MDP0000149711, MDP0000149711 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000149711
Unique Name	MDP0000149711
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	4176

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr1	chromosome	chr1:4031552..4035727 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC007766.38	contig	MDC007766.38:4892..9067 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.0	2012-04-02

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000149711_exon_1	MDP0000149711_exon_1	Malus x domestica	CDS
MDP0000149711_exon_2	MDP0000149711_exon_2	Malus x domestica	CDS
MDP0000149711_exon_3	MDP0000149711_exon_3	Malus x domestica	CDS
MDP0000149711_exon_4	MDP0000149711_exon_4	Malus x domestica	CDS
MDP0000149711_exon_5	MDP0000149711_exon_5	Malus x domestica	CDS
MDP0000149711_exon_6	MDP0000149711_exon_6	Malus x domestica	CDS
MDP0000149711_exon_7	MDP0000149711_exon_7	Malus x domestica	CDS
MDP0000149711_exon_8	MDP0000149711_exon_8	Malus x domestica	CDS
MDP0000149711_exon_9	MDP0000149711_exon_9	Malus x domestica	CDS
MDP0000149711_exon_10	MDP0000149711_exon_10	Malus x domestica	CDS
MDP0000149711_exon_11	MDP0000149711_exon_11	Malus x domestica	CDS
MDP0000149711_exon_12	MDP0000149711_exon_12	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000149711	MDP0000149711	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 58..124 score: 1.9e-12coord: 143..213 score: 3.2e-19coord: 270..323 score: 4.1
IPR000504	RNA recognition motif domain	SMART	SM00360	RNA recognition motif	coord: 57..126 score: 3.3e-16coord: 142..215 score: 3.2e-24coord: 263..326 score: 9.3
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 56..130 score: 15.306coord: 141..219 score: 17.472coord: 262..330 score: 11
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 32..128 score: 2.9e-21coord: 140..219 score: 9e-28coord: 244..327 score: 1.4
None	No IPR available	COIL	coil	coiled-coil	coord: 3..24 score
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 5..409 score: 1.9e
None	No IPR available	PANTHER	PTHR24012:SF210	SUBFAMILY NOT NAMED	coord: 5..409 score: 1.9e
None	No IPR available	SEG	seg	seg	coord: 1..25 score: NAcoord: 340..350 score
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 50..226 score: 1.6e-40coord: 254..357 score: 1.5
None	No IPR available	SEG	seg	seg	coord: 1..24 score: NAcoord: 26..36 score
