MDP0000155190, MDP0000155190 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000155190
Unique NameMDP0000155190
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1855
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.02012-04-02
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000155190_exon_1MDP0000155190_exon_1Malus x domesticaCDS
MDP0000155190_exon_2MDP0000155190_exon_2Malus x domesticaCDS
MDP0000155190_exon_3MDP0000155190_exon_3Malus x domesticaCDS
MDP0000155190_exon_4MDP0000155190_exon_4Malus x domesticaCDS
MDP0000155190_exon_5MDP0000155190_exon_5Malus x domesticaCDS
MDP0000155190_exon_6MDP0000155190_exon_6Malus x domesticaCDS
MDP0000155190_exon_7MDP0000155190_exon_7Malus x domesticaCDS
MDP0000155190_exon_8MDP0000155190_exon_8Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000155190MDP0000155190Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001328Peptidyl-tRNA hydrolaseGENE3D3.40.50.1470no descriptioncoord: 60..249
score: 7.1
IPR001328Peptidyl-tRNA hydrolaseHAMAPMF_00083Pept_tRNA_hydro_bactcoord: 64..239
score: 31
IPR001328Peptidyl-tRNA hydrolasePANTHERPTHR17224FAMILY NOT NAMEDcoord: 24..253
score: 1.8
IPR001328Peptidyl-tRNA hydrolasePFAMPF01195Pept_tRNA_hydrocoord: 66..243
score: 2
IPR001328Peptidyl-tRNA hydrolaseTIGRFAMsTIGR00447pth: peptidyl-tRNA hydrolasecoord: 66..243
score: 5.1
IPR001328Peptidyl-tRNA hydrolaseSUPERFAMILY53178Peptidyl-tRNA hydrolase-likecoord: 62..249
score: 1.9
IPR018171Peptidyl-tRNA hydrolase, conserved sitePROSITEPS01195PEPT_TRNA_HYDROL_1coord: 77..90
score
IPR018171Peptidyl-tRNA hydrolase, conserved sitePROSITEPS01196PEPT_TRNA_HYDROL_2coord: 167..177
score
NoneNo IPR availableSEGsegsegcoord: 38..50
score
NoneNo IPR availableSEGsegsegcoord: 5..34
score
NoneNo IPR availableSEGsegsegcoord: 12..24
score
NoneNo IPR availableSEGsegsegcoord: 89..110
score
NoneNo IPR availableSEGsegsegcoord: 1..13
score
NoneNo IPR availableSEGsegsegcoord: 42..57
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000155190 ID=MDP0000155190; Name=MDP0000155190; organism=Malus x domestica; type=mRNA; length=1855bp
ATGAACGTTGCTGCTTCCCTATCATCCATCGCCACCGTCCGCTTCCCCAA
TTGCCACCGCTGCTTCGGCTTCTCAAAACCCCTAATTCAATCTCCGTCGC
TTTGGATAATGGCCCAATTCTCGTCATCGCAATCTCCCTCCGCCGCGCCG
GAAACGGCGGTTGTGGAAGCCAAGACGCCGCCCAAGCAGCCGTGGCTCAT
CGTCGGCCTCGGAAACCCCGGGAAGAAGTACAACAGCACCCGCCACAATG
TCCGTACGGCCCCTCTTTCGAATTGACACACAAAGTTCAATACTTTGATC
CTCATACTTGTGTTAAATCTTGTTGTTTGATAACCCAATTGCTCATATTT
CGTAATTTTTGAATCTAAAGCTTGCAATTTATGGTGGTGATGTTTTCGCA
GGTGGGTTTTGAGATGGTGGATGCCATTGCTGAAGCTGAAGGGATACCTT
TGAGCAGTGTTTCTTTCAAAGCCCTTGTTGGAAAAGGTTTGTTTGCTTTA
AATTTAGTTATCATTTTCAAAAGATTGCATATGGAGAAGTTTTGTTATGT
TGATTGTATGATTATCTGCACTTGACAAAATATTGTTTGATTGATTGTGG
ATGTACTTAACCAAACCCGCAACTGAATTCGCTAACATTGTTCTACGCGT
