MDP0000134492, MDP0000134492 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000134492
Unique Name	MDP0000134492
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1852

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr2	chromosome	chr2:2160756..2162607 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC001013.217	contig	MDC001013.217:218..2069 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000134492_exon_1	MDP0000134492_exon_1	Malus x domestica	CDS
MDP0000134492_exon_2	MDP0000134492_exon_2	Malus x domestica	CDS
MDP0000134492_exon_3	MDP0000134492_exon_3	Malus x domestica	CDS
MDP0000134492_exon_4	MDP0000134492_exon_4	Malus x domestica	CDS
MDP0000134492_exon_5	MDP0000134492_exon_5	Malus x domestica	CDS
MDP0000134492_exon_6	MDP0000134492_exon_6	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000134492	MDP0000134492	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013216	Methyltransferase type 11	PFAM	PF08241	Methyltransf_11	coord: 182..285 score: 1.7
None	No IPR available	GENE3D	3.40.50.150	no description	coord: 143..283 score: 2.9
None	No IPR available	PANTHER	PTHR10108	FAMILY NOT NAMED	coord: 71..283 score: 2.7e
None	No IPR available	PANTHER	PTHR10108:SF157	METHYLTRANSFERASE-RELATED	coord: 71..283 score: 2.7e
None	No IPR available	SEG	seg	seg	coord: 28..42 score
None	No IPR available	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 162..280 score: 9.2
None	No IPR available	SEG	seg	seg	coord: 29..44 score
None	No IPR available	SEG	seg	seg	coord: 18..51 score
None	No IPR available	SEG	seg	seg	coord: 30..63 score
None	No IPR available	SEG	seg	seg	coord: 7..31 score: NAcoord: 55..67 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:2160756..2162607+
mRNA from alignment at MDC001013.217:218..2069+
coding sequence from alignment at MDC001013.217:218..2069+

mRNA sequence

>MDP0000134492 ID=MDP0000134492; Name=MDP0000134492; organism=Malus x domestica; type=mRNA; length=1852bp
ATGGCGACGACACCCTCCTCCRCTCTCCACCAAAAGTTTMTATCCCTAAA
CTATCCTCCCYTCCATCACAATTCTCAATTCCGCCCTCCCCGTCTCCGCC
GCCCCTCCCGCCATCACTGTCACCCCATTCGCGCCACCTCCACCGTCGCT
CTCCCGCCGGTACCGCCTCATCCTCTGCCCTCTCCCTTTCCGCTTCCATC
YTTTTCCATTTAAATTTCAAATTTCCGATATTGCAGGAGCGGCGGTCGAG
GGCCGAGGAAATCCAAAGCTCCGGCGTTGACCTCGAGGTGCTTGCCTGCC
CAATATGCTACGAACCACTCATCCGAAGGGGGCCGCCGGGTCTCAATCTG
TGAGTAACAGTACGACACAAAGCCTCAGTCTTTTGCTTGAAATTGGYGTC
GTAAGTGTTTCAATTTCGTTTTGTGATTTGCAAATTTTGCAGGCGAGCAA
TTTACAGGTCGGGGTTCAAGTGCAGGAAATGCGACAAGWCGTATTCGAGC
AAAGACRTTTACTTGGACCTTACTGTTACTGCTGGGTTGAAGGAGTACGT
TGAGGTACAACCGWCCSGGACCGAGTTGTTCCGGAGCCCTCTCGTTTCCT
TCTTGTATGAAAGGGGTTGGCGCCAGAATTTTAACCGCAGCGGATTTCCG
GGTCCCGATGAAGAGGTAAATTGGTAAATGTGGTTTCTTGCTAAATTTTT
GGTCAGTTGGGTTAATTTTCTTGCTTAATTTTGAGTTTTGGTTTGCTTAG
CAAGTTTAGGTTCTTAYGTGGTTTGCAGTTTAAGATGGCTCAGGACTACT
TTAAATCCGCCGAAGGCGGTGTTTTGGTGGATGTGAGCTGTGGGAGCGGC
TTGTTTTCGAGGAAGTTTGCGAAATCCGGGACATATTCTGCAGTTGTTGC
ACTTGATTTTTCGGAGAACATGCTTCGGCAGAGYTATGAATTTTTTAAGA
GAGATCCTACTMTTTTAGATACGTAAGTTTGTGTTTGTTCTTCTGAGTGA
TCAATGTTTATGTGGTCTTTGGTAGTGAAATGAGATGTTTATCATTGCTT
ACGGTTCACTGGAATAAGTGCAGTAATCTTGCTCTTGTGAGGGCGGATGT
TGCTAGGCTTCCGTTCCCTTCGGGTTCAGTTGATGCTGTCCATGCCGGCG
CAGCATTGCATTGCTGGCCCTCTCCTTCCAATGCTGTAAGTTGTGTTTCA
TGTGTTTCCTATGTTTCTCTTCTCCCAAAAGGATTTTGTTTTTGCGTTAA
AACAAATATGTTGGCTACCTTTACCTTTTATTGCAATCGGAGATGCTAGT
AATATGCGAAGTCAGAGGATGAATTGCATAGTCTTACACCATTAAACACA
TGAAAGTGTCGTGTTACATCCTCTGAGTGGATCTAAAATCATATGGGGAA
CTAAGCGTTGAACCATTTGATTCTGGCTTCATTGTTAATTAGGAATATGA
GATGAAATGTGAAATAGTGAGTAAACCCCAGGGCCTCTCACAAATGACCA
AAAGAAGTAGGCATCTTACGGTGCCATGGTGTGTGAGAAATAGATGGATG
ATATCTTTTGATCTGTCAAGTTTCTTCTATTCTTTCTGGAAATCACTCAT
ATCAGACCCGAAGGTGTGTCTTAGTGGCTCTTCAACTTGCGTTTGGACAG
CAATTTGAATTCTAATGCCAAACCCTTAGAATTGCATGGAGTGTTTTGGA
TGGGGGACTACATGTGCTAGGAGATTAGCTGAATATTCTTACAGGCTAGC
AGCAGTACATACCTTGTCAGCAAGGAAGAGAGAGAGCAGGTAGTGGTTAA
CAAACCTAACAATCTTATACTGTATGTGGGTCAATTGGAATCAGAAATCT
AA

