MDP0000187054, MDP0000187054 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000187054
Unique Name	MDP0000187054
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	2741

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr14	chromosome	chr14:17719285..17722025 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC010499.333	contig	MDC010499.333:3686..6426 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000187054_exon_1	MDP0000187054_exon_1	Malus x domestica	CDS
MDP0000187054_exon_2	MDP0000187054_exon_2	Malus x domestica	CDS
MDP0000187054_exon_3	MDP0000187054_exon_3	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000187054	MDP0000187054	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 84..177 score: 5.6
None	No IPR available	SEG	seg	seg	coord: 6..22 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:17719285..17722025-
mRNA from alignment at MDC010499.333:3686..6426-
coding sequence from alignment at MDC010499.333:3686..6426-

mRNA sequence

>MDP0000187054 ID=MDP0000187054; Name=MDP0000187054; organism=Malus x domestica; type=mRNA; length=2741bp
ATGGTTGCATTGTTTCTATACAACCTTGCACATCATCTTAAGAATTGCAC
GGTTAAGCACCACTTTAGAAAGTCTGGTCGAACAATTAGTAAGTATTTCC
ATGAGTGTATTAAAGCAATGATTCAATGCCAAAAGGATTTCTGGCAAACA
CCTGAGCTTATTCCTGAGAACTCAACCGACCCAAAGTGGAAATGGTTTAA
GGTATGTAGTATTTACATGCCTACACTATTTTGTAATTACTAGTTTATAT
TTTATAGTTTAATTTGTTAATTTAGTTGCCTATTATACTATATAATTGCT
TAGGTGTGCTAGATGGAACACTAATTAAGGTGCATATACAAAATCTGATA
AACCAAAGTACAAAATAAGGAAAAATGAAATAGTAACTAATGTTTTGGGA
GTCTACATTCCAGACATACAGTTTATTTATGTTTTACCTGGATGGGAAGG
GTCCACACATGATGGTCGAGTCCTTAGAGATGTTGTGACTAGGAGAAATG
GATTATAAGTCCCTAATGATAACATTCACAACTTTGAGTAATTAAACTTC
TTAGCTTTTGAATTCCACGTGATATAGAGTTGCAAGGTTGACAATTTAAT
TCTTTGTCACAATAGGTTGTTATTATTTAGTTGATKGGKTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTKYKATYTTATAGATAAACATGTTATCATCTA
AATGAGTGGAAAGATTCTTTGTCACAATAGGTTGTTATTATTTAGTTGAT
GGGGGCTACATAAACGGAAAAGTTTTTTTTTTTTTTTTTTTTGCATCTTA
TAGATAAACATGTTATCATCTAAATGAGTGGAAAGATGGTTATCGTCCTA
CAACACCCCCTAAGTTTTTTAATATGAAACAAGTTCTAGAATGTCATTGA
AAGGTGTTTTGGGCTATTTAAAATGTGTTGGGGAATTCTTAGGAGTCCAT
CCTTTTATGACATTAAACGCATCATCCTATAATTTTAGTGTGTTGTATGA
TCCATAATTTTAGTATGTTGTATGATCCATAATTTTTATAAGAAGAGAGA
TGGTTGTAGATCTAATAGAAGCTGATGCAAACGGGAAATTCCAAGATGGC
AATTCAGATGCGAATAACTACATTACCATTGTTGAGTCCTAAGATGAATG
GACTGCATGAAGGGATAACCTTGCATAAGAAATGTGGAACACTAAGGCGG
TTCATTAAACTAGTGTTTCATGTGTCCTTTTGTTTTAAGTTAATGAAGGC
ATTAGTATGTCTTTTTCTATTATAATGTTTTGTAATAGCATTTGTAATAA
CATTTGGAATGCTTATTTTGTTTCTAAGTTAAGACGGACATCATTGTTTA
GGTAATAACATTTGGAATGCTTTATTTATTTCTATGTTAAGAAAGACATC
ATTGTTTGTAATCAAAATCATTTGGAATGCTTATGATTTCCAATACTATT
TGTGTAATAACATTTGGAATGATTTATTTGTTTCTAAGTTAAGAAAAATA
TCACTATTTGTAATCAAAATCATTTGGAATGATTATGATTTCTAATACTA
TTTGTGTAATAACATTTGGAATTATTTATTTGTTTCTAAGTTAATAAAGA
CATCATTGTTTGTAATCAAACTTATTTGGAATGCTTATGATTTCTAATAT
TGTTATGTAGAATGGCACCTGTTTCATCTGCAAAACGAGAAAGGGACAAC
AAAAACACTATTGGACAACTATTGAGGAGACAATATTGGTTGAGTCATTG
CTTGAATTGCATAGTGACCCGACTTGGCGAGCTAACACCAGTTTCAAGAA
TGGTTATTTGGAGAAGATAGAAGCTATGATGGAAGCCAAACTTCCAGGGT
GTGGATTAAAGGCGTTTCCCTACATTCAATCACAAATCAAGACGTTGAAG
GCAAAATATTTTGTCGTAACTGAATTGCTAGCACTTAGTGGATTTGAGGG
GAATAAAGAGAAAATKATGTTTGTTTGTGAGAAAAGTGTGTATGATGAAA
CTACAAGGGTATGCATATACATAAATCATCGCTTGAAACCAATTGATATA
GTAATTTGACTGGATATATATAAATTTTTAAAAATATTGTGAGTAATCAT
CACTTGAAGCTAATTGATATAGTTATATATTGACGATCTCAAAATCTTTT
AAACTATTAATTTGCAAGACTTTTTGTGCATGTTTACTTATATTTGAGAG
AGGTTAAATTACCAAACATCCCCTTATTTTCTATGTGCATGAAACAAATC
ATCTCGAACATATAATATTATCATCATGCAACAACAATGTATCAGTCGTT
TTAAATGTTTGGCATGCACATCACGATTTTTAATAAGAAACATACTAGAT
TTATGTTAAGTCCTACTTAGAAATCAATGTGGTATTTGAGATTGCATTTA
TATGATTCTATTTTATTTTAGAGTTTTCTTTCATGCTTTGGGTTTTGCGT
TTGTAGGGTAAAAAGGATGCAAATGGATTGTATGATAAGGCTTTTCCGCA
CTACCACACTTTGGGAGAGATTTATGTGAAAGATCGTGTTGTGGGTGCAA
ATGCTGGTAAAGTTGATGACAAGGAAGAAGTTAGACTTGAATATGTCAAT
GTCAATGAGAATGAATGTGAGGATGAAAGTGGTTATGATGTTGACATGTA
TTTCTTAGTACCAAATACCTTACAACAACAAAATGCAGAAAGTAATACAT
CAAACAGTAGTCATAGGGGGCAAGAGTTGAGGATGAAATAG