None	No IPR available	SEG	seg	seg	coord: 21..35 score
None	No IPR available	SEG	seg	seg	coord: 63..86 score
None	No IPR available	SEG	seg	seg	coord: 22..37 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:4031552..4035727-
mRNA from alignment at MDC007766.38:4892..9067-
coding sequence from alignment at MDC007766.38:4892..9067-

mRNA sequence

>MDP0000149711 ID=MDP0000149711; Name=MDP0000149711; organism=Malus x domestica; type=mRNA; length=4176bp
ATGCAGCACCAGAGGCTGAAGCAGCAACAGCAGCAGCAGCAAGCTCTGAT
GCAGCAGGCTCTTCTACAGCAGCATTCTCTCTACCATCCTGGCCTCTTAG
CTCCCCCTCAGGTTCTATCTTGCTCTAATTCTCGTCCTCTGACATCTATT
CTGTTTTCGGGTTCGATTTCCATTTCGATTTTGGTTTTGATTTCCAGCTC
CAATTGTCATTGTATGTGATTGCAGTACGGAATGTAGGGTTASTTGAGTT
ACTCTTCCTTTGAATTACCCGAATCCGCAAGATGGGATTTTTGGGAAATT
TCTGTTGTGGGAAAGTTTTAATTTTAATAGTTTTGTTTTTTGATTGCTTC
TCGTTAGTGAAAAAAAGCTTGGGTGTTATATTTTGGGAGGCTCTGTGATT
GGTGTTGAATAAGGTTAAATAGTTTTTTGTTTTCGTTTTCGTTTTTCGGA
TTTCTGAAATGGGGAAGAATTGTTGGCATCTTGGGACGTTTCGTTATCCT
TATGTCGTACTGAATGGAAAATAGAAATAGGATACTCTGTGTGGTTTTTC
AAATTGTTTTTTTTCGTGCATTGGTGCCTTGGTTGGTGGTGATTTCGAAA
CCTCCAGTAAGTTGCTGATAATAGTTTTCAATAAAGAAGTAAACCAAATA
ACCATTTGGCCCTATCTTAGAAATTTGATAAAGTTCACAGGAGTTGCGCT
TTAGGTTCTTTTTAGTTCCCTGCCAACCATGTTTTTGTCTTGCATAATCA
TTTATTTCCACTACGGACCACTAGTATTTAAGTTTGTCGTTGTTGGGTTC
CAGTGAAAGTACTTAAGTGAATTTTGTTGTTAGGTTCTCATCTTGTTGAT
AACTAAGGGATTTTAGTTTGATTTACGTTTTTATTTTATTTTTTTCTTCT
GGCTTTTTAGGTTCCTTTATTTTCTATTCTTTTTCACATTTTTATTTTGC
AGATAGAGCCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGT
ACTTGCCGCAGTGTGTGAGTATTTGTCTAGACATTTTTTTTTCTTCTTTC
CATTGTAAGTTTTTGTTTGTTTCACCTCTATGCTTATGTAACTATTATGT
TTCTCTGCATTTTGTACCCTTAGTCGATGACTCGATAATGATTGTCTTCA
TTGAATAGCTTTATGATAGGTACATTTTTTCCATGGTTGCTTTTCACTTG
GCCATGCTATATCTTCCTAAAGTAATTTTCAAGCATCTGAAATTACCCAT
CCTTCTCACAAAATTACCCTTTCACTTGCTATGCTTTCTGTCCGAAAAAT
CCAGACAAAGTTAACTATGTGTAACTAAAATTGTCTTTTTTTTCTTTTCT
TTTTTCTTTTTCTTTTTTTTTTKTTTTTTTTTYCYTGGTTCAGAGTGATT
ACTTAGGGTTTAATTTAGTTTCTTTTTTGTCTTCTGGTTTTAAAGTTTTG
TCTACTTTGAAAATTTTCAGGTATGTTGGGAACATCCATACCCAGGTGAC
AGAACCACTTCTTCAAGAGGTTTTTGCAAGTACTGGTGCTGTTGAAAGTT
GCAAACTTATAAGAAAGGAAAAGGTAAGTTTGCAAAGGTGCACATGTTCG
TCCTCGCCTTTTTTTTATCTGATCACTGTTCAACAATCCTCTCGTCATAT
GAAAATTTCTGGACTTGATTAGTTTCCTATGAGCCTAACTCAATTTTACC
GTATGGTGATCATATAATTGATAATTTCTGTTTTCTCTGCCTTCTGCAGT
CATCCTACGGGTTCATTCACTATTTTGATCGTAGATCAGCTGCTCTTGCA
ATAGTGTCTCTAAATGGCAGGCATCTGTAAGTACAAATATGACTTATGCT
