MDP0000175563, MDP0000175563 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000175563
Unique Name	MDP0000175563
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	7274

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr2	chromosome	chr2:34901691..34908964 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC007830.657	contig	MDC007830.657:1926..9199 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000175563_exon_1	MDP0000175563_exon_1	Malus x domestica	CDS
MDP0000175563_exon_2	MDP0000175563_exon_2	Malus x domestica	CDS
MDP0000175563_exon_3	MDP0000175563_exon_3	Malus x domestica	CDS
MDP0000175563_exon_4	MDP0000175563_exon_4	Malus x domestica	CDS
MDP0000175563_exon_5	MDP0000175563_exon_5	Malus x domestica	CDS
MDP0000175563_exon_6	MDP0000175563_exon_6	Malus x domestica	CDS
MDP0000175563_exon_7	MDP0000175563_exon_7	Malus x domestica	CDS
MDP0000175563_exon_8	MDP0000175563_exon_8	Malus x domestica	CDS
MDP0000175563_exon_9	MDP0000175563_exon_9	Malus x domestica	CDS
MDP0000175563_exon_10	MDP0000175563_exon_10	Malus x domestica	CDS
MDP0000175563_exon_11	MDP0000175563_exon_11	Malus x domestica	CDS
MDP0000175563_exon_12	MDP0000175563_exon_12	Malus x domestica	CDS
MDP0000175563_exon_13	MDP0000175563_exon_13	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000175563	MDP0000175563	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 28..65 score: 1.5e-12coord: 69..107 score: 5.7
IPR001680	WD40 repeat	SMART	SM00320	WD40 repeats	coord: 26..65 score: 9.8e-12coord: 68..107 score: 3.3
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 33..74 score: 15.655coord: 75..109 score: 16
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 569..598 score: 0.058coord: 645..672 score: 0
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 672..721 score: 1.7e-08coord: 774..822 score: 3.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 847..874 score:
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	PPR: pentatricopeptide repeat domain	coord: 674..700 score: 7e-07coord: 777..810 score: 7.8
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 501..535 score: 6.401coord: 567..601 score: 8.539coord: 536..566 score: 6.533coord: 672..706 score: 10.896coord: 641..671 score: 6.248coord: 602..640 score: 5.185coord: 775..809 score: 12.638coord: 744..774 score: 6.982coord: 709..743 score: 6.073coord: 810..845 score: 8.133coord: 846..876 score: 7.717coord: 912..946 score: 6
IPR011990	Tetratricopeptide-like helical	GENE3D	1.25.40.10	no description	coord: 878..929 score: 8.5
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10	no description	coord: 7..123 score: 1.3
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 1..116 score: 29
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 6..123 score: 8.3
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 52..66 score: NAcoord: 94..108 score
IPR020472	G-protein beta WD-40 repeat	PRINTS	PR00320	GPROTEINBRPT	coord: 9..23 score: 1e-05coord: 52..66 score: 1e-05coord: 94..108 score: 1
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 475..