TCACCTTCGCATAATGTTCTGCATATATTTTTCGTATGTCTCTAACCATT
TAATACCATTTACAATCTCATTTTGTTATGAGTTTTATGGCTGCTTTATG
GAGCTTACGGATGAATATTTCTTTACTTTGTTTTCAAGATTCCCAGTTGT
TAGGGAAAGTTATAATCTTCATTGAGCTTCGTTTTCATGTTCTCCAGGTC
TTATTGGGGATGTTCCGGTTATATTTGCCAAACCACAAACTTACATGAAT
AAAAGCGGTGAGTCTGTAAGTAAACTATCTCAAAATTTGTCTTGATGCTT
TGATGTGTTTCGGTGATAATTGGTTGACAATTGGACTCTTCTGTTGAAGG
TTGGATCCATTGTTTCGTATTACAAGATTCCATTGAAGCAAGTACTTGTG
GTGCAGTTTCTCTCCTTTACTTAATCACTATTATTTTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCATTTTCCTTCCCCGAGTCAGAGTGTCCT
GTTTCTCTATCATGCTCTAAGTTTGTGGTTCCCGTTTTCAGATATTTGAT
GATCTAGATCTTCCCTTTGGAAAACTGCGGATGTTGCCGAAAGGTGGACA
TGGAGGACACAATGGGTAATTATACAATGCCACCATAGCAGTCTGTTGTT
GCTAATATAGTAGTTTTTCTGTTAGATTTAACTCAATAAGTAAAGGGAAA
TAGAATTCAAAATGGCATAATGATTCTTGATTGGTTCCTGTCATCTGCTT
TCTCTTGCAGGATGAGGAGTGTCATTGATCACTTTAAAGGGAGTCGAGAT
TTTCCTCGTTTAAGAATCGGTACTTCCCCTAGACCACCAAAAGTGTTTCT
CTAGTACTTTATATATTACGCATTAAGGAAAAAGAACCTCATATGTTACT
TTTGTCATTAAATTGGTGAAATTTGTATAGGCATTGGACGCCCTCCTGGG
AAAATGGATCCTATCAACTTTGTTCTTCGTCCGTTCACTAAACAAGAACA
ACAGGAGGTTTGTAAAGTTTCTAATGCAACCTCTAGAGAGGCTTATGTAT
AGATTGCATTGGTGATTCTAACTACTAGAAATACTTTTCAGCTGAATTTT
ACGTTTCAAGAAGGTGTAGAAGCGGTGCGTATTCTTTTGCTTGAGGGGTT
CAACAAAAGCGCAACTTTTGTTAACAGTGCCAAACCCTTGGAACAATGCG
GTTAA
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protein sequence of MDP0000155190

>MDP0000155190 ID=MDP0000155190; Name=MDP0000155190; organism=Malus x domestica; type=polypeptide; length=255bp
MNVAASLSSIATVRFPNCHRCFGFSKPLIQSPSLWIMAQFSSSQSPSAAP
ETAVVEAKTPPKQPWLIVGLGNPGKKYNSTRHNVGFEMVDAIAEAEGIPL
SSVSFKALVGKGLIGDVPVIFAKPQTYMNKSGESVGSIVSYYKIPLKQIF
DDLDLPFGKLRMLPKGGHGGHNGMRSVIDHFKGSRDFPRLRIGIGRPPGK
MDPINFVLRPFTKQEQQELNFTFQEGVEAVRILLLEGFNKSATFVNSAKP
LEQCG
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mRNA from alignment at chr6:22668197..22670051+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000155190 ID=MDP0000155190; Name=MDP0000155190; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr6:22668197..22670051+ (Malus x domestica
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mRNA from alignment at MDC000851.382:9583..11437+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000155190 ID=MDP0000155190; Name=MDP0000155190; organism=Malus x domestica; type=mRNA; length=1855bp; location=Sequence derived from: MDC000851.382:9583..11437+ (Malus x domestica
ATGAACGTTGCTGCTTCCCTATCATCCATCGCCACCGTCCGCTTCCCCAA
TTGCCACCGCTGCTTCGGCTTCTCAAAACCCCTAATTCAATCTCCGTCGC
TTTGGATAATGGCCCAATTCTCGTCATCGCAATCTCCCTCCGCCGCGCCG
GAAACGGCGGTTGTGGAAGCCAAGACGCCGCCCAAGCAGCCGTGGCTCAT
CGTCGGCCTCGGAAACCCCGGGAAGAAGTACAACAGCACCCGCCACAATG
TCCGTACGGCCCCTCTTTCGAATTGACACACAAAGTTCAATACTTTGATC
CTCATACTTGTGTTAAATCTTGTTGTTTGATAACCCAATTGCTCATATTT
CGTAATTTTTGAATCTAAAGCTTGCAATTTATGGTGGTGATGTTTTCGCA
