MDP0000186402, MDP0000186402 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000186402
Unique Name	MDP0000186402
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	6880

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr6	chromosome	chr6:12239050..12245929 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC010684.209	contig	MDC010684.209:24750..31629 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000186402_exon_1	MDP0000186402_exon_1	Malus x domestica	CDS
MDP0000186402_exon_2	MDP0000186402_exon_2	Malus x domestica	CDS
MDP0000186402_exon_3	MDP0000186402_exon_3	Malus x domestica	CDS
MDP0000186402_exon_4	MDP0000186402_exon_4	Malus x domestica	CDS
MDP0000186402_exon_5	MDP0000186402_exon_5	Malus x domestica	CDS
MDP0000186402_exon_6	MDP0000186402_exon_6	Malus x domestica	CDS
MDP0000186402_exon_7	MDP0000186402_exon_7	Malus x domestica	CDS
MDP0000186402_exon_8	MDP0000186402_exon_8	Malus x domestica	CDS
MDP0000186402_exon_9	MDP0000186402_exon_9	Malus x domestica	CDS
MDP0000186402_exon_10	MDP0000186402_exon_10	Malus x domestica	CDS
MDP0000186402_exon_11	MDP0000186402_exon_11	Malus x domestica	CDS
MDP0000186402_exon_12	MDP0000186402_exon_12	Malus x domestica	CDS
MDP0000186402_exon_13	MDP0000186402_exon_13	Malus x domestica	CDS
MDP0000186402_exon_14	MDP0000186402_exon_14	Malus x domestica	CDS
MDP0000186402_exon_15	MDP0000186402_exon_15	Malus x domestica	CDS
MDP0000186402_exon_16	MDP0000186402_exon_16	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000186402	MDP0000186402	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 440..516 score: 4.9
IPR001650	Helicase, C-terminal	SMART	SM00490	helicase superfamily c-terminal domain	coord: 435..516 score: 3.4
IPR001650	Helicase, C-terminal	PROFILE	PS51194	HELICASE_CTER	coord: 411..556 score: 22
IPR011545	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	PFAM	PF00270	DEAD	coord: 161..301 score: 4.4
IPR014001	Helicase, superfamily 1/2, ATP-binding domain	SMART	SM00487	DEAD-like helicases superfamily	coord: 147..328 score: 2.4
IPR014001	Helicase, superfamily 1/2, ATP-binding domain	PROFILE	PS51192	HELICASE_ATP_BIND_1	coord: 161..315 score: 20
IPR014014	RNA helicase, DEAD-box type, Q motif	PROFILE	PS51195	Q_MOTIF	coord: 113..141 score: 7
None	No IPR available	GENE3D	3.40.50.300	no description	coord: 102..314 score: 7.8e-57coord: 398..553 score: 2.9
None	No IPR available	PANTHER	PTHR24031	FAMILY NOT NAMED	coord: 63..566 score: 2.2e
None	No IPR available	PANTHER	PTHR24031:SF5	SUBFAMILY NOT NAMED	coord: 63..566 score: 2.2e
None	No IPR available	SEG	seg	seg	coord: 76..87 score: NAcoord: 322..331 score