None	No IPR available	PANTHER	PTHR24015:SF126	SUBFAMILY NOT NAMED	coord: 475..
None	No IPR available	PFAM	PF14432	DYW_deaminase	coord: 972..1072 score: 3.5
None	No IPR available	SEG	seg	seg	coord: 166..177 score: NAcoord: 336..347 score: NAcoord: 410..424 score
None	No IPR available	SEG	seg	seg	coord: 19..30 score
None	No IPR available	SEG	seg	seg	coord: 5..22 score
None	No IPR available	SEG	seg	seg	coord: 7..26 score
None	No IPR available	SEG	seg	seg	coord: 39..49 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:34901691..34908964+
mRNA from alignment at MDC007830.657:1926..9199+
coding sequence from alignment at MDC007830.657:1926..9199+

mRNA sequence

>MDP0000175563 ID=MDP0000175563; Name=MDP0000175563; organism=Malus x domestica; type=mRNA; length=7274bp
ATGAAAGGYGATTCCCCTGAAAGATTGGTTTCTGGATCTGATGATTTCAC
AATGTTTTTATGGGAACCTTTTCTCAAGAAACAACCTAAAACTCGCATGA
CGGGTCACCAACAGGTAAAATAATTGAATGCTATGTCYGGTTGTTAATCT
TTATTTTTTATTTTATTTTTGCTTAAACCAAGTTTCTTATTATTGTTTAT
TTGGAGYGCAATACTACCTTAGTTTTRCAGTTTGTGTCTGTATCAGTGCT
TGTGATTATGACTTAAATGACAAGATCTTATTCCTCAGCTGACGTGGTAA
CAGCCATATATATAAATCTTAATAATGGAAGTATGAACATGTTTCTTGGT
AACAGCCTATAAAYCACGTCTGCTTTTCACCTGATGGGCAATGGATAGCA
AGTGCCTCATTTGATMGGTCTGTCAAGTTATGGAAYGGTACTACTGGAAA
ATTTGTTGCAGCTTTCCGGGGCCAYGTTGGCCCTGTCTACCAGATCAGGT
CTGAATTGATTTCAATGGTTTCTGTTTTTTGAATGGTTATGCTGTATGGC
TAATTATTACCTATTGCCTCACAGCTGGTCAGCAGACAGCAGGCTACTTG
TTAGTGGCAGCAAAGATTCCACTCTTAAGGTAAACCACTTACTGGTACTG
AACTTTCTTTTTKTGGTGATAAGGATTCTTGACAAAGGAGTGAGATTTWA
AGATTTCAYGTTGTGTTTGAAGCACATCRGGAAACATAATGTGGTGTAAG
TGGAGAAAGTAATTGACAGGCGATTTCTTCACATTTTGATAACTATTTAT
GTYACGRCGATAAGAGTCATCTCATATCTTASTAGTGGTATCRATATCAG
TTCATAWGTAAGCTGGATTTCGGTTTCCATTGAAATGACATCAAATTGAT
TTGAGTTTGTATATCAAACCTAATATTGTTTTCACACATCCGAGAAATAA
MGTGTTGTCTTTTAATTTCCATTAATGATTTTGCYAGTATAAGGCATATT
TCTTAGTTTTGACCTGATATTTTGTGGTTATGTACATGGGTATGGTCATG
GCATAAGCAATCATGGAAACCTSGATTTTTATTTTCAGCTTCCTGRTCAT
TGTCTATTTTCATCACGTATGAACTCTTCAAACTATTGAGCTACTAAATT
CAGATGCCTTACACTTGTTTTGTTATACTGTGYACCTTGGTTGGGGTGCT
ATGCTCTTGTTGYTACTAGTGGAAGTATCTTGGGGTTACATTYGTGACTT
ATGGATGAATTTATTTTAATCATGTAGGTTTGGGATATCAAAGCACGGGC
GCTAAAACTAGATCTTCCTGGCCATGCAGATGAGGTGTGTTTTCCCTTCA
CCTTAAAGACACAGATTTACTGTTTCATTTATTGAAGCATGCTTGGAGGA
GGATTCCATAGGACAGAGACCAATTGAAAACTGCAGGAAGACATCAACTA
AATCAATTGACCCTCACGTAAAGCAATGCATAAGGACTTGTCCACGTCTT
CTAATTCTACTCAAGTGCTTTTAGATATTGCATGATTTAAGCTACCCCAT
CCATATGCGAGAAGGCAGCACATGTAAACCAAGTTTTCTTCACCATCTTG
AGTCTTTACAAAAACAAGTTGGGCTACTTTGAGGGAACCCAAGTCCTCCG
GATTTCTATTGTCTGATGGCGCTTTATCTTCATTCTRCATGTTATATGAG
GAGTACATAGCAGTTAGCGCCACAAAAGAAGACAAACAAAATATGTCATA
TCTATACTGTAGACTCTTTACTGAATCGATAGACCKTCATTTTAGGCAAC
CTAGAACAATTTTTCAATTTTCCATTTTATGCATGCACCGGTAAGAAACT
TTAMACRCATGTCCTCTYTATATTGACATATGGTTTAACCCATTTTCGAA
TTTTCAACTTCTTTTTGAAAGGTTTTTGCTGTYGATTGGAGTCCAGATGG
TCAGAAGGTTGCTTCTGGTGGTAAAGATAGAGTTCTRAAGTTATGGATGG
GCTAGACCAACGGTAGGCCGAAGTGCGGGCAGCTRGATAATTGAAATACA
TGATGGTGGTAAATGAGCACTGAAGTATTTGGTACGGTATACATRAAGTA
TACTGTACAARTACAGTATACGAACAAGGRTTGGGAATCTAATAATCCGT
CACAAGAGAGGTTGAAAGGAAAAGCTCCTAAATSAGCATTAAAGTTTTTG
