t1_AB-NIAB_v1; Name=jg11413.t1_AB-NIAB_v1; organism=Rubus idaeus; type=polypeptide; length=512bp
MLCFNRELGFVCRSVLGFLDRSISGAMGCFFGCFRVRDDRHLRSRPHLVS
QSSRSEVVISRNRLSSLFLDEEKGDSPSTDRESPSYGTPKIDKELKNEAK
FLKACGTLVETPVELRKASSKLNGSPHHDRDSEPSKFNSWLPNTSIKMLQ
QENQPEQPPTPVKLLEEWGKGPGSSEHTPISYESNQKSTGWISISSTEGS
GIGTDSSVKIHSNQAENTATPTSPSLSATDVQCRGRSVRFECDFDTASSK
GSSSGNCTRSVKIAETPGKQSISKYSAYPTPLTLSEEMQTPGTVFPASQR
TFPNGKSRIRSQYVYSVPNPEGISQWNVLKEEDSNSHGFCGEPSESLKQS
GNATPISEEGLKEISSGKEFKMESSMSSWLKPVTSTQDDNNLKLGDASGR
NRYFGRTPGDRPIIGLVATHWNEDDPTRISPKWWDGNGIPNSTNKYKEDQ
KVSWHATPFEERLEKALSEESFISQRKHIEGMPIVFDENEESDTALSQLQ
SSSQPKSVVSF*

mRNA from alignment at HiC_scaffold_6_RagTag:42603170..42606788-

Legend: polypeptideCDSexonstart_codonintronstop_codonmRNA

Hold the cursor over a type above to highlight its positions in the sequence below.