None	No IPR available	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 178..539 score: 1.4
None	No IPR available	SEG	seg	seg	coord: 34..57 score
None	No IPR available	SEG	seg	seg	coord: 27..41 score
None	No IPR available	SEG	seg	seg	coord: 70..92 score
None	No IPR available	SEG	seg	seg	coord: 9..24 score
None	No IPR available	SEG	seg	seg	coord: 6..26 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr6:12239050..12245929+
mRNA from alignment at MDC010684.209:24750..31629+
coding sequence from alignment at MDC010684.209:24750..31629+

mRNA sequence

>MDP0000186402 ID=MDP0000186402; Name=MDP0000186402; organism=Malus x domestica; type=mRNA; length=6880bp
ATGTCGGGGCGTGGGAGAGATGAGCCTCCATGGATATGTCTTCGCATAAA
CGACGACGTGTAAAAGAGGGAGATGAGACTAGATGGTGTTGGTAATTTCA
ATGCTTAGTTTATGTGGAAGAGGGTACTAATGCAAAAAACTTTACTTAAC
AGGTTAAAACAAATAACCCATGTTAGCACTCTCTTCTACATAACGATTGT
CAATGTTTATGTGAGACTAAGTAAGGTTTGTTTAGTAGTTGAAACTCACC
AGATTAACATTTTTTTAAAAACAAATTGAAACAGGTTCTTGTGGGTAGAT
TTGTTAAGAACTCGATATTAACCTATTGATTTGATAATGACTCAATTAGT
TAATGTATTAATTGGAAATTGTTATTTTTTATGTTATGATTGGATAATAA
CTCGATTAGTTAATGCATTAATCGGAAATTATTATTTTTTGTATTATTTC
GTATCGTATTAACGAGTTTCAAAAAATCTGCAGGTCTAGGTGAGTCCAAC
GCAACCGGGAGGGTGATTTCGTCCACTCACCATCCCCCACACTCCTATAT
CTTCTGCACTCCATTCGAAACCCTAAGTCCTCTCTTCCCTCTCTCCGAAC
CCAAACCCTAGATCTAGAGTACCCCTTCCCTCCATTCATCTCCCCCAAAC
TTTTTTTCAATTTTTGTACTTTTTTTTTCAAATTTTCACAGAGGTCTCGG
CACCTGCAGATTATCACTCCGTATCTCTCTCTCTCTTGCTCAGTGGAAGC
TCAAAGGTATGCAATTTAGAAAACCTTATCTGAGCTGTTGAATGAGTTCT
TGAAGTTTCTGATTCGCAATTCCTGGTGAAATTGTATTGGCTGAAAGTCT
AATTTTGGGTGGGTGTATAGAATGGGTGAAGTCAGAGACAACGATGGGTA
CGAAGAGGAGCTCGTCGACTACGAAGAGGAGGACCAAAACGCCCCCAACT
CCGTCTCTGCCAAGCCTTCTGGCGATACCGTCAAAAAGTTAGTGTCTTCA
GTTTATTTTATTTATTGTAAATCTGTATTTATTAATTTTTGATATAAAAT
TCACCTGAAATTACTATCACTAATCAATTGGGTCCTTGCTTATGTATGTA
TATAGATAAACGTTGTATTTTTTTAAATTTTGATTTTAGTAACACTTKTT
TTTTTTTTTTCCGGTCGGTTTGTTCTTAGATTATTGGTATTGTTTGCACA
TTTGATTGGTGAAACTGAGGAAAAAAAGTATATAAAGTATGGGTTCCTTC
GGTTCATTAAATTCTTCACAAAAAAATTTGATAGCATTTTTACTTGGGGT
CTTGTGCTGGTTTGCCTCATGCGTTTTCTATGATTTAATCAACTGAATAA
GGTTGACATTGTGAATGAGGTTGAGATTTAGCAGCCCAAGTATAGTTATC
TAATAATTGCGTGTCCGAATAAAAGAAATTAGACCGGAAAGTTAACCTTC
CTCTAGGCATTACTGTGGTTAGTGTGGGAAAAACATGATACTGTAGTGAT
TTATGGAAATTGCAGTTTCTTAATTTCTCAGTGGAGGGTAATGCTTCTAT
GCGTCTATCTCTTTGTTATGGCTTGATAAATGACAACAAAAGTTTGTTAA
GATGTGCTGTATGTCTAGCTAATCTGTAATTCATATTTGTGATGATTTAA
TGTTATTTTGGTTTTAGTCCCCAAAATCTATTCGTTCTAACCTATTATAT
AATATGGTTCAGGGGATATGTTGGCATCCATAGTTCGGGATTCAGAGACT
TCCTGTTGAAGCCGGAGCTTCTTCGAGCAATTGTGGATTCTGGATTCGAA
CATCCTTCGGAAGGCAAAGTTCTACTCTTTGTTTTCATTTTATGTCATTG
GTTATTCTTGAAATAAATTTCAAGAGGCATTAGGCTTTTGATCTTTTGGT
TGCGAAAAGATTGTTACATAATTATATATGGTTACGTCTCATTTTGTATT
CCTGGTTACAAAGTAAATGACTGAGTTCATGGCATACAACTTGAGTGTGC
ACTATAGACTCCGAATTACTTTTAACTTCTTGTTAGTTTAGCTGGTCTGG
GAATCGCTTTTAACTTCTTGGGAGTTTAGTTGGTCTGGTATGAGATGGCG
TCAATATATCAGTTCTTTGGATGAGTTTCTGTTAAGTTTGAAATTTCAAT
AAAGCTGTTGATGTCAAGTATCTAATTGTTAACCATCTTAAATATTCGAA
TGCCTTATKKTTTTTCCTCCATTGTTTTTATATGTTAGATTAGATGTGCC
ATAGGAATTGCTAATTTAAAACATGCAACAATGCGTAGGGCTATCCACAA
ATCCATTTTTACTTCTTACATACCCCTCTCGATTTTCAGCCGTTGGATTG
AATGAATTGAAGATTAATGGCCAAAAATTAACAAGGGTGTGTGAGAGGTA
AAAATGATTGTGTGAATATCAATATCCTTTGCAATTAGAGATGTGAACAC
TCCCTCATCACCTTATTTTTGTTACATGGAATGTGAGAATGGAAAGATTG
TTGTACTTGTTTAAGCATCTTCCATGTTTAACTGTTTCTGAATTTTTTGT
TTTCTTTTTTCTGTCCAGGTAATCACTAATTCCATATTCATGATTTCGGC
AAGAAAACTGGTTTGGTAAACCTTTCCATTAAATGGATCTGGAAGGTCAT
TTATACTTACTGAGGTTTCGTCCGGTACGATTTTGTTTGCTTCATCAGTT
CAACATGAGTGCATCCCTCAAGCTATTTTAGGAATGGATGTTATTTGTCA
AGCAAAATCTGGGATGGGAAAAAACTGCCGTCTTTGTTCTGTCAACCCTT
CAGCAAATAGATCCAGTAGCTGGTCAGGTTGCTGCTCTTATTCTTTGCCA
CACGAGAGAATTGGCTTACCAGGTATGTTCTGTGAATTTAAGTATAGAGA
AATCTATTTTTGAACTATTACAATGCTGATCTCTGTGTCAGTGTGTGATG
CATATATATATGTGTGTTGGATATGAAGCAAGAAATGTTTCCGTCGTACA
TTTCTATGTTCAGTTTCTGTTTCATGAACTAACCTCTGTGTTTCTCGGTA
CAGATTTGTCATGAATTTGAGAGGTTTAGTACTTATTTGCCGGACCTGAA
GGTTGCAGTTTTCTATGGAGGTGTTAGTATCAAGGTTCACAAAGATTTGC
TAAAAAATGAATGTCCTCACATTGTCGTTGGTACACCTGGGAGAGTATTA
GCTTTGGCAAGAGACAAAGAGCTTGGACTGAAGAATGTCAGACACTTTAT
TCTTGATGAATGCGATAAGATGCTTGAGTCACTTGGTAAGTGTTTTGCGG
CTAATTGTTAATGGACATTTCCTACAATTTCACTGTGGAAAAACTTGTTT
TTGTTTTGTTTGATTTATTTCTCCATTTGTTCTATCTTTTCAGACATGAG
GAGAGATGTGCAGGAGATATTTAAGTTGACTCCTCATGACAAGCAAGTGA
TGATGTTTTCAGCAACACTAAGCAAGGAAATACGCCCTGTTTGCAAGAAG
TTTATGCAAGATGTAATGTTCACTTTAATCCTTGACATGAATTTAGAAAT
AATCACCTTATTGTGAGTGTATATTGTTGGTATAATATTAATTACTGGTC
TTACTCCTAATTTATTAGAATTTTGCTCAACCGGTCTGCCTTGGACAGTG
AATCTGATCCCAAGGTTTTGGAGCAATCATATAACAGTCTACCTGTGTCA
GGCAGCATACGGAGATTTTTTCTTCGTCTTAGAGTATAATTATAATAATA
GAATGTTATGGATACTGCTTCTTGGTCTTATTGTTCACATTTGCTTATTA
TGGACATTGGAGGCCATTGTGTTTGAATTCAACTTGTGATCATATTTGTT
TGTTGCAGCCCATGGAAATTTATGTGGATGATGAGGCCAAATTGACTCTT
CATGGTCTCGTACAGGTAAGTCTAACATGTGAATCTGATTGATGATTTCT
TGTGTTGTTGGTTAAGTGTTTCTTGCTTGCTCACCCTTTTGCTCTCTTGC
TGCAGCACTACATCAAATTGAGTGAGCCTGAGAAAAACCGCAAGTTGACT
GACCTCCTTGATGCATTGGATTTCAACCAAGTTGTTATTTTTGTAAAGAG
TGTAAGCAGGGCAGCTGAGCTGAACAAGTTACTTGCTGACTGTAACTTCC
CCTCCATCTGCATTCACTCTGGAATGCCTCAGGAAGAAAGGTATGCCTTC
CATCCCTTTTGGATGACATCGAATGTGTGAGTGTCAAGCCTTCGTCCATA
TATTATTTTCTCACACCCCATTTTACCTCTCACACACCCTTTTAATTGTT
CAATGGTTTTTGAGGGTGTGAGAGGTAACATGGGGTGTGTGAAAATCACC
ACCCTATATATAATTACATAAAAAACTATTAAGCAAATAATAGGGTGTGC
GTGAAATAAACTTGGGGGTGTGAAAATCACCACTTTTATTGAAAACATAT
GCTAACAGTTGCTACCATTCATAGTAAGGGTTTAGTAATGTACTTGGTTG
TGTTATTCTACTATCCAAATGTTGCACAATTTTTTTACGCTAAAAGAGTG