ATCCATTGGGGGGAAGCCAATTCATGAATCTGGGTGTAACTTTACGTTRT
GTTGGATGGAAACGAACCTTGAACTAAAATTTTGTTTGTTATTGTCGGAA
ATGTATGRTYCAATKTATGAATATCACATTTCGTAGCTCTGAACAATACG
ATTCATGATTGTCATTCTGGATTTGATGGGTTGAAACATACTGATTTGGG
GCTGTTGAGCAAGTTGATGAACCATGAAGTTGGTTTTACTAWAGACCCAA
TTGTTATTTTKTAGTTCGAACAAATGGACATCATTGTTATATGTGGAACT
CACTTACATGAGAGAGTATGTCAACGTATTTTTTTTTGAATAAGAGATTA
RSAACTCGTATGTTAACATATTAATGAGTTTTTTATACRGTGCCYARAGT
GTGYGRTACTCMAAATGTTTAAACTGTWATATTAACGTAAAATTTTGGAG
TTTAATTAGCATTACTCAAAGTAGTCAAATGTTATCAACAAGCAATTTAG
TTTGATTTTACCAAAAAAAAAWATTGGAAGAGGAAAATCCCAATCCTATC
AAAGAAAGAGAAAGGTCCCCCAACTCCCAAACAAAACAAAAGCCAAGGTT
TTGATTWAAAAAAAAATAAAAAAATAAAAAAAATGCCAAAGGGGTTTTAA
ACCTAATCCGAATTCCAAGGGTTTTAGAAACTGCCAACGGTATCTTCTTC
GTTACCCTAAAACCCTAGCCATTTGAATGTAGTCTCTGAAATCCCCAATT
CCAMTTCCAATTCAAATGCTTCTTCTTCTTCACCAGTAAAGRGGAAAGGG
AAAAGGGTCATGGCTGCACTGGCTCACGCCCTGCTCAGCGTTCCATCCCG
TTGTGGTCTTTGCCGCGCCGTTAATCCCAAGGACAATTACAAGCTCTGCG
TTTGGGGGTTTTCCAGAKCAATWGCTCGCTATGGAATCTCCATTTCTAGT
GTTTCCACGAGGAAGAARGATGGTGGTAATCTTCACCGGCCCTTGGGCAC
TGAATGCAGCTGACGCCCTCATCGTCGTCCACAATGCTACAGCTCGCACC
ACTGTCGAAATCCCCGTTACCTGTTATCAGGTCACTGCTTCATTCCACTG
ATAAATTTATTATCTTTAATCTTTCTCTGTTTAGTGATAATTTGGTGAAT
TGGGTACTGATTTAGCTGTAATTTGTGGACTTTCTGTTGTTCAATCCTAA
GTTTTACATGTAACACGTGTGACGAAAAGCGTGCTTGTACTTTTGTTTAT
GCTCTAGTATGAACTGTGTTTTGAATTTCAACCTGTCCATATAGGCYACT
GTCATATATTTGTTCATCTGCCAGAAAGTTAATATATGCAAAAAGGGATA
CATGTTAGTTACCAGATGTTATGTTTGTGATTGTACAKTCTAATAGGCAA
ATGAACGGCGTTAGCTAAAATAATGAGCTTTGATTTTCTTTTTCTTTTTT
TCAATCGTGTCATTGGATTTACAGATTGGATGTCTATTATTRTGCTGCCA
ATGATGAAATTATTTAGAGTTTTGAGATTCAGTATGCTCCTGTTATTTCA
CTTCTCTACCCGTTTTGTAAATGAATGTTTTGTCTGGCTGCACTTCTAAC
TCTGTTCATTCTTTTCCTCCCATTTCCCATATTGGTTCCGTATCTATAGT
TTTCTATGCARAAGAAAGAGAGCTTGAACAGTTAAAAATGCTCTGTCTTT
CTAATAGTAGTTGTCAGAGTTCGTATACTATATGAAATTTGTGTATTGTT
TAMCTTTGTGAAGATGATTGAGAAATRCATTCCTTGCGCTAGCATATCCA
TATTTTCTGAAATTTCTTATCACTCTGCATTTAGCTTAATCCCAAATCAA
CTTGCAGCTTATTGGTGTTCCTGAACAAGCTGAAAAAGATGTGGTTGTTG
AAGCAGTAATTGATTTGAAGAGTGCTAAAATTGATGAAGGTTACACCATG
CATGCTATTAAATCTCGCAAGGTAGGGAGTAGGGAGTAGGGACTTGACAA
TGTTAATGTGTTKTTCGTCCAATCTTAAGAATTCATTTTTATTCCTTATA
GCATGTGATAAAAGCCTTCTTCTTAGTTGTCTTTTTGGTTCCTTTACAGG
ACCTTCTAATGAACGTGAGAGAGAAGCTTATCTTTGAACCAGAATATGCT
GGTAGTAAAAAGGAAAATATCCCGCCTAAATCCTCTCTTCATATCCCTTG
GGCATGGCTGCCAGCTGCTCTTTGCCTCCTTCAAGAGGTTTGGCTTTTTT
TTATACAATATACTTGGTTTAGTGTAGGCTTAGCTTTCACTTTTCAGCTT
TCAGCTCTTTTTATTTTCTTTTTAATATATTGTTAAACTCTCATTTTTTT
TTCTTTCTGATATTTATCATTATACTGGCACCCTGGTTTTTGTGTATGGC
CCATCATTTGTTACAATTATCAAGTTTGATATTCTCCCCCTTCCCCTACC
TAAATCAAAAAGGTTTTGAAAGATGGATACTATTGGATTTCTGTAATCCA
GGTTGGGGAAGTAAAGCTTGTGCAAGATATTGGTCAGGCAGCTGTTCAAC
ATCCAGATGCTAAGCCGTATACTCACGATCTTCTTCTTTCTATGGCACTA
GCTGAGGTAAGGAAGGTCAGAAAATAGGTTAATATCTTGTACCATSTGTT
TTGTTGTATGTCCTTTGCTTACCTTAAGTGTTTTATTGAAGTGTGCAACT
GCAAAGATTGGTTTTGAGAAGACCAAGGTGTCCCAAGGATTTGAAGCTCT
TGCTCGTGCTCAGTGTCTTCTAAGGAGTAAAAAATCTCTTGAGAAAATAT
CATTGTTATCTCAGGTAATGCTCACATCTTCTATAAGGCATTTCTCTGTT
CAGTCTAATTTATCCAACTAATAAATTTCCCTAAAAGGAATAAAAGAGAG
TATTTGCATGTTCTGTTCGGTCAACATCATCACTGGTAATACTGTTGTGT
AGATCGACAAAGCTAAAGCTATATGTGAGTGTCTGATTGCATCAAAAGGT