>jg11413.t1_AB-NIAB_v1 ID=jg11413.t1_AB-NIAB_v1; Name=jg11413.t1; organism=Rubus idaeus; type=mRNA; length=3619bp; location=Sequence derived from: HiC_scaffold_6_RagTag:42603170..42606788- (Rubus idaeus
ATGTTATGCTTCAATCGTGAATTAGGGTTTGTGTGCAGATCGGTGTTGGG
GTTTCTTGACAGATCGATCTCCGGAGCTATGGGCTGCTTCTTCGGTTGCT
TCAGGGTCAGGGACGATCGCCACCTTCGCTCTCGGCCTCACCTCGTTTCT
CAGTCGTCTCGCTCGGTATGGTTCCCGTTTGGTGTTCCAAGAATTGCCTT
TTCCCCCTTTTTACATTTCTTGAATCAGCACAATTTCGCTTCTTGTTCTT
AATCCTCTGTCTGATTTTGAGAAAATTCGAGAGAAAGGGAATCGATTTTG
AGTGATAGTGTTGTGCTTCGTCTTGAATTCCAAAGAAACGAGATTTAGGT
CTTTCTGTGTAGTTAATTTTCGTTTTGGTAGCTGAAAAAAATTATGTAAA
ATGGAGCCAGAAGCATTTCTTTAGCTGCTAATCAGTTGATTATGAGATAC
AACACTGATTTCTCGTTTTCTGTTTCCTCTATTTTAATCAGGAAGTCGTG
ATATCTCGAAACCGTTTGTCATCTCTATTTTTAGACGAAGGTATTTTTTT
TTTCCCTCCATATAAACTTTTTACTTCAATCTGAATTTATAAATGTCATT
GCTGATTTTGTTTCTTCTCTGGTTTGTATGTAACTCCTAAAGAGAAAGGA
GATTCTCCATCCACAGATAGGGAAAGTCCTAGTTATGGGACTCCAAAAAT
TGACAAGGAGCTCAAGAACGAGGTATGAGACACTAAAAAACTCTCATACA
CTCGCAATGATATATACATTTTCATATGGGTTTGGAAGTATTATATAATG
TTTGGCAAAAAGAGAAGTATTTGTGTGGTGATCCCTACTTTCTTCTGTGG
TTTTTGCCTTGTAAGCTAGAAAACTAAAAGTTTAATGCAGTTGTGTCCTC
TTTACAGTGCACTTGATAGTCAATTTAGCAGTTAAGAATTGATTATTTGG
TTGGCTCAATCCTAAAAAAGTTACATAGTTCGAATTTAGTTCGGATATAA
GGGCTGCTGGGCTAATCAATTTTCTGTTCTTTGATTTAAAAGAAATCACT
TTCTCAGTCTTGAAAAATGAAATTGTTCTCGACTAGCATGGTGTTTAAAT
CAAGCAACTGTCATCAGTTTACAAAATGTTGCTTTTATAAGTTAGAATTT
GTGGCAGTCAGTGGAGTGGAGCTTCAACTCCAATTTTGTGTATTGGATTA
TTCGCATCATTCCTAGTTACTAATGTTTGGTTAAGTTTTAAGATAAGTGT
TAAATTTTTGAATTTCTCTCATTGCTGAAAAATACTTGTTTTACTAAAGC
ACATGATTTTGCAGGCCAAGTTTCTTAAGGCTTGTGGTACCCTAGTGGAG
ACCCCAGTTGAACTTCGGAAAGCTTCTTCAAAATTAAATGGCTCACCCCA
TCATGATAGAGATTCAGAGCCGTCAAAATTCAACTCTTGGCTTCCCAACA
CATCCATTAAAATGCTTCAGCAGGAGAATCAACCAGAGCAACCTCCTACA
CCTGTTAAGCTTCTTGAAGAGTGGGGAAAGGGGCCAGGTTCTTCAGAGCA
TACACCTATCAGGTTATCCTTATAACTGTTTAGAATGATTGAAAATTTAT
TAAATTTTCTATTTATAGATGGCATGGAAGGTCGTTTTCTAAACATAATT
TCCACTCTGAATGTTGTCGGCTATGAAATGTTTGTGGTTATCTCATCTTT
CTGTTTCCACAGAGAAAATTGGTTCCATTGTGAAACTGTCTGCAGCAAAT
AATTGAGTCATTATCGTATTGGTCTAATGGTGTGAACTTTAGGGGGAACC
ATTTAGTATTAGTATAAATGCATGATTTCAGTACTTGCATTCTTATATCT
TAGATTTTAATTTTTATAAAATAACGTTCTTACATTTTTCAAATTCATTT
CTTTTCTGTAGTTATGAGTCAAACCAAAAGAGTACTGGATGGATCTCCAT
CAGCTCAACTGAAGGTAGTGGAATAGGTACTGATTCATCAGTAAAGATTC
ATTCTAATCAGGCTGAGAACACTGCAACTCCAACTTCACCTTCACTCTCA
GCCACAGATGTCCAGTGCAGGGGAAGGTCTGTTCGTTTTGAATGCGATTT
TGATACAGCATCCTCAAAAGGTTCTTCATCCGGTAACTGTACGAGGAGTG
TAAAAATAGCTGAAACTCCAGGAAAACAGAGCATATCAAAGTATTCAGCT
TATCCAACCCCACTGACTCTTTCTGAAGAGATGCAGACACCTGGAACAGT
TTTCCCTGCAAGCCAGAGAACTTTTCCTAATGGAAAGTCTCGAATCAGGT
CCCAGTATGTGTATTCAGTTCCAAACCCTGAGGGCATCTCTCAGTGGAAT
GTACTGAAAGAGGAAGATAGTAACTCACATGGGTTTTGTGGTGAGCCTAG
TGAGTCTCTTAAACAATCTGGAAATGCAACCCCTATATCAGAAGAGGGGC
TAAAAGAAATTTCATCTGGAAAAGAGTTCAAGATGGAATCAAGTATGTCC
TCCTGGCTGAAGCCAGTGACATCTACTCAAGATGACAATAATCTAAAGTT
AGGAGATGCTTCTGGTAGAAATCGTTATTTTGGCAGAACTCCTGGGGACA
GGCCTATAATTGGGTTGGTTGCTACTCACTGGAATGAAGATGACCCTACT
CGTATCTCCCCTAAGTGGTGGGACGGGAATGGAATCCCAAATTCAACCAA
TAAATACAAGGAGGTTTGGCTTATTGCTTTGTATGTATTTCTGCAGCCTT
CATTCGCTAAAGTCATATCTGAAGTCCTTTTTATTTTCAGGATCAGAAAG
TGAGTTGGCATGCAACACCATTTGAGGAGAGGTTGGAGAAGGCATTGTCT
GAGGAAAGTTTCATCTCTCAGAGGTATTACTGCTTCCTTGTCTAATGTCT
TCTGTGCAGTGTGATATCTGCAAATATTAGATTTTAACCTGCAAACAATG
TGAATTTTTTCTTGTGAACCCCAGTATTTCTTTACCTGCTAGGCTGTTGG
GGCTGCACTAAACCTATTCCTCTTAGTTAATTTTGTTTGTCATGTGGCTG
AGTCGAGTATGACTCACATTTTAAGTCTTTCCTTCTCTTTTTCTTTTATG
GCTTTTAGGTTTGATAAGATATCCATCTTGTTTACATTCCCATACATATT
ATGTTTTGGTGAAAATTGTATAGTTTACTTCACGCTTAAAAAGGTGCAAC
AGTAGGTGCAACCAAGTCAAATGTGAACATGAAATATGGGAATGGCCCAA
AATGGGATATTGTGGTCATTCCCATATTCCTGTCAGTTTTGTTAGCATTG
CAGGCGTTTCATCTTCTTTTAGGGATATGCATACCTCTTTTGTTCTTTGA
CAGAATAAATTTTTATTTACTTGTGTTTTGTTCATCTGAGAGCTGAATAA
TCTCCATTAGATTTTCTTCTTTTCAGTTTTCACATGTTTTTCATCACTGC
TAAAGAAGCATTGACTTACCTTGATAGCAAATCTAACTATGTACACTCTT
TGGTTTGCAGAAAACATATAGAGGGAATGCCCATTGTGTTCGATGAGAAT
GAGGAAAGTGATACTGCTCTTTCGCAGTTGCAATCTTCGTCCCAGCCAAA
GTCAGTGGTTTCATTTTGA

