MDP0000122446, MDP0000122446 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000122446
Unique NameMDP0000122446
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length740
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000122446_exon_1MDP0000122446_exon_1Malus x domesticaCDS
MDP0000122446_exon_2MDP0000122446_exon_2Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000122446MDP0000122446Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23241FAMILY NOT NAMEDcoord: 6..138
score: 1.1
NoneNo IPR availablePANTHERPTHR23241:SF34 LATE EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE / LEA PROTEIN, PUTATIVEcoord: 6..138
score: 1.1
NoneNo IPR availableCOILcoilcoiled-coilcoord: 12..29
score: NAcoord: 30..33
score
NoneNo IPR availableSEGsegsegcoord: 1..16
score: NAcoord: 33..50
score
NoneNo IPR availableSEGsegsegcoord: 17..34
score
NoneNo IPR availableSEGsegsegcoord: 38..50
score: NAcoord: 55..120
score
NoneNo IPR availableSEGsegsegcoord: 33..42
score
NoneNo IPR availableSEGsegsegcoord: 3..8
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000122446 ID=MDP0000122446; Name=MDP0000122446; organism=Malus x domestica; type=mRNA; length=740bp
ATGGCGTCTCACAGACAGACCTRCCGAGCTGGTGAAGCCAAGGGCCAAGC
TCAGGTATACATTGACATGATAGTATAGCTACATTTGATAACATATATTG
ATATTGGTTACTCTCGGTCTAGCTTTTAGCACATCGAATTTGAGTATTTG
AAGTTCTGTAGGCAGTGGCAGAAACTAAATTAGGAAGAGTAGGAATGTTA
AACTGTCACACTTTAGGTTATCTTGTTTATGTTGTAAAATTGTTGGATAT
GTCATTTCAATCTAATTTATATCGTTGTCGTCTAAACAGATTGACATSTT
ATCATTACATTTTGAATAATGTTGATGCACTTCCGTTCGTTTTTTACATC
CAGGAAAAGACAAATCAGATGATGGACACAATTGGGCAGGAGGCCCAAGA
AGTAAAGGACAAGACCCACGAGACAGCCCAGGCAGCCAAGGAGAGAGCAA
AGGGTGCAACTCAAACAACTAGAGACAAGGGCCAAGAGAARGGACAAGTT
ACAAAGGCAAAGGCACGGCAGAGCAAGGAGGCGACCGAGGAGAAGGCCTC
GGAGGTAGGCCAGAAGGCCAAAGGCACCGCGGACGCTGGCAAGGAGAAGT
CGGAGGGGTTCCTCCAGCAGACCGGAGAGAAAGTGAAGAACATGGCACAG
ACTACTACTGATGCTGTCAAGAATACGTTGGGCATGGCAAAGGACGACGA
GGAAGAAGATGTTGTTTACTCTAGGAAGGAGAGGGACTAG
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protein sequence of MDP0000122446

>MDP0000122446 ID=MDP0000122446; Name=MDP0000122446; organism=Malus x domestica; type=polypeptide; length=146bp
MASHRQTXRAGEAKGQAQEKTNQMMDTIGQEAQEVKDKTHETAQAAKERA
KGATQTTRDKGQEKGQVTKAKARQSKEATEEKASEVGQKAKGTADAGKEK
SEGFLQQTGEKVKNMAQTTTDAVKNTLGMAKDDEEEDVVYSRKERD
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mRNA from alignment at chr13:9084515..9085254-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000122446 ID=MDP0000122446; Name=MDP0000122446; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:9084515..9085254- (Malus x domestica
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mRNA from alignment at MDC005839.240:563..1302-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000122446 ID=MDP0000122446; Name=MDP0000122446; organism=Malus x domestica; type=mRNA; length=740bp; location=Sequence derived from: MDC005839.240:563..1302- (Malus x domestica
ATGGCGTCTCACAGACAGACCTRCCGAGCTGGTGAAGCCAAGGGCCAAGC
TCAGGTATACATTGACATGATAGTATAGCTACATTTGATAACATATATTG
ATATTGGTTACTCTCGGTCTAGCTTTTAGCACATCGAATTTGAGTATTTG
AAGTTCTGTAGGCAGTGGCAGAAACTAAATTAGGAAGAGTAGGAATGTTA
AACTGTCACACTTTAGGTTATCTTGTTTATGTTGTAAAATTGTTGGATAT
GTCATTTCAATCTAATTTATATCGTTGTCGTCTAAACAGATTGACATSTT
ATCATTACATTTTGAATAATGTTGATGCACTTCCGTTCGTTTTTTACATC
CAGGAAAAGACAAATCAGATGATGGACACAATTGGGCAGGAGGCCCAAGA
AGTAAAGGACAAGACCCACGAGACAGCCCAGGCAGCCAAGGAGAGAGCAA
AGGGTGCAACTCAAACAACTAGAGACAAGGGCCAAGAGAARGGACAAGTT
ACAAAGGCAAAGGCACGGCAGAGCAAGGAGGCGACCGAGGAGAAGGCCTC
GGAGGTAGGCCAGAAGGCCAAAGGCACCGCGGACGCTGGCAAGGAGAAGT
CGGAGGGGTTCCTCCAGCAGACCGGAGAGAAAGTGAAGAACATGGCACAG
ACTACTACTGATGCTGTCAAGAATACGTTGGGCATGGCAAAGGACGACGA
GGAAGAAGATGTTGTTTACTCTAGGAAGGAGAGGGACTAG
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Coding sequence (CDS) from alignment at MDC005839.240:563..1302-

>MDP0000122446 ID=MDP0000122446; Name=MDP0000122446; organism=Malus x domestica; type=CDS; length=441bp; location=Sequence derived from: MDC005839.240:563..1302- (Malus x domestica
ATGGCGTCTCACAGACAGACCTRCCGAGCTGGTGAAGCCAAGGGCCAAGC
TCAGGAAAAGACAAATCAGATGATGGACACAATTGGGCAGGAGGCCCAAG
AAGTAAAGGACAAGACCCACGAGACAGCCCAGGCAGCCAAGGAGAGAGCA
AAGGGTGCAACTCAAACAACTAGAGACAAGGGCCAAGAGAARGGACAAGT
TACAAAGGCAAAGGCACGGCAGAGCAAGGAGGCGACCGAGGAGAAGGCCT
CGGAGGTAGGCCAGAAGGCCAAAGGCACCGCGGACGCTGGCAAGGAGAAG
TCGGAGGGGTTCCTCCAGCAGACCGGAGAGAAAGTGAAGAACATGGCACA
GACTACTACTGATGCTGTCAAGAATACGTTGGGCATGGCAAAGGACGACG
AGGAAGAAGATGTTGTTTACTCTAGGAAGGAGAGGGACTAG
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