AAATTCTTTTTTTKGTTTTTTTTTGTTTAAAGTTAAATTAGTATACTTTT
GGCTTATTAGAGTATTGTGAAATTGGTGCGTTGATTTGATTTCTTATGTA
CTACATTGTAAACTGTCAGACTTCTGTCCTAATAGATGCAATTTTTTGGT
TCTTTAATTCTTGATTGAGAAAGGGTAGTGCTATTCACACACCTCTTTTT
ACCTCCCACAGACCCTTGTCAATTGATGTCCACTGATCTTCTTCAATTCA
TTCGATCAGAAGGTCGGAAATTGAGAGGGGTGTGTGAGAAGWAAAAATGA
GTGGATAGCACCACCCTTGAGAAATTGTAGGTCCCTGTAGTTCACTATAG
CCTCAAGCAGGCTTATGCGAGTCCGTGCCCCAGCTTATAATTTCGTATGC
CTGTGCTCTTTTTTGGGATATATTGTTGGTTTACCGTGTGAATGCATTAT
GATCTGCAAGTACAGATGTGTTAATTACTTTTTAATCATTTTTATTATAA
CTATTCACTGTTGCTCCAGCTGGCTATAAAGCTTAGATACGGTGGAAGTA
ATTTTTTGAGAGTAACGTCATAATTAACATGTTTGTAAATTATGTTTCAT
ATCCTTTAAGTTAAAAAGAAGTCAAGTTTTCCCTCCATCTGAAGTTTATA
GTTAAAAAGAAGTCACTTATGCTTCTCTTTTTCTGCTGGTTACCTACAAC
TACCCATGAATGGATCACTCAAGATGTCCCTCAAGTAGAATCAATTCTAT
AGATATTACAATGATCATAGTCCTTCCAAATAATACCCTCATCTGACCTA
ATTCAGTGACTAATCTACCTACTTCCTTAGTTGGGACTCTCCTGTCGATT
AGCATCCATTAACTATGGTTCCTGTTCCTGTGATTATCCACTAGATCTCT
CCTTGCTACGTTTGGCTCTAGAGGATGATGTGTAAATCATAAAGCGAAGC
ATTTAGAGGAAGTAATTGCATTGTTTTAGCATAATTATATTCGGGATTTC
TGATTTCCTATTCATCATTTCTTATTTCTCCAGTATTTGTTGCATATGGC
ATGATTAGCACGCCCAATAATGTCACTGATTCTGGTCTGGTTTTAGAAAT
TGAAAATGAACAAAAAAGGGCCTTTGTTTCTTTTTTCTTTTCCTTATGAA
TAATAGGGGACCATTTACATGGTTTAAAAAATGTTTATGAATCTTATGTC
AGTAATTGTATGGTTTGGTTGGTTTGACTTTACTATCATTTCCACGTGAT
TGGAGGATGTTTTGTTGTTGCTTAGTTGGTTCTGAATTKTTTTTTTTTTT
GTTTTTGCTTGTTGTCTTTTGTTTATCTTGTTTGTGCATTAGACATTTAG
ATGAAGTTGTAAATTCAGTTTGGAGTGCAGATGGCTAAAAAGGAGTGCCA
AAATTGTTGTGTGGGATTTAGCCTCATCTAATTTGCATGGTTTTCCGATT
GCAGGCTAAAACGTTACAAGAATTTCAAGGAGGGGCTTTCAAGAATTCTT
GTGGCAACAGATTTAGTAGGAAGGGGAATTGACATTGAGCGTGTTAACAT
TGTTATCAATTATGACATGCCTGATTCTGCTGATACCTACTTGCACAGGG
TATTGTTTCATTTGCATATCCGTGTTAACAGTTTTGTTGTTTGCCTATGT
TTGTCGGGGGCGTACACACTGTCCCTAAACTCTGGCTGTGGCTGATGGGT
TTTCCTTCCTTCACAGGTTGGCAGAGCTGGTAGGTTTGGTACCAAGGGGC
TAGCAATTACATTTGTATCTTCTGCATCTGATTCAGAAGTTCTTAATCAG
GTAAGTTGTGTGCTTACGTATGTACTATATGTATATAATACATAACCATA
TAAACATAATTCAATACTGGCCGAATTTCTTATGCTTCTGCTATTCCTTC
TCTTAATCGAAATCGATCGGTTCAGGTCCAGTCAAGGTTTGAGGTGGACA
TAAAGGAGCTTCCCGAGCAAATTGATACTTCTACTTACAGTAAGATATCC
TTTTTTCATAAATTGTACATGATCTAGTATAAGCATTAACACAGTAACGA
TGAATGAAGTACCGTCAATAGTGAATGTGACACGCATGAATCGAGATACT
TGTTTTTTTTTTTCTGTTCAGGAAAAGATAAAAGAAAAATCTGGAATCAT
GATGAAATCTTGTGGCACTCTTGCCTTGTAATTTCTGATACAGATATACT
CACAAATTGTTCTGGTTTATGCAGTGCAAGTGTAATCATTTTCCGAAGGG
AACCCTGCAAAATTCAGGCGACGGTGGACTCTGGATCTGGTTGCCTTGTT
CCGGTTCAGTTAGTAGCACATTTGTTTTGA

protein sequence of MDP0000186402

>MDP0000186402 ID=MDP0000186402; Name=MDP0000186402; organism=Malus x domestica; type=polypeptide; length=626bp
MSGRGRDEPPWICLRINDDVLKQITHVSTLFYITIVNVYVRLSKRSRHLQ
IITPYLSLSCSVEAQRMGEVRDNDGYEEELVDYEEEDQNAPNSVSAKPSG
DTVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKVITNSIFMIS
ARKLQNLGWEKTAVFVLSTLQQIDPVAGQVAALILCHTRELAYQICHEFE
RFSTYLPDLKVAVFYGGVSIKVHKDLLKNECPHIVVGTPGRVLALARDKE
LGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKE
IRPVCKKFMQDVMFTLILDMNLEIITLLILLNRSALDSESDPKVLEQSYN
SLPVSGSIRRFFLRLRPMEIYVDDEAKLTLHGLVQCFLLAHPFALLLQHY
IKLSEPEKNRKLTDLLDALDFNQVVIFVKSVSRAAELNKLLADCNFPSIC
IHSGMPQEERLKRYKNFKEGLSRILVATDLVGRGIDIERVNIVINYDMPD
SADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQSRFEVDIKELPE
QIDTSTYRKDKRKIWNHDEILWHSCLVISDTDILTNCSGLCSASVIIFRR
EPCKIQATVDSGSGCLVPVQLVAHLF

mRNA from alignment at chr6:12239050..12245929+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000186402 ID=MDP0000186402; Name=MDP0000186402; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr6:12239050..12245929+ (Malus x domestica

mRNA from alignment at MDC010684.209:24750..31629+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000186402 ID=MDP0000186402; Name=MDP0000186402; organism=Malus x domestica; type=mRNA; length=6880bp; location=Sequence derived from: MDC010684.209:24750..31629+ (Malus x domestica
ATGTCGGGGCGTGGGAGAGATGAGCCTCCATGGATATGTCTTCGCATAAA
CGACGACGTGTAAAAGAGGGAGATGAGACTAGATGGTGTTGGTAATTTCA
ATGCTTAGTTTATGTGGAAGAGGGTACTAATGCAAAAAACTTTACTTAAC
AGGTTAAAACAAATAACCCATGTTAGCACTCTCTTCTACATAACGATTGT
CAATGTTTATGTGAGACTAAGTAAGGTTTGTTTAGTAGTTGAAACTCACC
AGATTAACATTTTTTTAAAAACAAATTGAAACAGGTTCTTGTGGGTAGAT
TTGTTAAGAACTCGATATTAACCTATTGATTTGATAATGACTCAATTAGT
TAATGTATTAATTGGAAATTGTTATTTTTTATGTTATGATTGGATAATAA
CTCGATTAGTTAATGCATTAATCGGAAATTATTATTTTTTGTATTATTTC
GTATCGTATTAACGAGTTTCAAAAAATCTGCAGGTCTAGGTGAGTCCAAC
GCAACCGGGAGGGTGATTTCGTCCACTCACCATCCCCCACACTCCTATAT
CTTCTGCACTCCATTCGAAACCCTAAGTCCTCTCTTCCCTCTCTCCGAAC
CCAAACCCTAGATCTAGAGTACCCCTTCCCTCCATTCATCTCCCCCAAAC
TTTTTTTCAATTTTTGTACTTTTTTTTTCAAATTTTCACAGAGGTCTCGG
CACCTGCAGATTATCACTCCGTATCTCTCTCTCTCTTGCTCAGTGGAAGC
TCAAAGGTATGCAATTTAGAAAACCTTATCTGAGCTGTTGAATGAGTTCT
TGAAGTTTCTGATTCGCAATTCCTGGTGAAATTGTATTGGCTGAAAGTCT
AATTTTGGGTGGGTGTATAGAATGGGTGAAGTCAGAGACAACGATGGGTA
CGAAGAGGAGCTCGTCGACTACGAAGAGGAGGACCAAAACGCCCCCAACT
CCGTCTCTGCCAAGCCTTCTGGCGATACCGTCAAAAAGTTAGTGTCTTCA
GTTTATTTTATTTATTGTAAATCTGTATTTATTAATTTTTGATATAAAAT
TCACCTGAAATTACTATCACTAATCAATTGGGTCCTTGCTTATGTATGTA
TATAGATAAACGTTGTATTTTTTTAAATTTTGATTTTAGTAACACTTKTT
TTTTTTTTTTCCGGTCGGTTTGTTCTTAGATTATTGGTATTGTTTGCACA
TTTGATTGGTGAAACTGAGGAAAAAAAGTATATAAAGTATGGGTTCCTTC
GGTTCATTAAATTCTTCACAAAAAAATTTGATAGCATTTTTACTTGGGGT
CTTGTGCTGGTTTGCCTCATGCGTTTTCTATGATTTAATCAACTGAATAA
GGTTGACATTGTGAATGAGGTTGAGATTTAGCAGCCCAAGTATAGTTATC
TAATAATTGCGTGTCCGAATAAAAGAAATTAGACCGGAAAGTTAACCTTC
CTCTAGGCATTACTGTGGTTAGTGTGGGAAAAACATGATACTGTAGTGAT
TTATGGAAATTGCAGTTTCTTAATTTCTCAGTGGAGGGTAATGCTTCTAT
GCGTCTATCTCTTTGTTATGGCTTGATAAATGACAACAAAAGTTTGTTAA
GATGTGCTGTATGTCTAGCTAATCTGTAATTCATATTTGTGATGATTTAA
TGTTATTTTGGTTTTAGTCCCCAAAATCTATTCGTTCTAACCTATTATAT
AATATGGTTCAGGGGATATGTTGGCATCCATAGTTCGGGATTCAGAGACT
TCCTGTTGAAGCCGGAGCTTCTTCGAGCAATTGTGGATTCTGGATTCGAA
CATCCTTCGGAAGGCAAAGTTCTACTCTTTGTTTTCATTTTATGTCATTG
GTTATTCTTGAAATAAATTTCAAGAGGCATTAGGCTTTTGATCTTTTGGT
TGCGAAAAGATTGTTACATAATTATATATGGTTACGTCTCATTTTGTATT
CCTGGTTACAAAGTAAATGACTGAGTTCATGGCATACAACTTGAGTGTGC
ACTATAGACTCCGAATTACTTTTAACTTCTTGTTAGTTTAGCTGGTCTGG
GAATCGCTTTTAACTTCTTGGGAGTTTAGTTGGTCTGGTATGAGATGGCG
TCAATATATCAGTTCTTTGGATGAGTTTCTGTTAAGTTTGAAATTTCAAT
AAAGCTGTTGATGTCAAGTATCTAATTGTTAACCATCTTAAATATTCGAA
TGCCTTATKKTTTTTCCTCCATTGTTTTTATATGTTAGATTAGATGTGCC
ATAGGAATTGCTAATTTAAAACATGCAACAATGCGTAGGGCTATCCACAA
ATCCATTTTTACTTCTTACATACCCCTCTCGATTTTCAGCCGTTGGATTG
AATGAATTGAAGATTAATGGCCAAAAATTAACAAGGGTGTGTGAGAGGTA
AAAATGATTGTGTGAATATCAATATCCTTTGCAATTAGAGATGTGAACAC
TCCCTCATCACCTTATTTTTGTTACATGGAATGTGAGAATGGAAAGATTG
TTGTACTTGTTTAAGCATCTTCCATGTTTAACTGTTTCTGAATTTTTTGT
TTTCTTTTTTCTGTCCAGGTAATCACTAATTCCATATTCATGATTTCGGC
AAGAAAACTGGTTTGGTAAACCTTTCCATTAAATGGATCTGGAAGGTCAT
TTATACTTACTGAGGTTTCGTCCGGTACGATTTTGTTTGCTTCATCAGTT
CAACATGAGTGCATCCCTCAAGCTATTTTAGGAATGGATGTTATTTGTCA
AGCAAAATCTGGGATGGGAAAAAACTGCCGTCTTTGTTCTGTCAACCCTT
CAGCAAATAGATCCAGTAGCTGGTCAGGTTGCTGCTCTTATTCTTTGCCA
CACGAGAGAATTGGCTTACCAGGTATGTTCTGTGAATTTAAGTATAGAGA
AATCTATTTTTGAACTATTACAATGCTGATCTCTGTGTCAGTGTGTGATG
CATATATATATGTGTGTTGGATATGAAGCAAGAAATGTTTCCGTCGTACA
TTTCTATGTTCAGTTTCTGTTTCATGAACTAACCTCTGTGTTTCTCGGTA
CAGATTTGTCATGAATTTGAGAGGTTTAGTACTTATTTGCCGGACCTGAA
GGTTGCAGTTTTCTATGGAGGTGTTAGTATCAAGGTTCACAAAGATTTGC
TAAAAAATGAATGTCCTCACATTGTCGTTGGTACACCTGGGAGAGTATTA
GCTTTGGCAAGAGACAAAGAGCTTGGACTGAAGAATGTCAGACACTTTAT
TCTTGATGAATGCGATAAGATGCTTGAGTCACTTGGTAAGTGTTTTGCGG
CTAATTGTTAATGGACATTTCCTACAATTTCACTGTGGAAAAACTTGTTT
TTGTTTTGTTTGATTTATTTCTCCATTTGTTCTATCTTTTCAGACATGAG
GAGAGATGTGCAGGAGATATTTAAGTTGACTCCTCATGACAAGCAAGTGA
TGATGTTTTCAGCAACACTAAGCAAGGAAATACGCCCTGTTTGCAAGAAG
TTTATGCAAGATGTAATGTTCACTTTAATCCTTGACATGAATTTAGAAAT
AATCACCTTATTGTGAGTGTATATTGTTGGTATAATATTAATTACTGGTC
TTACTCCTAATTTATTAGAATTTTGCTCAACCGGTCTGCCTTGGACAGTG
AATCTGATCCCAAGGTTTTGGAGCAATCATATAACAGTCTACCTGTGTCA
GGCAGCATACGGAGATTTTTTCTTCGTCTTAGAGTATAATTATAATAATA
GAATGTTATGGATACTGCTTCTTGGTCTTATTGTTCACATTTGCTTATTA
TGGACATTGGAGGCCATTGTGTTTGAATTCAACTTGTGATCATATTTGTT
TGTTGCAGCCCATGGAAATTTATGTGGATGATGAGGCCAAATTGACTCTT
CATGGTCTCGTACAGGTAAGTCTAACATGTGAATCTGATTGATGATTTCT
TGTGTTGTTGGTTAAGTGTTTCTTGCTTGCTCACCCTTTTGCTCTCTTGC
TGCAGCACTACATCAAATTGAGTGAGCCTGAGAAAAACCGCAAGTTGACT
GACCTCCTTGATGCATTGGATTTCAACCAAGTTGTTATTTTTGTAAAGAG