Coding sequence (CDS) from alignment at HiC_scaffold_6_RagTag:42603170..42606788-

>jg11413.t1_AB-NIAB_v1 ID=jg11413.t1_AB-NIAB_v1; Name=jg11413.t1; organism=Rubus idaeus; type=CDS; length=1536bp; location=Sequence derived from: HiC_scaffold_6_RagTag:42603170..42606788- (Rubus idaeus
ATGTTATGCTTCAATCGTGAATTAGGGTTTGTGTGCAGATCGGTGTTGGG
GTTTCTTGACAGATCGATCTCCGGAGCTATGGGCTGCTTCTTCGGTTGCT
TCAGGGTCAGGGACGATCGCCACCTTCGCTCTCGGCCTCACCTCGTTTCT
CAGTCGTCTCGCTCGGAAGTCGTGATATCTCGAAACCGTTTGTCATCTCT
ATTTTTAGACGAAGAGAAAGGAGATTCTCCATCCACAGATAGGGAAAGTC
CTAGTTATGGGACTCCAAAAATTGACAAGGAGCTCAAGAACGAGGCCAAG
TTTCTTAAGGCTTGTGGTACCCTAGTGGAGACCCCAGTTGAACTTCGGAA
AGCTTCTTCAAAATTAAATGGCTCACCCCATCATGATAGAGATTCAGAGC
CGTCAAAATTCAACTCTTGGCTTCCCAACACATCCATTAAAATGCTTCAG
CAGGAGAATCAACCAGAGCAACCTCCTACACCTGTTAAGCTTCTTGAAGA
GTGGGGAAAGGGGCCAGGTTCTTCAGAGCATACACCTATCAGTTATGAGT
CAAACCAAAAGAGTACTGGATGGATCTCCATCAGCTCAACTGAAGGTAGT
GGAATAGGTACTGATTCATCAGTAAAGATTCATTCTAATCAGGCTGAGAA
CACTGCAACTCCAACTTCACCTTCACTCTCAGCCACAGATGTCCAGTGCA
GGGGAAGGTCTGTTCGTTTTGAATGCGATTTTGATACAGCATCCTCAAAA
GGTTCTTCATCCGGTAACTGTACGAGGAGTGTAAAAATAGCTGAAACTCC
AGGAAAACAGAGCATATCAAAGTATTCAGCTTATCCAACCCCACTGACTC
TTTCTGAAGAGATGCAGACACCTGGAACAGTTTTCCCTGCAAGCCAGAGA
ACTTTTCCTAATGGAAAGTCTCGAATCAGGTCCCAGTATGTGTATTCAGT
TCCAAACCCTGAGGGCATCTCTCAGTGGAATGTACTGAAAGAGGAAGATA
GTAACTCACATGGGTTTTGTGGTGAGCCTAGTGAGTCTCTTAAACAATCT
GGAAATGCAACCCCTATATCAGAAGAGGGGCTAAAAGAAATTTCATCTGG
AAAAGAGTTCAAGATGGAATCAAGTATGTCCTCCTGGCTGAAGCCAGTGA
CATCTACTCAAGATGACAATAATCTAAAGTTAGGAGATGCTTCTGGTAGA
AATCGTTATTTTGGCAGAACTCCTGGGGACAGGCCTATAATTGGGTTGGT
TGCTACTCACTGGAATGAAGATGACCCTACTCGTATCTCCCCTAAGTGGT
GGGACGGGAATGGAATCCCAAATTCAACCAATAAATACAAGGAGGATCAG
AAAGTGAGTTGGCATGCAACACCATTTGAGGAGAGGTTGGAGAAGGCATT
GTCTGAGGAAAGTTTCATCTCTCAGAGAAAACATATAGAGGGAATGCCCA
TTGTGTTCGATGAGAATGAGGAAAGTGATACTGCTCTTTCGCAGTTGCAA
TCTTCGTCCCAGCCAAAGTCAGTGGTTTCATTTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR039300	JASON

Vocabulary: **Biological Process**
Term	Definition
GO:0007142	male meiosis II