CCTTGTTATTTTGGTTGCTTTTATTTGTACTTTCTCTAAAACCTTTGATA
TGTGATCTTCAGGTTTGGGCAGCCTATCAAAGTAAATTGGGCTTATGCTA
GTGGTMAGAGGGAGGATACATCAGGTTGGTTTTTGTTTTTCTTTCTTTGA
ACCGATTTTAATGATGCTTTGGCATTTATCATCTAGGTTAGTTATATACT
GTCTTTCTGATGTGCAGGTCATTTCAACATTTTTGTTGGTGATCTGAGCC
CTGAGGTTACTGATGCTACATTATTTGCATGCTTCTCAGTTTATAACAGT
TGTTCGTAAGTGTCTTCTCAGGCACAGGTTTTCTTAATTTTATCATTCTT
TAATAAAACTTGTGATGGCCAATAGTTAAGACTTGGAAGTTTTAGGTTCA
TCTGTTAACATTTGTTAAGGTTACATTGGAATCCATTATTCGTTTTTCAG
ATGCCTAATTTGATTCTTTTGTTGGTTTTAGAGATGCAAGGGTTATGTGG
GATCAAAAGACGGGGCGTTCAAGAGGCTTTGGGTTCGTCTCATTCCGAAA
CCAACAGGTAGTATTTTTTACGTAACTTTTTACTTTTGTTATCTTTCGGA
ATGCATGGTGAATTCATTTTTATTAATAATCTATTGTGAGTCTGAATGGT
AGTTTCTGATGGACTGGTAACTGAATGCAAGGGATTAGGATGAGAGAACT
TAGGTAACGGCTTGATATAGCGATGTCAAATTTCAAATTTTCTTTTAAAG
AGTCAATAGTTTAGAGCCCAGCCCCTCTGCCTTAATAAGTCTTTCAATTT
GTTACTAAATTGCATCTCATCATACTCTCATTTACTTTTCAGGATGCTCA
AAATGCTATCAATGACTTAACTGGTAAGGATGATGTTCTTCCTATTTAAA
AACTATTTTGACAAGTTTGTTGAAAAAAAATGCAGGCGGGATAAGTACTG
AGGGTTGAAAAAAATTCACCTGTATTCCTTCTCACCATATTCTGAACTAT
CTTTTTGTCTGTGATATCCAGGTAAGTGGCTTGGCAGCAGACAGATACGT
TGCAACTGGGCAACGAAAGGTGCTGGTGCCAATGAAGACAAGCAGAGTTC
AGATGCTAAAAGTGTGGTGGAACTAACAAATGGCTCATCAGGTGAGCTCA
CYGTGWTCAAACTTTTTTYCCWTTKCTAACTTACAAAAGAAGTWATGTYY
AGTTTGACTGGAAAATGRGAGGAAAATAATTTGGTTTGTAGYAATTTCWT
ATACATTYTGTTYTKTKYAMAGTCCTCWGCCYARGACAGACTCATATTCT
GTTTTACTTTTGCAGAAGATGGAAAGGACACAACAAACAGTGAGGCTCCG
GAGAACAACCCTCAGTATACTACTGTTTATGTGGGCAATCTTGCTCCAGA
GGCAAGAAGTTTTCTCATCTCTCTCTCTTGTGCACCGCGCAAACATGGGC
TGTCACACACATTAATTTCTGCCATGCCATGGATATGAATTGATATACAA
GTTTTTTTTTTGTGACAGAACTGAGTTTGAATTTTCTACTATGACTGCTT
CTTAGCTTGAGTTGGTGGTTTTGAAGTTCTCGAAAGAGGAAAAGATGTGG
AGAACAAAATGAATATCTTCGGTACTTGTGGATCACAGAAATTCTAGTAT
CATTAATTTTTATTGGTCTTATTCCTACAGGTCGGTCAGCTCGATCTGCA
TCGGCATTTTCATGCTCTTGGTGTTGGAGTGATTGAGGAAGTTCGGCTGC
AGCGTGACAAGGGCTTTGGTTTTGTGAGATTCAATACACACGCCGAGGCA
ACTCTGGCTATTCAAATGGGAAATACTCAGTCCATCTTGTGTGGTAGACA
ACTAAAGGTGTGCTTCTATGCTTAGTTTAGAGATGTTATAAATTCAAGTA
TTATCGGCACACAAAAGGTAGTGGACTGGATCGGCCGATCTTACTGGGAC
ATCGTGTAGAGATCCATATACGTACATCTACTGTAAAAGTTTTTATTTTT
TCTATGTGTGCATTGACTGTTGATTGTTTATTATGTAGTGCTCATGGGGT
AGCAAGCCTACTCCACCTGGAACAGTTTCAAACCCACTCCCACCGCCAGT
AGCGGCACCACCTTTGCAGGGCCTCTCTGCAACCGACATTTTGGCCTATG
AACGGCAACTGGCAATGAGCAAGATGGCTGGTGTCCATGCCCTCATGCAC
CCTCAGGGACAGCATCCCCTTAAGCAGGCAGCAATGGGAATGGGCACTGC
TGGAGCAAGCCAAGCTATATACGACGGTGGATTCCAGAATGTTGCTGCTG