TCTGATCTGAAACTTGAGGAAGCTTTTTCTCTGTTCCTTCTTGGTCAGGT
TTGTGCTTCTTTTTCCCCCAAAAATTTTTTTTTAATTTCTGGTATCATGC
ATAAGCTGTGAATTTTGGTTTCCTATTCAATGTGTTTTTTTTAAGTTCCC
TCTCGTGTTTTCTCAATTCAATACTTGATAATATATTGGTTGCCAGGGTA
GTGAGGCTGCAATTGTTGAGAAGCTTCAGAAGCTTGAAGTGGACAAAAAT
AAGTTAATACAATCTCTATGTAAACAAGGCAACCTCAAACAAGCCCTGCA
GTTCCTTCCACACGAGCCTAACCCCTCCCAACAGACCTATGAGCTCTTAC
TACTCTCTTGCACTCACCATAAGTCTCTCTCTGATGGGCTTGACGTGCAT
CGTCACATTGTTGATGGTGGGTGGGACCAAGACCCTTTCCTGGCCACCAA
ACTCATAGAGATGTACTCAGCATTGGACTCTATTGATAATGCACGTGAAG
TGTTTGATAAAACTCGTAAAAGAACTATTTATATGTGGAATGCACTCTTC
AGAGCTCTTACATTGGCAGGTCATGGAACTGAGGTGCTAGATTTGTATCG
ACAAATGAATACAGTTGGGATTTCGTCAGATCGGTTTACATATACATATG
TACTCAAAGCTTGTGTTGTTTCTGAGTGTTTGAGTTCACTCCTACAGAAG
GGGAAGGAGATTCATGGACATATTTTGAAGAACGGATATGGGGCACATGT
TCATGTTATGACCACTTTGTTGGATATGTATGCGAGGTTTGGGTGTGTTT
TTTATGCTAGTAGTGTATTTGATCAGATGCAGATTAGAAATGTGGTTTCA
TGGAGTGCTATGATTGCATGCTATGCAAAGAATGGGAGGCCTTATGAAGC
CTTGGAACTGTTTCGGGAAATGATACTTGATGCCCAAGATTTGTTTCCCA
ATCCTGTCACAATGGTTAGTGTGCTTCAAGCTTGTGCAGCTCTTACTGCT
TTGGAGCAGGGGAGGTTCATTCATGGATATATCCTCAGAAGGGGTCTTRA
TTCAATCCTTCCAGTTATGAGTGCTCTTATCACAATGTATGCGAGATGCG
GTAAGCTTGACTTGGGGGAACGAGTTTTCAGTTTGATGAATAAGAAGGAT
GTTGTTTCATGGAATTCCTTGATTTCTAGTTATGGCATTCATGGAAACGG
AAAAAAGGCAATTCAAATTTTTGAAGACATGATCAATCATGGAGTTTCAC
CAAGTCGCATTTCATTCGTTAGTGTCTTGGGGGCTTGTAGTCACGCAGGT
CTTGTTGAAGAGGGGAAGATATTATTTAATTCTATGGTTAAGGAACATGG
ATTATATCCCAGTGTTGAGCACTATGCTTGTATGGTGGATCTTCTCGGTC
GTGCCAATCGGTTAGATGAAGCAGCTAAAGTAATAGATAATATGCGGATT
GAGCCAGGAGCTAAAGTTTGGGGTGCTCTTCTTGGATCATGTAGAATACA
TTGTAACGTTGAGCTGGCAGAGAGAGCAAGCAGAAGGCTATTTGAGCTTG
AGCCTAGGAATGCTGGGAACTATGTACTTCTAGCTGATATTTATGCTGAA
GCCAAGTTGTGGGACGATGTAAAAAGAGTGAAGAAGCATTTAGAAGCTCG
AGAACTCCAAAAGATCCCAGGTCGGAGTTGGATTGAAGTTAAAAGGAAGA
TATATTCATTCATTTCCGTTGATGAGTTTAACCCACAGATGGAGCAGCTC
CATGCATTGTTGGCTGAATTGTCAGCAGAGATGAAGGATCAAGGATATAA
GCCGCARACCAAAGTTGTCCTCTATGATCTCGATGAGGAAGAGAAGGAAC
GAATAGTGTTAGGCCATAGTGAAAAGTTAGCRGTTGCATTTGGACTCATA
AATACCAAAAGAGGGGAAACTATTAGGATTTCCAAGAACTTAAGGTTATG
TGAAGATTGTCACTCTGTTACGAAGTTCATTTCCAAATTCGCCAATAGAG
AGATTCTGGTTCGAGATGTGAATCGGTTTCACCATTTYCGTGACGGGGTT
TGTTCATGTGGAGATTATTGGTAG

protein sequence of MDP0000175563

>MDP0000175563 ID=MDP0000175563; Name=MDP0000175563; organism=Malus x domestica; type=polypeptide; length=1082bp
MKGDSPERLVSGSDDFTMFLWEPFLKKQPKTRMTGHQQPINHVCFSPDGQ
WIASASFDXSVKLWNGTTGKFVAAFRGHVGPVYQISWSADSRLLVSGSKD
STLKVWDIKARALKLDLPGHADEMVRRLLLVVKIEFXSYGWARPTVGRSA
GSXIIEIHDGVSEIPNSXSNSNASSSSPVKXKGKRVMAALAHALLSVPSR
CGLCRAVNPKDNYKLCVWGFSRXXARYGISISSVSTRKKDGADALIVVHN
ATARTTVEIPVTCYQLIGVPEQAEKDVVVEAVIDLKSAKIDEGYTMHAIK
SRKDLLMNVREKLIFEPEYAGSKKENIPPKSSLHIPWAWLPAALCLLQEV
GEVKLVQDIGQAAVQHPDAKPYTHDLLLSMALAECATAKIGFEKTKVSQG
FEALARAQCLLRSKKSLEKISLLSQIDKAKAICECLIASKGSDLKLEEAF
SLFLLGQGSEAAIVEKLQKLEVDKNKLIQSLCKQGNLKQALQFLPHEPNP
SQQTYELLLLSCTHHKSLSDGLDVHRHIVDGGWDQDPFLATKLIEMYSAL
DSIDNAREVFDKTRKRTIYMWNALFRALTLAGHGTEVLDLYRQMNTVGIS
SDRFTYTYVLKACVVSECLSSLLQKGKEIHGHILKNGYGAHVHVMTTLLD
MYARFGCVFYASSVFDQMQIRNVVSWSAMIACYAKNGRPYEALELFREMI
LDAQDLFPNPVTMVSVLQACAALTALEQGRFIHGYILRRGLXSILPVMSA