protein sequence of MDP0000134492

>MDP0000134492 ID=MDP0000134492; Name=MDP0000134492; organism=Malus x domestica; type=polypeptide; length=318bp
MATTPSSXLHQKFXSLNYPPXHHNSQFRPPRLRRPSRHHCHPIRATSTVA
LPPERRSRAEEIQSSGVDLEVLACPICYEPLIRRGPPGLNLRAIYRSGFK
CRKCDKXYSSKDXYLDLTVTAGLKEYVEVQPXXTELFRSPLVSFLYERGW
RQNFNRSGFPGPDEEFKMAQDYFKSAEGGVLVDVSCGSGLFSRKFAKSGT
YSAVVALDFSENMLRQSYEFFKRDPTXLDTEMRCLSLLTVHWNKCSNLAL
VRADVARLPFPSGSVDAVHAGAALHCWPSPSNAASSSTYLVSKEEREQVV
VNKPNNLILYVGQLESEI

mRNA from alignment at chr2:2160756..2162607+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000134492 ID=MDP0000134492; Name=MDP0000134492; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr2:2160756..2162607+ (Malus x domestica

mRNA from alignment at MDC001013.217:218..2069+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000134492 ID=MDP0000134492; Name=MDP0000134492; organism=Malus x domestica; type=mRNA; length=1852bp; location=Sequence derived from: MDC001013.217:218..2069+ (Malus x domestica
ATGGCGACGACACCCTCCTCCRCTCTCCACCAAAAGTTTMTATCCCTAAA
CTATCCTCCCYTCCATCACAATTCTCAATTCCGCCCTCCCCGTCTCCGCC
GCCCCTCCCGCCATCACTGTCACCCCATTCGCGCCACCTCCACCGTCGCT
CTCCCGCCGGTACCGCCTCATCCTCTGCCCTCTCCCTTTCCGCTTCCATC
YTTTTCCATTTAAATTTCAAATTTCCGATATTGCAGGAGCGGCGGTCGAG
GGCCGAGGAAATCCAAAGCTCCGGCGTTGACCTCGAGGTGCTTGCCTGCC
CAATATGCTACGAACCACTCATCCGAAGGGGGCCGCCGGGTCTCAATCTG
TGAGTAACAGTACGACACAAAGCCTCAGTCTTTTGCTTGAAATTGGYGTC
GTAAGTGTTTCAATTTCGTTTTGTGATTTGCAAATTTTGCAGGCGAGCAA
TTTACAGGTCGGGGTTCAAGTGCAGGAAATGCGACAAGWCGTATTCGAGC
AAAGACRTTTACTTGGACCTTACTGTTACTGCTGGGTTGAAGGAGTACGT
TGAGGTACAACCGWCCSGGACCGAGTTGTTCCGGAGCCCTCTCGTTTCCT
TCTTGTATGAAAGGGGTTGGCGCCAGAATTTTAACCGCAGCGGATTTCCG
GGTCCCGATGAAGAGGTAAATTGGTAAATGTGGTTTCTTGCTAAATTTTT
GGTCAGTTGGGTTAATTTTCTTGCTTAATTTTGAGTTTTGGTTTGCTTAG
CAAGTTTAGGTTCTTAYGTGGTTTGCAGTTTAAGATGGCTCAGGACTACT
TTAAATCCGCCGAAGGCGGTGTTTTGGTGGATGTGAGCTGTGGGAGCGGC
TTGTTTTCGAGGAAGTTTGCGAAATCCGGGACATATTCTGCAGTTGTTGC
ACTTGATTTTTCGGAGAACATGCTTCGGCAGAGYTATGAATTTTTTAAGA
GAGATCCTACTMTTTTAGATACGTAAGTTTGTGTTTGTTCTTCTGAGTGA
TCAATGTTTATGTGGTCTTTGGTAGTGAAATGAGATGTTTATCATTGCTT
ACGGTTCACTGGAATAAGTGCAGTAATCTTGCTCTTGTGAGGGCGGATGT
TGCTAGGCTTCCGTTCCCTTCGGGTTCAGTTGATGCTGTCCATGCCGGCG
CAGCATTGCATTGCTGGCCCTCTCCTTCCAATGCTGTAAGTTGTGTTTCA
TGTGTTTCCTATGTTTCTCTTCTCCCAAAAGGATTTTGTTTTTGCGTTAA
AACAAATATGTTGGCTACCTTTACCTTTTATTGCAATCGGAGATGCTAGT
AATATGCGAAGTCAGAGGATGAATTGCATAGTCTTACACCATTAAACACA
TGAAAGTGTCGTGTTACATCCTCTGAGTGGATCTAAAATCATATGGGGAA
CTAAGCGTTGAACCATTTGATTCTGGCTTCATTGTTAATTAGGAATATGA
GATGAAATGTGAAATAGTGAGTAAACCCCAGGGCCTCTCACAAATGACCA
AAAGAAGTAGGCATCTTACGGTGCCATGGTGTGTGAGAAATAGATGGATG
ATATCTTTTGATCTGTCAAGTTTCTTCTATTCTTTCTGGAAATCACTCAT
ATCAGACCCGAAGGTGTGTCTTAGTGGCTCTTCAACTTGCGTTTGGACAG
CAATTTGAATTCTAATGCCAAACCCTTAGAATTGCATGGAGTGTTTTGGA
TGGGGGACTACATGTGCTAGGAGATTAGCTGAATATTCTTACAGGCTAGC
AGCAGTACATACCTTGTCAGCAAGGAAGAGAGAGAGCAGGTAGTGGTTAA
CAAACCTAACAATCTTATACTGTATGTGGGTCAATTGGAATCAGAAATCT
AA