CCCAGCAGCTCATGTACTACCAGTAA

protein sequence of MDP0000149711

>MDP0000149711 ID=MDP0000149711; Name=MDP0000149711; organism=Malus x domestica; type=polypeptide; length=419bp
MQHQRLKQQQQQQQALMQQALLQQHSLYHPGLLAPPQIEPIPSGNLPPGF
DPSTCRSVYVGNIHTQVTEPLLQEVFASTGAVESCKLIRKEKSSYGFIHY
FDRRSAALAIVSLNGRHLFGQPIKVNWAYASGXREDTSGHFNIFVGDLSP
EVTDATLFACFSVYNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAIN
DLTGKWLGSRQIRCNWATKGAGANEDKQSSDAKSVVELTNGSSEDGKDTT
NSEAPENNPQYTTVYVGQLDLHRHFHALGVGVIEEVRLQRDKGFGFVRFN
THAEATLAIQMGNTQSILCGRQLKCSWGSKPTPPGTVSNPLPPPVAAPPL
QGLSATDILAYERQLAMSKMAGVHALMHPQGQHPLKQAAMGMGTAGASQA
IYDGGFQNVAAAQQLMYYQ

mRNA from alignment at chr1:4031552..4035727-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000149711 ID=MDP0000149711; Name=MDP0000149711; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr1:4031552..4035727- (Malus x domestica

mRNA from alignment at MDC007766.38:4892..9067-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000149711 ID=MDP0000149711; Name=MDP0000149711; organism=Malus x domestica; type=mRNA; length=4176bp; location=Sequence derived from: MDC007766.38:4892..9067- (Malus x domestica
ATGCAGCACCAGAGGCTGAAGCAGCAACAGCAGCAGCAGCAAGCTCTGAT
GCAGCAGGCTCTTCTACAGCAGCATTCTCTCTACCATCCTGGCCTCTTAG
CTCCCCCTCAGGTTCTATCTTGCTCTAATTCTCGTCCTCTGACATCTATT
CTGTTTTCGGGTTCGATTTCCATTTCGATTTTGGTTTTGATTTCCAGCTC
CAATTGTCATTGTATGTGATTGCAGTACGGAATGTAGGGTTASTTGAGTT
ACTCTTCCTTTGAATTACCCGAATCCGCAAGATGGGATTTTTGGGAAATT
TCTGTTGTGGGAAAGTTTTAATTTTAATAGTTTTGTTTTTTGATTGCTTC
TCGTTAGTGAAAAAAAGCTTGGGTGTTATATTTTGGGAGGCTCTGTGATT
GGTGTTGAATAAGGTTAAATAGTTTTTTGTTTTCGTTTTCGTTTTTCGGA
TTTCTGAAATGGGGAAGAATTGTTGGCATCTTGGGACGTTTCGTTATCCT
TATGTCGTACTGAATGGAAAATAGAAATAGGATACTCTGTGTGGTTTTTC
AAATTGTTTTTTTTCGTGCATTGGTGCCTTGGTTGGTGGTGATTTCGAAA
CCTCCAGTAAGTTGCTGATAATAGTTTTCAATAAAGAAGTAAACCAAATA
ACCATTTGGCCCTATCTTAGAAATTTGATAAAGTTCACAGGAGTTGCGCT
TTAGGTTCTTTTTAGTTCCCTGCCAACCATGTTTTTGTCTTGCATAATCA
TTTATTTCCACTACGGACCACTAGTATTTAAGTTTGTCGTTGTTGGGTTC
CAGTGAAAGTACTTAAGTGAATTTTGTTGTTAGGTTCTCATCTTGTTGAT
AACTAAGGGATTTTAGTTTGATTTACGTTTTTATTTTATTTTTTTCTTCT
GGCTTTTTAGGTTCCTTTATTTTCTATTCTTTTTCACATTTTTATTTTGC
AGATAGAGCCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGT
ACTTGCCGCAGTGTGTGAGTATTTGTCTAGACATTTTTTTTTCTTCTTTC
CATTGTAAGTTTTTGTTTGTTTCACCTCTATGCTTATGTAACTATTATGT
TTCTCTGCATTTTGTACCCTTAGTCGATGACTCGATAATGATTGTCTTCA