LITMYARCGKLDLGERVFSLMNKKDVVSWNSLISSYGIHGNGKKAIQIFE
DMINHGVSPSRISFVSVLGACSHAGLVEEGKILFNSMVKEHGLYPSVEHY
ACMVDLLGRANRLDEAAKVIDNMRIEPGAKVWGALLGSCRIHCNVELAER
ASRRLFELEPRNAGNYVLLADIYAEAKLWDDVKRVKKHLEARELQKIPGR
SWIEVKRKIYSFISVDEFNPQMEQLHALLAELSAEMKDQGYKPQTKVVLY
DLDEEEKERIVLGHSEKLAVAFGLINTKRGETIRISKNLRLCEDCHSVTK
FISKFANREILVRDVNRFHHFRDGVCSCGDYW

mRNA from alignment at chr2:34901691..34908964+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000175563 ID=MDP0000175563; Name=MDP0000175563; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr2:34901691..34908964+ (Malus x domestica

mRNA from alignment at MDC007830.657:1926..9199+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000175563 ID=MDP0000175563; Name=MDP0000175563; organism=Malus x domestica; type=mRNA; length=7274bp; location=Sequence derived from: MDC007830.657:1926..9199+ (Malus x domestica
ATGAAAGGYGATTCCCCTGAAAGATTGGTTTCTGGATCTGATGATTTCAC
AATGTTTTTATGGGAACCTTTTCTCAAGAAACAACCTAAAACTCGCATGA
CGGGTCACCAACAGGTAAAATAATTGAATGCTATGTCYGGTTGTTAATCT
TTATTTTTTATTTTATTTTTGCTTAAACCAAGTTTCTTATTATTGTTTAT
TTGGAGYGCAATACTACCTTAGTTTTRCAGTTTGTGTCTGTATCAGTGCT
TGTGATTATGACTTAAATGACAAGATCTTATTCCTCAGCTGACGTGGTAA
CAGCCATATATATAAATCTTAATAATGGAAGTATGAACATGTTTCTTGGT
AACAGCCTATAAAYCACGTCTGCTTTTCACCTGATGGGCAATGGATAGCA
AGTGCCTCATTTGATMGGTCTGTCAAGTTATGGAAYGGTACTACTGGAAA
ATTTGTTGCAGCTTTCCGGGGCCAYGTTGGCCCTGTCTACCAGATCAGGT
CTGAATTGATTTCAATGGTTTCTGTTTTTTGAATGGTTATGCTGTATGGC
TAATTATTACCTATTGCCTCACAGCTGGTCAGCAGACAGCAGGCTACTTG
TTAGTGGCAGCAAAGATTCCACTCTTAAGGTAAACCACTTACTGGTACTG
AACTTTCTTTTTKTGGTGATAAGGATTCTTGACAAAGGAGTGAGATTTWA
AGATTTCAYGTTGTGTTTGAAGCACATCRGGAAACATAATGTGGTGTAAG
TGGAGAAAGTAATTGACAGGCGATTTCTTCACATTTTGATAACTATTTAT
GTYACGRCGATAAGAGTCATCTCATATCTTASTAGTGGTATCRATATCAG
TTCATAWGTAAGCTGGATTTCGGTTTCCATTGAAATGACATCAAATTGAT
TTGAGTTTGTATATCAAACCTAATATTGTTTTCACACATCCGAGAAATAA
MGTGTTGTCTTTTAATTTCCATTAATGATTTTGCYAGTATAAGGCATATT
TCTTAGTTTTGACCTGATATTTTGTGGTTATGTACATGGGTATGGTCATG
GCATAAGCAATCATGGAAACCTSGATTTTTATTTTCAGCTTCCTGRTCAT
TGTCTATTTTCATCACGTATGAACTCTTCAAACTATTGAGCTACTAAATT
CAGATGCCTTACACTTGTTTTGTTATACTGTGYACCTTGGTTGGGGTGCT
ATGCTCTTGTTGYTACTAGTGGAAGTATCTTGGGGTTACATTYGTGACTT
ATGGATGAATTTATTTTAATCATGTAGGTTTGGGATATCAAAGCACGGGC
GCTAAAACTAGATCTTCCTGGCCATGCAGATGAGGTGTGTTTTCCCTTCA
CCTTAAAGACACAGATTTACTGTTTCATTTATTGAAGCATGCTTGGAGGA
GGATTCCATAGGACAGAGACCAATTGAAAACTGCAGGAAGACATCAACTA
AATCAATTGACCCTCACGTAAAGCAATGCATAAGGACTTGTCCACGTCTT
CTAATTCTACTCAAGTGCTTTTAGATATTGCATGATTTAAGCTACCCCAT
CCATATGCGAGAAGGCAGCACATGTAAACCAAGTTTTCTTCACCATCTTG
AGTCTTTACAAAAACAAGTTGGGCTACTTTGAGGGAACCCAAGTCCTCCG
GATTTCTATTGTCTGATGGCGCTTTATCTTCATTCTRCATGTTATATGAG
GAGTACATAGCAGTTAGCGCCACAAAAGAAGACAAACAAAATATGTCATA
TCTATACTGTAGACTCTTTACTGAATCGATAGACCKTCATTTTAGGCAAC
CTAGAACAATTTTTCAATTTTCCATTTTATGCATGCACCGGTAAGAAACT
TTAMACRCATGTCCTCTYTATATTGACATATGGTTTAACCCATTTTCGAA
TTTTCAACTTCTTTTTGAAAGGTTTTTGCTGTYGATTGGAGTCCAGATGG
TCAGAAGGTTGCTTCTGGTGGTAAAGATAGAGTTCTRAAGTTATGGATGG
GCTAGACCAACGGTAGGCCGAAGTGCGGGCAGCTRGATAATTGAAATACA
TGATGGTGGTAAATGAGCACTGAAGTATTTGGTACGGTATACATRAAGTA
TACTGTACAARTACAGTATACGAACAAGGRTTGGGAATCTAATAATCCGT