TGTAAGCAGGGCAGCTGAGCTGAACAAGTTACTTGCTGACTGTAACTTCC
CCTCCATCTGCATTCACTCTGGAATGCCTCAGGAAGAAAGGTATGCCTTC
CATCCCTTTTGGATGACATCGAATGTGTGAGTGTCAAGCCTTCGTCCATA
TATTATTTTCTCACACCCCATTTTACCTCTCACACACCCTTTTAATTGTT
CAATGGTTTTTGAGGGTGTGAGAGGTAACATGGGGTGTGTGAAAATCACC
ACCCTATATATAATTACATAAAAAACTATTAAGCAAATAATAGGGTGTGC
GTGAAATAAACTTGGGGGTGTGAAAATCACCACTTTTATTGAAAACATAT
GCTAACAGTTGCTACCATTCATAGTAAGGGTTTAGTAATGTACTTGGTTG
TGTTATTCTACTATCCAAATGTTGCACAATTTTTTTACGCTAAAAGAGTG
AAATTCTTTTTTTKGTTTTTTTTTGTTTAAAGTTAAATTAGTATACTTTT
GGCTTATTAGAGTATTGTGAAATTGGTGCGTTGATTTGATTTCTTATGTA
CTACATTGTAAACTGTCAGACTTCTGTCCTAATAGATGCAATTTTTTGGT
TCTTTAATTCTTGATTGAGAAAGGGTAGTGCTATTCACACACCTCTTTTT
ACCTCCCACAGACCCTTGTCAATTGATGTCCACTGATCTTCTTCAATTCA
TTCGATCAGAAGGTCGGAAATTGAGAGGGGTGTGTGAGAAGWAAAAATGA
GTGGATAGCACCACCCTTGAGAAATTGTAGGTCCCTGTAGTTCACTATAG
CCTCAAGCAGGCTTATGCGAGTCCGTGCCCCAGCTTATAATTTCGTATGC
CTGTGCTCTTTTTTGGGATATATTGTTGGTTTACCGTGTGAATGCATTAT
GATCTGCAAGTACAGATGTGTTAATTACTTTTTAATCATTTTTATTATAA
CTATTCACTGTTGCTCCAGCTGGCTATAAAGCTTAGATACGGTGGAAGTA
ATTTTTTGAGAGTAACGTCATAATTAACATGTTTGTAAATTATGTTTCAT
ATCCTTTAAGTTAAAAAGAAGTCAAGTTTTCCCTCCATCTGAAGTTTATA
GTTAAAAAGAAGTCACTTATGCTTCTCTTTTTCTGCTGGTTACCTACAAC
TACCCATGAATGGATCACTCAAGATGTCCCTCAAGTAGAATCAATTCTAT
AGATATTACAATGATCATAGTCCTTCCAAATAATACCCTCATCTGACCTA
ATTCAGTGACTAATCTACCTACTTCCTTAGTTGGGACTCTCCTGTCGATT
AGCATCCATTAACTATGGTTCCTGTTCCTGTGATTATCCACTAGATCTCT
CCTTGCTACGTTTGGCTCTAGAGGATGATGTGTAAATCATAAAGCGAAGC
ATTTAGAGGAAGTAATTGCATTGTTTTAGCATAATTATATTCGGGATTTC
TGATTTCCTATTCATCATTTCTTATTTCTCCAGTATTTGTTGCATATGGC
ATGATTAGCACGCCCAATAATGTCACTGATTCTGGTCTGGTTTTAGAAAT
TGAAAATGAACAAAAAAGGGCCTTTGTTTCTTTTTTCTTTTCCTTATGAA
TAATAGGGGACCATTTACATGGTTTAAAAAATGTTTATGAATCTTATGTC
AGTAATTGTATGGTTTGGTTGGTTTGACTTTACTATCATTTCCACGTGAT
TGGAGGATGTTTTGTTGTTGCTTAGTTGGTTCTGAATTKTTTTTTTTTTT
GTTTTTGCTTGTTGTCTTTTGTTTATCTTGTTTGTGCATTAGACATTTAG
ATGAAGTTGTAAATTCAGTTTGGAGTGCAGATGGCTAAAAAGGAGTGCCA
AAATTGTTGTGTGGGATTTAGCCTCATCTAATTTGCATGGTTTTCCGATT
GCAGGCTAAAACGTTACAAGAATTTCAAGGAGGGGCTTTCAAGAATTCTT
GTGGCAACAGATTTAGTAGGAAGGGGAATTGACATTGAGCGTGTTAACAT
TGTTATCAATTATGACATGCCTGATTCTGCTGATACCTACTTGCACAGGG
TATTGTTTCATTTGCATATCCGTGTTAACAGTTTTGTTGTTTGCCTATGT
TTGTCGGGGGCGTACACACTGTCCCTAAACTCTGGCTGTGGCTGATGGGT
TTTCCTTCCTTCACAGGTTGGCAGAGCTGGTAGGTTTGGTACCAAGGGGC
TAGCAATTACATTTGTATCTTCTGCATCTGATTCAGAAGTTCTTAATCAG
GTAAGTTGTGTGCTTACGTATGTACTATATGTATATAATACATAACCATA
TAAACATAATTCAATACTGGCCGAATTTCTTATGCTTCTGCTATTCCTTC
TCTTAATCGAAATCGATCGGTTCAGGTCCAGTCAAGGTTTGAGGTGGACA
TAAAGGAGCTTCCCGAGCAAATTGATACTTCTACTTACAGTAAGATATCC
TTTTTTCATAAATTGTACATGATCTAGTATAAGCATTAACACAGTAACGA
TGAATGAAGTACCGTCAATAGTGAATGTGACACGCATGAATCGAGATACT
TGTTTTTTTTTTTCTGTTCAGGAAAAGATAAAAGAAAAATCTGGAATCAT