protein sequence of MDP0000187054

>MDP0000187054 ID=MDP0000187054; Name=MDP0000187054; organism=Malus x domestica; type=polypeptide; length=277bp
MVALFLYNLAHHLKNCTVKHHFRKSGRTISKYFHECIKAMIQCQKDFWQT
PELIPENSTDPKWKWFKNGTCFICKTRKGQQKHYWTTIEETILVESLLEL
HSDPTWRANTSFKNGYLEKIEAMMEAKLPGCGLKAFPYIQSQIKTLKAKY
FVVTELLALSGFEGNKEKXMFVCEKSVYDETTRGKKDANGLYDKAFPHYH
TLGEIYVKDRVVGANAGKVDDKEEVRLEYVNVNENECEDESGYDVDMYFL
VPNTLQQQNAESNTSNSSHRGQELRMK

mRNA from alignment at chr14:17719285..17722025-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000187054 ID=MDP0000187054; Name=MDP0000187054; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr14:17719285..17722025- (Malus x domestica

mRNA from alignment at MDC010499.333:3686..6426-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000187054 ID=MDP0000187054; Name=MDP0000187054; organism=Malus x domestica; type=mRNA; length=2741bp; location=Sequence derived from: MDC010499.333:3686..6426- (Malus x domestica
ATGGTTGCATTGTTTCTATACAACCTTGCACATCATCTTAAGAATTGCAC
GGTTAAGCACCACTTTAGAAAGTCTGGTCGAACAATTAGTAAGTATTTCC
ATGAGTGTATTAAAGCAATGATTCAATGCCAAAAGGATTTCTGGCAAACA
CCTGAGCTTATTCCTGAGAACTCAACCGACCCAAAGTGGAAATGGTTTAA
GGTATGTAGTATTTACATGCCTACACTATTTTGTAATTACTAGTTTATAT
TTTATAGTTTAATTTGTTAATTTAGTTGCCTATTATACTATATAATTGCT
TAGGTGTGCTAGATGGAACACTAATTAAGGTGCATATACAAAATCTGATA
AACCAAAGTACAAAATAAGGAAAAATGAAATAGTAACTAATGTTTTGGGA
GTCTACATTCCAGACATACAGTTTATTTATGTTTTACCTGGATGGGAAGG
GTCCACACATGATGGTCGAGTCCTTAGAGATGTTGTGACTAGGAGAAATG
GATTATAAGTCCCTAATGATAACATTCACAACTTTGAGTAATTAAACTTC
TTAGCTTTTGAATTCCACGTGATATAGAGTTGCAAGGTTGACAATTTAAT
TCTTTGTCACAATAGGTTGTTATTATTTAGTTGATKGGKTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTKYKATYTTATAGATAAACATGTTATCATCTA
AATGAGTGGAAAGATTCTTTGTCACAATAGGTTGTTATTATTTAGTTGAT
GGGGGCTACATAAACGGAAAAGTTTTTTTTTTTTTTTTTTTTGCATCTTA
TAGATAAACATGTTATCATCTAAATGAGTGGAAAGATGGTTATCGTCCTA
CAACACCCCCTAAGTTTTTTAATATGAAACAAGTTCTAGAATGTCATTGA