CACAAGAGAGGTTGAAAGGAAAAGCTCCTAAATSAGCATTAAAGTTTTTG
ATCCATTGGGGGGAAGCCAATTCATGAATCTGGGTGTAACTTTACGTTRT
GTTGGATGGAAACGAACCTTGAACTAAAATTTTGTTTGTTATTGTCGGAA
ATGTATGRTYCAATKTATGAATATCACATTTCGTAGCTCTGAACAATACG
ATTCATGATTGTCATTCTGGATTTGATGGGTTGAAACATACTGATTTGGG
GCTGTTGAGCAAGTTGATGAACCATGAAGTTGGTTTTACTAWAGACCCAA
TTGTTATTTTKTAGTTCGAACAAATGGACATCATTGTTATATGTGGAACT
CACTTACATGAGAGAGTATGTCAACGTATTTTTTTTTGAATAAGAGATTA
RSAACTCGTATGTTAACATATTAATGAGTTTTTTATACRGTGCCYARAGT
GTGYGRTACTCMAAATGTTTAAACTGTWATATTAACGTAAAATTTTGGAG
TTTAATTAGCATTACTCAAAGTAGTCAAATGTTATCAACAAGCAATTTAG
TTTGATTTTACCAAAAAAAAAWATTGGAAGAGGAAAATCCCAATCCTATC
AAAGAAAGAGAAAGGTCCCCCAACTCCCAAACAAAACAAAAGCCAAGGTT
TTGATTWAAAAAAAAATAAAAAAATAAAAAAAATGCCAAAGGGGTTTTAA
ACCTAATCCGAATTCCAAGGGTTTTAGAAACTGCCAACGGTATCTTCTTC
GTTACCCTAAAACCCTAGCCATTTGAATGTAGTCTCTGAAATCCCCAATT
CCAMTTCCAATTCAAATGCTTCTTCTTCTTCACCAGTAAAGRGGAAAGGG
AAAAGGGTCATGGCTGCACTGGCTCACGCCCTGCTCAGCGTTCCATCCCG
TTGTGGTCTTTGCCGCGCCGTTAATCCCAAGGACAATTACAAGCTCTGCG
TTTGGGGGTTTTCCAGAKCAATWGCTCGCTATGGAATCTCCATTTCTAGT
GTTTCCACGAGGAAGAARGATGGTGGTAATCTTCACCGGCCCTTGGGCAC
TGAATGCAGCTGACGCCCTCATCGTCGTCCACAATGCTACAGCTCGCACC
ACTGTCGAAATCCCCGTTACCTGTTATCAGGTCACTGCTTCATTCCACTG
ATAAATTTATTATCTTTAATCTTTCTCTGTTTAGTGATAATTTGGTGAAT
TGGGTACTGATTTAGCTGTAATTTGTGGACTTTCTGTTGTTCAATCCTAA
GTTTTACATGTAACACGTGTGACGAAAAGCGTGCTTGTACTTTTGTTTAT
GCTCTAGTATGAACTGTGTTTTGAATTTCAACCTGTCCATATAGGCYACT
GTCATATATTTGTTCATCTGCCAGAAAGTTAATATATGCAAAAAGGGATA
CATGTTAGTTACCAGATGTTATGTTTGTGATTGTACAKTCTAATAGGCAA
ATGAACGGCGTTAGCTAAAATAATGAGCTTTGATTTTCTTTTTCTTTTTT
TCAATCGTGTCATTGGATTTACAGATTGGATGTCTATTATTRTGCTGCCA
ATGATGAAATTATTTAGAGTTTTGAGATTCAGTATGCTCCTGTTATTTCA
CTTCTCTACCCGTTTTGTAAATGAATGTTTTGTCTGGCTGCACTTCTAAC
TCTGTTCATTCTTTTCCTCCCATTTCCCATATTGGTTCCGTATCTATAGT
TTTCTATGCARAAGAAAGAGAGCTTGAACAGTTAAAAATGCTCTGTCTTT
CTAATAGTAGTTGTCAGAGTTCGTATACTATATGAAATTTGTGTATTGTT
TAMCTTTGTGAAGATGATTGAGAAATRCATTCCTTGCGCTAGCATATCCA
TATTTTCTGAAATTTCTTATCACTCTGCATTTAGCTTAATCCCAAATCAA
CTTGCAGCTTATTGGTGTTCCTGAACAAGCTGAAAAAGATGTGGTTGTTG
AAGCAGTAATTGATTTGAAGAGTGCTAAAATTGATGAAGGTTACACCATG
CATGCTATTAAATCTCGCAAGGTAGGGAGTAGGGAGTAGGGACTTGACAA
TGTTAATGTGTTKTTCGTCCAATCTTAAGAATTCATTTTTATTCCTTATA
GCATGTGATAAAAGCCTTCTTCTTAGTTGTCTTTTTGGTTCCTTTACAGG
ACCTTCTAATGAACGTGAGAGAGAAGCTTATCTTTGAACCAGAATATGCT
GGTAGTAAAAAGGAAAATATCCCGCCTAAATCCTCTCTTCATATCCCTTG
GGCATGGCTGCCAGCTGCTCTTTGCCTCCTTCAAGAGGTTTGGCTTTTTT
TTATACAATATACTTGGTTTAGTGTAGGCTTAGCTTTCACTTTTCAGCTT
TCAGCTCTTTTTATTTTCTTTTTAATATATTGTTAAACTCTCATTTTTTT
TTCTTTCTGATATTTATCATTATACTGGCACCCTGGTTTTTGTGTATGGC
CCATCATTTGTTACAATTATCAAGTTTGATATTCTCCCCCTTCCCCTACC
TAAATCAAAAAGGTTTTGAAAGATGGATACTATTGGATTTCTGTAATCCA
GGTTGGGGAAGTAAAGCTTGTGCAAGATATTGGTCAGGCAGCTGTTCAAC
ATCCAGATGCTAAGCCGTATACTCACGATCTTCTTCTTTCTATGGCACTA
GCTGAGGTAAGGAAGGTCAGAAAATAGGTTAATATCTTGTACCATSTGTT
TTGTTGTATGTCCTTTGCTTACCTTAAGTGTTTTATTGAAGTGTGCAACT
GCAAAGATTGGTTTTGAGAAGACCAAGGTGTCCCAAGGATTTGAAGCTCT
TGCTCGTGCTCAGTGTCTTCTAAGGAGTAAAAAATCTCTTGAGAAAATAT
CATTGTTATCTCAGGTAATGCTCACATCTTCTATAAGGCATTTCTCTGTT
CAGTCTAATTTATCCAACTAATAAATTTCCCTAAAAGGAATAAAAGAGAG