GATGAAATCTTGTGGCACTCTTGCCTTGTAATTTCTGATACAGATATACT
CACAAATTGTTCTGGTTTATGCAGTGCAAGTGTAATCATTTTCCGAAGGG
AACCCTGCAAAATTCAGGCGACGGTGGACTCTGGATCTGGTTGCCTTGTT
CCGGTTCAGTTAGTAGCACATTTGTTTTGA

Coding sequence (CDS) from alignment at MDC010684.209:24750..31629+

>MDP0000186402 ID=MDP0000186402; Name=MDP0000186402; organism=Malus x domestica; type=CDS; length=1881bp; location=Sequence derived from: MDC010684.209:24750..31629+ (Malus x domestica
ATGTCGGGGCGTGGGAGAGATGAGCCTCCATGGATATGTCTTCGCATAAA
CGACGACGTGTTAAAACAAATAACCCATGTTAGCACTCTCTTCTACATAA
CGATTGTCAATGTTTATGTGAGACTAAGTAAGAGGTCTCGGCACCTGCAG
ATTATCACTCCGTATCTCTCTCTCTCTTGCTCAGTGGAAGCTCAAAGAAT
GGGTGAAGTCAGAGACAACGATGGGTACGAAGAGGAGCTCGTCGACTACG
AAGAGGAGGACCAAAACGCCCCCAACTCCGTCTCTGCCAAGCCTTCTGGC
GATACCGTCAAAAAGGGATATGTTGGCATCCATAGTTCGGGATTCAGAGA
CTTCCTGTTGAAGCCGGAGCTTCTTCGAGCAATTGTGGATTCTGGATTCG
AACATCCTTCGGAAGGCAAAGTAATCACTAATTCCATATTCATGATTTCG
GCAAGAAAACTGCAAAATCTGGGATGGGAAAAAACTGCCGTCTTTGTTCT
GTCAACCCTTCAGCAAATAGATCCAGTAGCTGGTCAGGTTGCTGCTCTTA
TTCTTTGCCACACGAGAGAATTGGCTTACCAGATTTGTCATGAATTTGAG
AGGTTTAGTACTTATTTGCCGGACCTGAAGGTTGCAGTTTTCTATGGAGG
TGTTAGTATCAAGGTTCACAAAGATTTGCTAAAAAATGAATGTCCTCACA
TTGTCGTTGGTACACCTGGGAGAGTATTAGCTTTGGCAAGAGACAAAGAG
CTTGGACTGAAGAATGTCAGACACTTTATTCTTGATGAATGCGATAAGAT
GCTTGAGTCACTTGACATGAGGAGAGATGTGCAGGAGATATTTAAGTTGA
CTCCTCATGACAAGCAAGTGATGATGTTTTCAGCAACACTAAGCAAGGAA
ATACGCCCTGTTTGCAAGAAGTTTATGCAAGATGTAATGTTCACTTTAAT
CCTTGACATGAATTTAGAAATAATCACCTTATTAATTTTGCTCAACCGGT
CTGCCTTGGACAGTGAATCTGATCCCAAGGTTTTGGAGCAATCATATAAC
AGTCTACCTGTGTCAGGCAGCATACGGAGATTTTTTCTTCGTCTTAGACC
CATGGAAATTTATGTGGATGATGAGGCCAAATTGACTCTTCATGGTCTCG
TACAGTGTTTCTTGCTTGCTCACCCTTTTGCTCTCTTGCTGCAGCACTAC
ATCAAATTGAGTGAGCCTGAGAAAAACCGCAAGTTGACTGACCTCCTTGA
TGCATTGGATTTCAACCAAGTTGTTATTTTTGTAAAGAGTGTAAGCAGGG
CAGCTGAGCTGAACAAGTTACTTGCTGACTGTAACTTCCCCTCCATCTGC
ATTCACTCTGGAATGCCTCAGGAAGAAAGGCTAAAACGTTACAAGAATTT
CAAGGAGGGGCTTTCAAGAATTCTTGTGGCAACAGATTTAGTAGGAAGGG
GAATTGACATTGAGCGTGTTAACATTGTTATCAATTATGACATGCCTGAT
TCTGCTGATACCTACTTGCACAGGGTTGGCAGAGCTGGTAGGTTTGGTAC
CAAGGGGCTAGCAATTACATTTGTATCTTCTGCATCTGATTCAGAAGTTC
TTAATCAGGTCCAGTCAAGGTTTGAGGTGGACATAAAGGAGCTTCCCGAG
CAAATTGATACTTCTACTTACAGAAAAGATAAAAGAAAAATCTGGAATCA
TGATGAAATCTTGTGGCACTCTTGCCTTGTAATTTCTGATACAGATATAC
TCACAAATTGTTCTGGTTTATGCAGTGCAAGTGTAATCATTTTCCGAAGG
GAACCCTGCAAAATTCAGGCGACGGTGGACTCTGGATCTGGTTGCCTTGT
TCCGGTTCAGTTAGTAGCACATTTGTTTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C-like
IPR011545	DEAD/DEAH_box_helicase_dom
IPR014001	Helicase_ATP-bd
IPR014014	RNA_helicase_DEAD_Q_motif

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0004386	helicase activity
GO:0005524	ATP binding
GO:0008026	ATP-dependent helicase activity