Coding sequence (CDS) from alignment at MDC001013.217:218..2069+

>MDP0000134492 ID=MDP0000134492; Name=MDP0000134492; organism=Malus x domestica; type=CDS; length=957bp; location=Sequence derived from: MDC001013.217:218..2069+ (Malus x domestica
ATGGCGACGACACCCTCCTCCRCTCTCCACCAAAAGTTTMTATCCCTAAA
CTATCCTCCCYTCCATCACAATTCTCAATTCCGCCCTCCCCGTCTCCGCC
GCCCCTCCCGCCATCACTGTCACCCCATTCGCGCCACCTCCACCGTCGCT
CTCCCGCCGGAGCGGCGGTCGAGGGCCGAGGAAATCCAAAGCTCCGGCGT
TGACCTCGAGGTGCTTGCCTGCCCAATATGCTACGAACCACTCATCCGAA
GGGGGCCGCCGGGTCTCAATCTGCGAGCAATTTACAGGTCGGGGTTCAAG
TGCAGGAAATGCGACAAGWCGTATTCGAGCAAAGACRTTTACTTGGACCT
TACTGTTACTGCTGGGTTGAAGGAGTACGTTGAGGTACAACCGWCCSGGA
CCGAGTTGTTCCGGAGCCCTCTCGTTTCCTTCTTGTATGAAAGGGGTTGG
CGCCAGAATTTTAACCGCAGCGGATTTCCGGGTCCCGATGAAGAGTTTAA
GATGGCTCAGGACTACTTTAAATCCGCCGAAGGCGGTGTTTTGGTGGATG
TGAGCTGTGGGAGCGGCTTGTTTTCGAGGAAGTTTGCGAAATCCGGGACA
TATTCTGCAGTTGTTGCACTTGATTTTTCGGAGAACATGCTTCGGCAGAG
YTATGAATTTTTTAAGAGAGATCCTACTMTTTTAGATACTGAAATGAGAT
GTTTATCATTGCTTACGGTTCACTGGAATAAGTGCAGTAATCTTGCTCTT
GTGAGGGCGGATGTTGCTAGGCTTCCGTTCCCTTCGGGTTCAGTTGATGC
TGTCCATGCCGGCGCAGCATTGCATTGCTGGCCCTCTCCTTCCAATGCTG
CTAGCAGCAGTACATACCTTGTCAGCAAGGAAGAGAGAGAGCAGGTAGTG
GTTAACAAACCTAACAATCTTATACTGTATGTGGGTCAATTGGAATCAGA
AATCTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013216	Methyltransf_11

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0008168	methyltransferase activity