TATTTGCATGTTCTGTTCGGTCAACATCATCACTGGTAATACTGTTGTGT
AGATCGACAAAGCTAAAGCTATATGTGAGTGTCTGATTGCATCAAAAGGT
TCTGATCTGAAACTTGAGGAAGCTTTTTCTCTGTTCCTTCTTGGTCAGGT
TTGTGCTTCTTTTTCCCCCAAAAATTTTTTTTTAATTTCTGGTATCATGC
ATAAGCTGTGAATTTTGGTTTCCTATTCAATGTGTTTTTTTTAAGTTCCC
TCTCGTGTTTTCTCAATTCAATACTTGATAATATATTGGTTGCCAGGGTA
GTGAGGCTGCAATTGTTGAGAAGCTTCAGAAGCTTGAAGTGGACAAAAAT
AAGTTAATACAATCTCTATGTAAACAAGGCAACCTCAAACAAGCCCTGCA
GTTCCTTCCACACGAGCCTAACCCCTCCCAACAGACCTATGAGCTCTTAC
TACTCTCTTGCACTCACCATAAGTCTCTCTCTGATGGGCTTGACGTGCAT
CGTCACATTGTTGATGGTGGGTGGGACCAAGACCCTTTCCTGGCCACCAA
ACTCATAGAGATGTACTCAGCATTGGACTCTATTGATAATGCACGTGAAG
TGTTTGATAAAACTCGTAAAAGAACTATTTATATGTGGAATGCACTCTTC
AGAGCTCTTACATTGGCAGGTCATGGAACTGAGGTGCTAGATTTGTATCG
ACAAATGAATACAGTTGGGATTTCGTCAGATCGGTTTACATATACATATG
TACTCAAAGCTTGTGTTGTTTCTGAGTGTTTGAGTTCACTCCTACAGAAG
GGGAAGGAGATTCATGGACATATTTTGAAGAACGGATATGGGGCACATGT
TCATGTTATGACCACTTTGTTGGATATGTATGCGAGGTTTGGGTGTGTTT
TTTATGCTAGTAGTGTATTTGATCAGATGCAGATTAGAAATGTGGTTTCA
TGGAGTGCTATGATTGCATGCTATGCAAAGAATGGGAGGCCTTATGAAGC
CTTGGAACTGTTTCGGGAAATGATACTTGATGCCCAAGATTTGTTTCCCA
ATCCTGTCACAATGGTTAGTGTGCTTCAAGCTTGTGCAGCTCTTACTGCT
TTGGAGCAGGGGAGGTTCATTCATGGATATATCCTCAGAAGGGGTCTTRA
TTCAATCCTTCCAGTTATGAGTGCTCTTATCACAATGTATGCGAGATGCG
GTAAGCTTGACTTGGGGGAACGAGTTTTCAGTTTGATGAATAAGAAGGAT
GTTGTTTCATGGAATTCCTTGATTTCTAGTTATGGCATTCATGGAAACGG
AAAAAAGGCAATTCAAATTTTTGAAGACATGATCAATCATGGAGTTTCAC
CAAGTCGCATTTCATTCGTTAGTGTCTTGGGGGCTTGTAGTCACGCAGGT
CTTGTTGAAGAGGGGAAGATATTATTTAATTCTATGGTTAAGGAACATGG
ATTATATCCCAGTGTTGAGCACTATGCTTGTATGGTGGATCTTCTCGGTC
GTGCCAATCGGTTAGATGAAGCAGCTAAAGTAATAGATAATATGCGGATT
GAGCCAGGAGCTAAAGTTTGGGGTGCTCTTCTTGGATCATGTAGAATACA
TTGTAACGTTGAGCTGGCAGAGAGAGCAAGCAGAAGGCTATTTGAGCTTG
AGCCTAGGAATGCTGGGAACTATGTACTTCTAGCTGATATTTATGCTGAA
GCCAAGTTGTGGGACGATGTAAAAAGAGTGAAGAAGCATTTAGAAGCTCG
AGAACTCCAAAAGATCCCAGGTCGGAGTTGGATTGAAGTTAAAAGGAAGA
TATATTCATTCATTTCCGTTGATGAGTTTAACCCACAGATGGAGCAGCTC
CATGCATTGTTGGCTGAATTGTCAGCAGAGATGAAGGATCAAGGATATAA
GCCGCARACCAAAGTTGTCCTCTATGATCTCGATGAGGAAGAGAAGGAAC
GAATAGTGTTAGGCCATAGTGAAAAGTTAGCRGTTGCATTTGGACTCATA
AATACCAAAAGAGGGGAAACTATTAGGATTTCCAAGAACTTAAGGTTATG
TGAAGATTGTCACTCTGTTACGAAGTTCATTTCCAAATTCGCCAATAGAG
AGATTCTGGTTCGAGATGTGAATCGGTTTCACCATTTYCGTGACGGGGTT
TGTTCATGTGGAGATTATTGGTAG

Coding sequence (CDS) from alignment at MDC007830.657:1926..9199+

>MDP0000175563 ID=MDP0000175563; Name=MDP0000175563; organism=Malus x domestica; type=CDS; length=3249bp; location=Sequence derived from: MDC007830.657:1926..9199+ (Malus x domestica
ATGAAAGGYGATTCCCCTGAAAGATTGGTTTCTGGATCTGATGATTTCAC
AATGTTTTTATGGGAACCTTTTCTCAAGAAACAACCTAAAACTCGCATGA
CGGGTCACCAACAGCCTATAAAYCACGTCTGCTTTTCACCTGATGGGCAA
TGGATAGCAAGTGCCTCATTTGATMGGTCTGTCAAGTTATGGAAYGGTAC
TACTGGAAAATTTGTTGCAGCTTTCCGGGGCCAYGTTGGCCCTGTCTACC
AGATCAGCTGGTCAGCAGACAGCAGGCTACTTGTTAGTGGCAGCAAAGAT
TCCACTCTTAAGGTTTGGGATATCAAAGCACGGGCGCTAAAACTAGATCT
TCCTGGCCATGCAGATGAGATGGTCAGAAGGTTGCTTCTGGTGGTAAAGA
TAGAGTTCTRAAGTTATGGATGGGCTAGACCAACGGTAGGCCGAAGTGCG
GGCAGCTRGATAATTGAAATACATGATGGTGTCTCTGAAATCCCCAATTC
CAMTTCCAATTCAAATGCTTCTTCTTCTTCACCAGTAAAGRGGAAAGGGA
AAAGGGTCATGGCTGCACTGGCTCACGCCCTGCTCAGCGTTCCATCCCGT
TGTGGTCTTTGCCGCGCCGTTAATCCCAAGGACAATTACAAGCTCTGCGT
TTGGGGGTTTTCCAGAKCAATWGCTCGCTATGGAATCTCCATTTCTAGTG
TTTCCACGAGGAAGAARGATGGTGCTGACGCCCTCATCGTCGTCCACAAT
GCTACAGCTCGCACCACTGTCGAAATCCCCGTTACCTGTTATCAGCTTAT
TGGTGTTCCTGAACAAGCTGAAAAAGATGTGGTTGTTGAAGCAGTAATTG
ATTTGAAGAGTGCTAAAATTGATGAAGGTTACACCATGCATGCTATTAAA
TCTCGCAAGGACCTTCTAATGAACGTGAGAGAGAAGCTTATCTTTGAACC
AGAATATGCTGGTAGTAAAAAGGAAAATATCCCGCCTAAATCCTCTCTTC
ATATCCCTTGGGCATGGCTGCCAGCTGCTCTTTGCCTCCTTCAAGAGGTT
GGGGAAGTAAAGCTTGTGCAAGATATTGGTCAGGCAGCTGTTCAACATCC
AGATGCTAAGCCGTATACTCACGATCTTCTTCTTTCTATGGCACTAGCTG
AGTGTGCAACTGCAAAGATTGGTTTTGAGAAGACCAAGGTGTCCCAAGGA
TTTGAAGCTCTTGCTCGTGCTCAGTGTCTTCTAAGGAGTAAAAAATCTCT
TGAGAAAATATCATTGTTATCTCAGATCGACAAAGCTAAAGCTATATGTG
AGTGTCTGATTGCATCAAAAGGTTCTGATCTGAAACTTGAGGAAGCTTTT
TCTCTGTTCCTTCTTGGTCAGGGTAGTGAGGCTGCAATTGTTGAGAAGCT
TCAGAAGCTTGAAGTGGACAAAAATAAGTTAATACAATCTCTATGTAAAC
AAGGCAACCTCAAACAAGCCCTGCAGTTCCTTCCACACGAGCCTAACCCC
TCCCAACAGACCTATGAGCTCTTACTACTCTCTTGCACTCACCATAAGTC
TCTCTCTGATGGGCTTGACGTGCATCGTCACATTGTTGATGGTGGGTGGG
ACCAAGACCCTTTCCTGGCCACCAAACTCATAGAGATGTACTCAGCATTG
GACTCTATTGATAATGCACGTGAAGTGTTTGATAAAACTCGTAAAAGAAC
TATTTATATGTGGAATGCACTCTTCAGAGCTCTTACATTGGCAGGTCATG
GAACTGAGGTGCTAGATTTGTATCGACAAATGAATACAGTTGGGATTTCG
TCAGATCGGTTTACATATACATATGTACTCAAAGCTTGTGTTGTTTCTGA
GTGTTTGAGTTCACTCCTACAGAAGGGGAAGGAGATTCATGGACATATTT
TGAAGAACGGATATGGGGCACATGTTCATGTTATGACCACTTTGTTGGAT
ATGTATGCGAGGTTTGGGTGTGTTTTTTATGCTAGTAGTGTATTTGATCA
GATGCAGATTAGAAATGTGGTTTCATGGAGTGCTATGATTGCATGCTATG
CAAAGAATGGGAGGCCTTATGAAGCCTTGGAACTGTTTCGGGAAATGATA
CTTGATGCCCAAGATTTGTTTCCCAATCCTGTCACAATGGTTAGTGTGCT
TCAAGCTTGTGCAGCTCTTACTGCTTTGGAGCAGGGGAGGTTCATTCATG
GATATATCCTCAGAAGGGGTCTTRATTCAATCCTTCCAGTTATGAGTGCT
CTTATCACAATGTATGCGAGATGCGGTAAGCTTGACTTGGGGGAACGAGT
TTTCAGTTTGATGAATAAGAAGGATGTTGTTTCATGGAATTCCTTGATTT
CTAGTTATGGCATTCATGGAAACGGAAAAAAGGCAATTCAAATTTTTGAA
GACATGATCAATCATGGAGTTTCACCAAGTCGCATTTCATTCGTTAGTGT
CTTGGGGGCTTGTAGTCACGCAGGTCTTGTTGAAGAGGGGAAGATATTAT
TTAATTCTATGGTTAAGGAACATGGATTATATCCCAGTGTTGAGCACTAT
GCTTGTATGGTGGATCTTCTCGGTCGTGCCAATCGGTTAGATGAAGCAGC
TAAAGTAATAGATAATATGCGGATTGAGCCAGGAGCTAAAGTTTGGGGTG
CTCTTCTTGGATCATGTAGAATACATTGTAACGTTGAGCTGGCAGAGAGA
GCAAGCAGAAGGCTATTTGAGCTTGAGCCTAGGAATGCTGGGAACTATGT
ACTTCTAGCTGATATTTATGCTGAAGCCAAGTTGTGGGACGATGTAAAAA
GAGTGAAGAAGCATTTAGAAGCTCGAGAACTCCAAAAGATCCCAGGTCGG
AGTTGGATTGAAGTTAAAAGGAAGATATATTCATTCATTTCCGTTGATGA
GTTTAACCCACAGATGGAGCAGCTCCATGCATTGTTGGCTGAATTGTCAG
CAGAGATGAAGGATCAAGGATATAAGCCGCARACCAAAGTTGTCCTCTAT
GATCTCGATGAGGAAGAGAAGGAACGAATAGTGTTAGGCCATAGTGAAAA
GTTAGCRGTTGCATTTGGACTCATAAATACCAAAAGAGGGGAAACTATTA
GGATTTCCAAGAACTTAAGGTTATGTGAAGATTGTCACTCTGTTACGAAG
TTCATTTCCAAATTCGCCAATAGAGAGATTCTGGTTCGAGATGTGAATCG
GTTTCACCATTTYCGTGACGGGGTTTGTTCATGTGGAGATTATTGGTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_rpt
IPR002885	Pentatricopeptide_rpt
IPR011990	TPR-like_helical_dom_sf
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom
IPR019775	WD40_repeat_CS
IPR020472	G-protein_beta_WD-40_rep

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005488	binding