TTGAATAGCTTTATGATAGGTACATTTTTTCCATGGTTGCTTTTCACTTG
GCCATGCTATATCTTCCTAAAGTAATTTTCAAGCATCTGAAATTACCCAT
CCTTCTCACAAAATTACCCTTTCACTTGCTATGCTTTCTGTCCGAAAAAT
CCAGACAAAGTTAACTATGTGTAACTAAAATTGTCTTTTTTTTCTTTTCT
TTTTTCTTTTTCTTTTTTTTTTKTTTTTTTTTYCYTGGTTCAGAGTGATT
ACTTAGGGTTTAATTTAGTTTCTTTTTTGTCTTCTGGTTTTAAAGTTTTG
TCTACTTTGAAAATTTTCAGGTATGTTGGGAACATCCATACCCAGGTGAC
AGAACCACTTCTTCAAGAGGTTTTTGCAAGTACTGGTGCTGTTGAAAGTT
GCAAACTTATAAGAAAGGAAAAGGTAAGTTTGCAAAGGTGCACATGTTCG
TCCTCGCCTTTTTTTTATCTGATCACTGTTCAACAATCCTCTCGTCATAT
GAAAATTTCTGGACTTGATTAGTTTCCTATGAGCCTAACTCAATTTTACC
GTATGGTGATCATATAATTGATAATTTCTGTTTTCTCTGCCTTCTGCAGT
CATCCTACGGGTTCATTCACTATTTTGATCGTAGATCAGCTGCTCTTGCA
ATAGTGTCTCTAAATGGCAGGCATCTGTAAGTACAAATATGACTTATGCT
CCTTGTTATTTTGGTTGCTTTTATTTGTACTTTCTCTAAAACCTTTGATA
TGTGATCTTCAGGTTTGGGCAGCCTATCAAAGTAAATTGGGCTTATGCTA
GTGGTMAGAGGGAGGATACATCAGGTTGGTTTTTGTTTTTCTTTCTTTGA
ACCGATTTTAATGATGCTTTGGCATTTATCATCTAGGTTAGTTATATACT
GTCTTTCTGATGTGCAGGTCATTTCAACATTTTTGTTGGTGATCTGAGCC
CTGAGGTTACTGATGCTACATTATTTGCATGCTTCTCAGTTTATAACAGT
TGTTCGTAAGTGTCTTCTCAGGCACAGGTTTTCTTAATTTTATCATTCTT
TAATAAAACTTGTGATGGCCAATAGTTAAGACTTGGAAGTTTTAGGTTCA
TCTGTTAACATTTGTTAAGGTTACATTGGAATCCATTATTCGTTTTTCAG
ATGCCTAATTTGATTCTTTTGTTGGTTTTAGAGATGCAAGGGTTATGTGG
GATCAAAAGACGGGGCGTTCAAGAGGCTTTGGGTTCGTCTCATTCCGAAA
CCAACAGGTAGTATTTTTTACGTAACTTTTTACTTTTGTTATCTTTCGGA
ATGCATGGTGAATTCATTTTTATTAATAATCTATTGTGAGTCTGAATGGT
AGTTTCTGATGGACTGGTAACTGAATGCAAGGGATTAGGATGAGAGAACT
TAGGTAACGGCTTGATATAGCGATGTCAAATTTCAAATTTTCTTTTAAAG
AGTCAATAGTTTAGAGCCCAGCCCCTCTGCCTTAATAAGTCTTTCAATTT
GTTACTAAATTGCATCTCATCATACTCTCATTTACTTTTCAGGATGCTCA
AAATGCTATCAATGACTTAACTGGTAAGGATGATGTTCTTCCTATTTAAA
AACTATTTTGACAAGTTTGTTGAAAAAAAATGCAGGCGGGATAAGTACTG
AGGGTTGAAAAAAATTCACCTGTATTCCTTCTCACCATATTCTGAACTAT
CTTTTTGTCTGTGATATCCAGGTAAGTGGCTTGGCAGCAGACAGATACGT
TGCAACTGGGCAACGAAAGGTGCTGGTGCCAATGAAGACAAGCAGAGTTC
AGATGCTAAAAGTGTGGTGGAACTAACAAATGGCTCATCAGGTGAGCTCA
CYGTGWTCAAACTTTTTTYCCWTTKCTAACTTACAAAAGAAGTWATGTYY
AGTTTGACTGGAAAATGRGAGGAAAATAATTTGGTTTGTAGYAATTTCWT
ATACATTYTGTTYTKTKYAMAGTCCTCWGCCYARGACAGACTCATATTCT
GTTTTACTTTTGCAGAAGATGGAAAGGACACAACAAACAGTGAGGCTCCG
GAGAACAACCCTCAGTATACTACTGTTTATGTGGGCAATCTTGCTCCAGA
GGCAAGAAGTTTTCTCATCTCTCTCTCTTGTGCACCGCGCAAACATGGGC
TGTCACACACATTAATTTCTGCCATGCCATGGATATGAATTGATATACAA
GTTTTTTTTTTGTGACAGAACTGAGTTTGAATTTTCTACTATGACTGCTT
CTTAGCTTGAGTTGGTGGTTTTGAAGTTCTCGAAAGAGGAAAAGATGTGG