GGTGGGTTTTGAGATGGTGGATGCCATTGCTGAAGCTGAAGGGATACCTT
TGAGCAGTGTTTCTTTCAAAGCCCTTGTTGGAAAAGGTTTGTTTGCTTTA
AATTTAGTTATCATTTTCAAAAGATTGCATATGGAGAAGTTTTGTTATGT
TGATTGTATGATTATCTGCACTTGACAAAATATTGTTTGATTGATTGTGG
ATGTACTTAACCAAACCCGCAACTGAATTCGCTAACATTGTTCTACGCGT
TCACCTTCGCATAATGTTCTGCATATATTTTTCGTATGTCTCTAACCATT
TAATACCATTTACAATCTCATTTTGTTATGAGTTTTATGGCTGCTTTATG
GAGCTTACGGATGAATATTTCTTTACTTTGTTTTCAAGATTCCCAGTTGT
TAGGGAAAGTTATAATCTTCATTGAGCTTCGTTTTCATGTTCTCCAGGTC
TTATTGGGGATGTTCCGGTTATATTTGCCAAACCACAAACTTACATGAAT
AAAAGCGGTGAGTCTGTAAGTAAACTATCTCAAAATTTGTCTTGATGCTT
TGATGTGTTTCGGTGATAATTGGTTGACAATTGGACTCTTCTGTTGAAGG
TTGGATCCATTGTTTCGTATTACAAGATTCCATTGAAGCAAGTACTTGTG
GTGCAGTTTCTCTCCTTTACTTAATCACTATTATTTTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCATTTTCCTTCCCCGAGTCAGAGTGTCCT
GTTTCTCTATCATGCTCTAAGTTTGTGGTTCCCGTTTTCAGATATTTGAT
GATCTAGATCTTCCCTTTGGAAAACTGCGGATGTTGCCGAAAGGTGGACA
TGGAGGACACAATGGGTAATTATACAATGCCACCATAGCAGTCTGTTGTT
GCTAATATAGTAGTTTTTCTGTTAGATTTAACTCAATAAGTAAAGGGAAA
TAGAATTCAAAATGGCATAATGATTCTTGATTGGTTCCTGTCATCTGCTT
TCTCTTGCAGGATGAGGAGTGTCATTGATCACTTTAAAGGGAGTCGAGAT
TTTCCTCGTTTAAGAATCGGTACTTCCCCTAGACCACCAAAAGTGTTTCT
CTAGTACTTTATATATTACGCATTAAGGAAAAAGAACCTCATATGTTACT
TTTGTCATTAAATTGGTGAAATTTGTATAGGCATTGGACGCCCTCCTGGG
AAAATGGATCCTATCAACTTTGTTCTTCGTCCGTTCACTAAACAAGAACA
ACAGGAGGTTTGTAAAGTTTCTAATGCAACCTCTAGAGAGGCTTATGTAT
AGATTGCATTGGTGATTCTAACTACTAGAAATACTTTTCAGCTGAATTTT
ACGTTTCAAGAAGGTGTAGAAGCGGTGCGTATTCTTTTGCTTGAGGGGTT
CAACAAAAGCGCAACTTTTGTTAACAGTGCCAAACCCTTGGAACAATGCG
GTTAA
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Coding sequence (CDS) from alignment at MDC000851.382:9583..11437+

>MDP0000155190 ID=MDP0000155190; Name=MDP0000155190; organism=Malus x domestica; type=CDS; length=768bp; location=Sequence derived from: MDC000851.382:9583..11437+ (Malus x domestica
ATGAACGTTGCTGCTTCCCTATCATCCATCGCCACCGTCCGCTTCCCCAA
TTGCCACCGCTGCTTCGGCTTCTCAAAACCCCTAATTCAATCTCCGTCGC
TTTGGATAATGGCCCAATTCTCGTCATCGCAATCTCCCTCCGCCGCGCCG
GAAACGGCGGTTGTGGAAGCCAAGACGCCGCCCAAGCAGCCGTGGCTCAT
CGTCGGCCTCGGAAACCCCGGGAAGAAGTACAACAGCACCCGCCACAATG
TGGGTTTTGAGATGGTGGATGCCATTGCTGAAGCTGAAGGGATACCTTTG
AGCAGTGTTTCTTTCAAAGCCCTTGTTGGAAAAGGTCTTATTGGGGATGT
TCCGGTTATATTTGCCAAACCACAAACTTACATGAATAAAAGCGGTGAGT
CTGTTGGATCCATTGTTTCGTATTACAAGATTCCATTGAAGCAAATATTT
GATGATCTAGATCTTCCCTTTGGAAAACTGCGGATGTTGCCGAAAGGTGG
ACATGGAGGACACAATGGGATGAGGAGTGTCATTGATCACTTTAAAGGGA
GTCGAGATTTTCCTCGTTTAAGAATCGGCATTGGACGCCCTCCTGGGAAA
ATGGATCCTATCAACTTTGTTCTTCGTCCGTTCACTAAACAAGAACAACA
GGAGCTGAATTTTACGTTTCAAGAAGGTGTAGAAGCGGTGCGTATTCTTT
TGCTTGAGGGGTTCAACAAAAGCGCAACTTTTGTTAACAGTGCCAAACCC
TTGGAACAATGCGGTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001328Pept_tRNA_hydro
Vocabulary: Molecular Function
TermDefinition
GO:0004045aminoacyl-tRNA hydrolase activity