AAGGTGTTTTGGGCTATTTAAAATGTGTTGGGGAATTCTTAGGAGTCCAT
CCTTTTATGACATTAAACGCATCATCCTATAATTTTAGTGTGTTGTATGA
TCCATAATTTTAGTATGTTGTATGATCCATAATTTTTATAAGAAGAGAGA
TGGTTGTAGATCTAATAGAAGCTGATGCAAACGGGAAATTCCAAGATGGC
AATTCAGATGCGAATAACTACATTACCATTGTTGAGTCCTAAGATGAATG
GACTGCATGAAGGGATAACCTTGCATAAGAAATGTGGAACACTAAGGCGG
TTCATTAAACTAGTGTTTCATGTGTCCTTTTGTTTTAAGTTAATGAAGGC
ATTAGTATGTCTTTTTCTATTATAATGTTTTGTAATAGCATTTGTAATAA
CATTTGGAATGCTTATTTTGTTTCTAAGTTAAGACGGACATCATTGTTTA
GGTAATAACATTTGGAATGCTTTATTTATTTCTATGTTAAGAAAGACATC
ATTGTTTGTAATCAAAATCATTTGGAATGCTTATGATTTCCAATACTATT
TGTGTAATAACATTTGGAATGATTTATTTGTTTCTAAGTTAAGAAAAATA
TCACTATTTGTAATCAAAATCATTTGGAATGATTATGATTTCTAATACTA
TTTGTGTAATAACATTTGGAATTATTTATTTGTTTCTAAGTTAATAAAGA
CATCATTGTTTGTAATCAAACTTATTTGGAATGCTTATGATTTCTAATAT
TGTTATGTAGAATGGCACCTGTTTCATCTGCAAAACGAGAAAGGGACAAC
AAAAACACTATTGGACAACTATTGAGGAGACAATATTGGTTGAGTCATTG
CTTGAATTGCATAGTGACCCGACTTGGCGAGCTAACACCAGTTTCAAGAA
TGGTTATTTGGAGAAGATAGAAGCTATGATGGAAGCCAAACTTCCAGGGT
GTGGATTAAAGGCGTTTCCCTACATTCAATCACAAATCAAGACGTTGAAG
GCAAAATATTTTGTCGTAACTGAATTGCTAGCACTTAGTGGATTTGAGGG
GAATAAAGAGAAAATKATGTTTGTTTGTGAGAAAAGTGTGTATGATGAAA
CTACAAGGGTATGCATATACATAAATCATCGCTTGAAACCAATTGATATA
GTAATTTGACTGGATATATATAAATTTTTAAAAATATTGTGAGTAATCAT
CACTTGAAGCTAATTGATATAGTTATATATTGACGATCTCAAAATCTTTT
AAACTATTAATTTGCAAGACTTTTTGTGCATGTTTACTTATATTTGAGAG
AGGTTAAATTACCAAACATCCCCTTATTTTCTATGTGCATGAAACAAATC
ATCTCGAACATATAATATTATCATCATGCAACAACAATGTATCAGTCGTT
TTAAATGTTTGGCATGCACATCACGATTTTTAATAAGAAACATACTAGAT
TTATGTTAAGTCCTACTTAGAAATCAATGTGGTATTTGAGATTGCATTTA
TATGATTCTATTTTATTTTAGAGTTTTCTTTCATGCTTTGGGTTTTGCGT
TTGTAGGGTAAAAAGGATGCAAATGGATTGTATGATAAGGCTTTTCCGCA
CTACCACACTTTGGGAGAGATTTATGTGAAAGATCGTGTTGTGGGTGCAA
ATGCTGGTAAAGTTGATGACAAGGAAGAAGTTAGACTTGAATATGTCAAT
GTCAATGAGAATGAATGTGAGGATGAAAGTGGTTATGATGTTGACATGTA
TTTCTTAGTACCAAATACCTTACAACAACAAAATGCAGAAAGTAATACAT
CAAACAGTAGTCATAGGGGGCAAGAGTTGAGGATGAAATAG