AGAACAAAATGAATATCTTCGGTACTTGTGGATCACAGAAATTCTAGTAT
CATTAATTTTTATTGGTCTTATTCCTACAGGTCGGTCAGCTCGATCTGCA
TCGGCATTTTCATGCTCTTGGTGTTGGAGTGATTGAGGAAGTTCGGCTGC
AGCGTGACAAGGGCTTTGGTTTTGTGAGATTCAATACACACGCCGAGGCA
ACTCTGGCTATTCAAATGGGAAATACTCAGTCCATCTTGTGTGGTAGACA
ACTAAAGGTGTGCTTCTATGCTTAGTTTAGAGATGTTATAAATTCAAGTA
TTATCGGCACACAAAAGGTAGTGGACTGGATCGGCCGATCTTACTGGGAC
ATCGTGTAGAGATCCATATACGTACATCTACTGTAAAAGTTTTTATTTTT
TCTATGTGTGCATTGACTGTTGATTGTTTATTATGTAGTGCTCATGGGGT
AGCAAGCCTACTCCACCTGGAACAGTTTCAAACCCACTCCCACCGCCAGT
AGCGGCACCACCTTTGCAGGGCCTCTCTGCAACCGACATTTTGGCCTATG
AACGGCAACTGGCAATGAGCAAGATGGCTGGTGTCCATGCCCTCATGCAC
CCTCAGGGACAGCATCCCCTTAAGCAGGCAGCAATGGGAATGGGCACTGC
TGGAGCAAGCCAAGCTATATACGACGGTGGATTCCAGAATGTTGCTGCTG
CCCAGCAGCTCATGTACTACCAGTAA

Coding sequence (CDS) from alignment at MDC007766.38:4892..9067-

>MDP0000149711 ID=MDP0000149711; Name=MDP0000149711; organism=Malus x domestica; type=CDS; length=1260bp; location=Sequence derived from: MDC007766.38:4892..9067- (Malus x domestica
ATGCAGCACCAGAGGCTGAAGCAGCAACAGCAGCAGCAGCAAGCTCTGAT
GCAGCAGGCTCTTCTACAGCAGCATTCTCTCTACCATCCTGGCCTCTTAG
CTCCCCCTCAGATAGAGCCAATCCCAAGTGGAAATCTGCCTCCTGGTTTT
GATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAACATCCATACCCAGGT
GACAGAACCACTTCTTCAAGAGGTTTTTGCAAGTACTGGTGCTGTTGAAA
GTTGCAAACTTATAAGAAAGGAAAAGTCATCCTACGGGTTCATTCACTAT
TTTGATCGTAGATCAGCTGCTCTTGCAATAGTGTCTCTAAATGGCAGGCA
TCTGTTTGGGCAGCCTATCAAAGTAAATTGGGCTTATGCTAGTGGTMAGA
GGGAGGATACATCAGGTCATTTCAACATTTTTGTTGGTGATCTGAGCCCT
GAGGTTACTGATGCTACATTATTTGCATGCTTCTCAGTTTATAACAGTTG
TTCAGATGCAAGGGTTATGTGGGATCAAAAGACGGGGCGTTCAAGAGGCT
TTGGGTTCGTCTCATTCCGAAACCAACAGGATGCTCAAAATGCTATCAAT
GACTTAACTGGTAAGTGGCTTGGCAGCAGACAGATACGTTGCAACTGGGC
AACGAAAGGTGCTGGTGCCAATGAAGACAAGCAGAGTTCAGATGCTAAAA
GTGTGGTGGAACTAACAAATGGCTCATCAGAAGATGGAAAGGACACAACA
AACAGTGAGGCTCCGGAGAACAACCCTCAGTATACTACTGTTTATGTCGG
TCAGCTCGATCTGCATCGGCATTTTCATGCTCTTGGTGTTGGAGTGATTG
AGGAAGTTCGGCTGCAGCGTGACAAGGGCTTTGGTTTTGTGAGATTCAAT
ACACACGCCGAGGCAACTCTGGCTATTCAAATGGGAAATACTCAGTCCAT
CTTGTGTGGTAGACAACTAAAGTGCTCATGGGGTAGCAAGCCTACTCCAC
CTGGAACAGTTTCAAACCCACTCCCACCGCCAGTAGCGGCACCACCTTTG
CAGGGCCTCTCTGCAACCGACATTTTGGCCTATGAACGGCAACTGGCAAT
GAGCAAGATGGCTGGTGTCCATGCCCTCATGCACCCTCAGGGACAGCATC
CCCTTAAGCAGGCAGCAATGGGAATGGGCACTGCTGGAGCAAGCCAAGCT
ATATACGACGGTGGATTCCAGAATGTTGCTGCTGCCCAGCAGCTCATGTA
CTACCAGTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding