MDP0000166468, MDP0000166468 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000166468
Unique NameMDP0000166468
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1501
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000166468_exon_1MDP0000166468_exon_1Malus x domesticaCDS
MDP0000166468_exon_2MDP0000166468_exon_2Malus x domesticaCDS
MDP0000166468_exon_3MDP0000166468_exon_3Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000166468MDP0000166468Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005067Fatty acid desaturase, type 2PIRPIRSF000346Delta-9 acyl-ACP desaturasecoord: 12..270
score: 9.5
IPR005067Fatty acid desaturase, type 2PFAMPF03405FA_desaturase_2coord: 68..190
score: 4.9e-59coord: 190..268
score: 6.7
IPR009078Ferritin/ribonucleotide reductase-likeSUPERFAMILY47240Ferritin-likecoord: 53..189
score: 2.5e-42coord: 190..270
score: 1.7
IPR012348Ribonucleotide reductase-relatedGENE3D1.10.620.20no descriptioncoord: 60..190
score: 1.6e-59coord: 191..269
score: 2

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000166468 ID=MDP0000166468; Name=MDP0000166468; organism=Malus x domestica; type=mRNA; length=1501bp
ATGACGAGCTGCCTAACACCTCCCAAGTGCGCCATGGCCTCATCCAGTGC
TAGTACTACTCTCGGCCCAGCAGCTTCCAAGTGAGAAACTTCAGAGACTA
CGTAGTAATAATTACTAATCTTATAATTTGCTTTTCTTGGTTTACTAACT
GTTGTTATTATTTTGTGCTGTTAATATCAATTATGTATCAAGTGTGTGTG
TGTGTGTGTATGTCAAGATAAATTTATACATTCGAACTGGGCTAGTTAGC
TTTAATTATTGTACATGCATGCTTGCAGAGAAAGAGAGCTCAGGATTGAT
GAGATTAACAATAGAAATGGGAATTATGTACACAATTACAAGAAGGCTTT
CATGCCTCGGCGGGAGTTGCGTTATCAAGAAATCACACATTCTATGCCAA
GTCAAAAGATTGAGATATTCAAATACCTAGAGGACTGGGCTGAGCACAAC
ATTTTGGTTCACTTGAAACCAGTTGACAAGTGTTGGCAACCTCAAGATTT
TCTTCCTCACTCTCGAACTACTGGCGATACGGATGGATTTCTTGAGCAAG
TCAAGGAACTGAGGGAGAGGGCAAATGAGATTCCTGATGATTACTTTGTT
GTTTTGGTCGGAAACATGATCACTGAAGACGCCCTTCCGACTTACCAAAC
GATGCTTAATACATTGGATGGAGTTCAAGATGAAACAGGTTCAAGCCCTA
TTTCTTGGGCAGTTTGGAACAGGGCATGGACTGCTGAAGAGAACAGGCAT
GGGGACCTTCTCAATAAGTATCTCTATCTATCACTGGACGAGTCGACATG
GCCCAAATTGAGAGGACCATTCAGTATCTGATTACTTATGGAATGGTATT
TACTTAGGACCCCTAGCTAATTTATTAACTTAATCACTTAACGTCTTTTA
ATGTGTTTAATTAGTTTTCTTTGTGTATGCATATAAACGTATGTGCTTAG
GATCCCGGGGCTGAGAACAACCCTTACTTGGCCTTCATATACACTTCATT
CCTGGAAAGGGCTACCGCTATCTCTCATGGGAACACTGCCAAACTTGCCA
AGGAGCATGGGGACTTGAAGTTGGCGCAAATATGCGGTACAATAGCCTCC
GATGAGAAGCGCCRTGAGGCGGCCTACAMAAAGATAGTGGCAAAGCTGWT
TKWRCAGTCATTTCTTTAGCTCACRTGATGWAGAAGCAAATCACTATGCC
CGCTCACTTGATGTATGATGGTCGTGATCACCACCTTTTCCACCACTTTT
CCAGTGTTGCGCAGCGCCTTGGAKTATATACCACCAATGACTATGCCGAT
ATACTGGAGTTGTTGCTCTCCGTGTGGAAGGTTGAAACCCTAACCGGACT
TTCACCTGAGGGCCGAAAGGCTCAGGATTATGTTTGTGGGTTGGCCCYAA
GAATAAGAAAACTGGAGGAAAGAGTTCAATTAAGGGACAAGCGACCACTC
ACCTCCGTACCTATCAGTTGGATCTTTGGTGGACAAGTGAGGGTCATCTG
A
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protein sequence of MDP0000166468

>MDP0000166468 ID=MDP0000166468; Name=MDP0000166468; organism=Malus x domestica; type=polypeptide; length=271bp
MTSCLTPPKCAMASSSASTTLGPAASKERELRIDEINNRNGNYVHNYKKA
FMPRRELRYQEITHSMPSQKIEIFKYLEDWAEHNILVHLKPVDKCWQPQD
FLPHSRTTGDTDGFLEQVKELRERANEIPDDYFVVLVGNMITEDALPTYQ
TMLNTLDGVQDETGSSPISWAVWNRAWTAEENRHGDLLNNVAQRLGXYTT
NDYADILELLLSVWKVETLTGLSPEGRKAQDYVCGLAXRIRKLEERVQLR
DKRPLTSVPISWIFGGQVRVI
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mRNA from alignment at chr4:1181482..1182982+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000166468 ID=MDP0000166468; Name=MDP0000166468; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr4:1181482..1182982+ (Malus x domestica
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mRNA from alignment at MDC005579.302:2782..4282+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000166468 ID=MDP0000166468; Name=MDP0000166468; organism=Malus x domestica; type=mRNA; length=1501bp; location=Sequence derived from: MDC005579.302:2782..4282+ (Malus x domestica
ATGACGAGCTGCCTAACACCTCCCAAGTGCGCCATGGCCTCATCCAGTGC
TAGTACTACTCTCGGCCCAGCAGCTTCCAAGTGAGAAACTTCAGAGACTA
CGTAGTAATAATTACTAATCTTATAATTTGCTTTTCTTGGTTTACTAACT
GTTGTTATTATTTTGTGCTGTTAATATCAATTATGTATCAAGTGTGTGTG
TGTGTGTGTATGTCAAGATAAATTTATACATTCGAACTGGGCTAGTTAGC
TTTAATTATTGTACATGCATGCTTGCAGAGAAAGAGAGCTCAGGATTGAT
GAGATTAACAATAGAAATGGGAATTATGTACACAATTACAAGAAGGCTTT
CATGCCTCGGCGGGAGTTGCGTTATCAAGAAATCACACATTCTATGCCAA
GTCAAAAGATTGAGATATTCAAATACCTAGAGGACTGGGCTGAGCACAAC
ATTTTGGTTCACTTGAAACCAGTTGACAAGTGTTGGCAACCTCAAGATTT
TCTTCCTCACTCTCGAACTACTGGCGATACGGATGGATTTCTTGAGCAAG
TCAAGGAACTGAGGGAGAGGGCAAATGAGATTCCTGATGATTACTTTGTT
GTTTTGGTCGGAAACATGATCACTGAAGACGCCCTTCCGACTTACCAAAC
GATGCTTAATACATTGGATGGAGTTCAAGATGAAACAGGTTCAAGCCCTA
TTTCTTGGGCAGTTTGGAACAGGGCATGGACTGCTGAAGAGAACAGGCAT
GGGGACCTTCTCAATAAGTATCTCTATCTATCACTGGACGAGTCGACATG
GCCCAAATTGAGAGGACCATTCAGTATCTGATTACTTATGGAATGGTATT
TACTTAGGACCCCTAGCTAATTTATTAACTTAATCACTTAACGTCTTTTA
ATGTGTTTAATTAGTTTTCTTTGTGTATGCATATAAACGTATGTGCTTAG
GATCCCGGGGCTGAGAACAACCCTTACTTGGCCTTCATATACACTTCATT
CCTGGAAAGGGCTACCGCTATCTCTCATGGGAACACTGCCAAACTTGCCA
AGGAGCATGGGGACTTGAAGTTGGCGCAAATATGCGGTACAATAGCCTCC
GATGAGAAGCGCCRTGAGGCGGCCTACAMAAAGATAGTGGCAAAGCTGWT
TKWRCAGTCATTTCTTTAGCTCACRTGATGWAGAAGCAAATCACTATGCC
CGCTCACTTGATGTATGATGGTCGTGATCACCACCTTTTCCACCACTTTT
CCAGTGTTGCGCAGCGCCTTGGAKTATATACCACCAATGACTATGCCGAT
ATACTGGAGTTGTTGCTCTCCGTGTGGAAGGTTGAAACCCTAACCGGACT
TTCACCTGAGGGCCGAAAGGCTCAGGATTATGTTTGTGGGTTGGCCCYAA
GAATAAGAAAACTGGAGGAAAGAGTTCAATTAAGGGACAAGCGACCACTC
ACCTCCGTACCTATCAGTTGGATCTTTGGTGGACAAGTGAGGGTCATCTG
A
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Coding sequence (CDS) from alignment at MDC005579.302:2782..4282+

>MDP0000166468 ID=MDP0000166468; Name=MDP0000166468; organism=Malus x domestica; type=CDS; length=816bp; location=Sequence derived from: MDC005579.302:2782..4282+ (Malus x domestica
ATGACGAGCTGCCTAACACCTCCCAAGTGCGCCATGGCCTCATCCAGTGC
TAGTACTACTCTCGGCCCAGCAGCTTCCAAAGAAAGAGAGCTCAGGATTG
ATGAGATTAACAATAGAAATGGGAATTATGTACACAATTACAAGAAGGCT
TTCATGCCTCGGCGGGAGTTGCGTTATCAAGAAATCACACATTCTATGCC
AAGTCAAAAGATTGAGATATTCAAATACCTAGAGGACTGGGCTGAGCACA
ACATTTTGGTTCACTTGAAACCAGTTGACAAGTGTTGGCAACCTCAAGAT
TTTCTTCCTCACTCTCGAACTACTGGCGATACGGATGGATTTCTTGAGCA
AGTCAAGGAACTGAGGGAGAGGGCAAATGAGATTCCTGATGATTACTTTG
TTGTTTTGGTCGGAAACATGATCACTGAAGACGCCCTTCCGACTTACCAA
ACGATGCTTAATACATTGGATGGAGTTCAAGATGAAACAGGTTCAAGCCC
TATTTCTTGGGCAGTTTGGAACAGGGCATGGACTGCTGAAGAGAACAGGC
ATGGGGACCTTCTCAATAATGTTGCGCAGCGCCTTGGAKTATATACCACC
AATGACTATGCCGATATACTGGAGTTGTTGCTCTCCGTGTGGAAGGTTGA
AACCCTAACCGGACTTTCACCTGAGGGCCGAAAGGCTCAGGATTATGTTT
GTGGGTTGGCCCYAAGAATAAGAAAACTGGAGGAAAGAGTTCAATTAAGG
GACAAGCGACCACTCACCTCCGTACCTATCAGTTGGATCTTTGGTGGACA
AGTGAGGGTCATCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005067Fatty_acid_desaturase-2
IPR009078Ferritin-like_SF
IPR012348RNR-like
Vocabulary: Biological Process
TermDefinition
GO:0006631fatty acid metabolic process
GO:0055114obsolete oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0045300stearoyl-[ACP] desaturase activity
GO:0016491oxidoreductase activity
GO:0046914transition metal ion binding