Coding sequence (CDS) from alignment at MDC010499.333:3686..6426-

>MDP0000187054 ID=MDP0000187054; Name=MDP0000187054; organism=Malus x domestica; type=CDS; length=834bp; location=Sequence derived from: MDC010499.333:3686..6426- (Malus x domestica
ATGGTTGCATTGTTTCTATACAACCTTGCACATCATCTTAAGAATTGCAC
GGTTAAGCACCACTTTAGAAAGTCTGGTCGAACAATTAGTAAGTATTTCC
ATGAGTGTATTAAAGCAATGATTCAATGCCAAAAGGATTTCTGGCAAACA
CCTGAGCTTATTCCTGAGAACTCAACCGACCCAAAGTGGAAATGGTTTAA
GAATGGCACCTGTTTCATCTGCAAAACGAGAAAGGGACAACAAAAACACT
ATTGGACAACTATTGAGGAGACAATATTGGTTGAGTCATTGCTTGAATTG
CATAGTGACCCGACTTGGCGAGCTAACACCAGTTTCAAGAATGGTTATTT
GGAGAAGATAGAAGCTATGATGGAAGCCAAACTTCCAGGGTGTGGATTAA
AGGCGTTTCCCTACATTCAATCACAAATCAAGACGTTGAAGGCAAAATAT
TTTGTCGTAACTGAATTGCTAGCACTTAGTGGATTTGAGGGGAATAAAGA
GAAAATKATGTTTGTTTGTGAGAAAAGTGTGTATGATGAAACTACAAGGG
GTAAAAAGGATGCAAATGGATTGTATGATAAGGCTTTTCCGCACTACCAC
ACTTTGGGAGAGATTTATGTGAAAGATCGTGTTGTGGGTGCAAATGCTGG
TAAAGTTGATGACAAGGAAGAAGTTAGACTTGAATATGTCAATGTCAATG
AGAATGAATGTGAGGATGAAAGTGGTTATGATGTTGACATGTATTTCTTA
GTACCAAATACCTTACAACAACAAAATGCAGAAAGTAATACATCAAACAG
TAGTCATAGGGGGCAAGAGTTGAGGATGAAATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR024752	Myb/SANT-like_dom