MDP0000187103, MDP0000187103 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000187103
Unique NameMDP0000187103
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1053
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000187103_exon_1MDP0000187103_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000187103MDP0000187103Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000719Protein kinase, catalytic domainPFAMPF00069Pkinasecoord: 6..262
score: 1.4
IPR000719Protein kinase, catalytic domainPROFILEPS50011PROTEIN_KINASE_DOMcoord: 3..262
score: 40
IPR002290Serine/threonine- / dual-specificity protein kinase, catalytic domainSMARTSM00220Serine/Threonine protein kinases, catalyticcoord: 3..262
score: 3.1
IPR008271Serine/threonine-protein kinase, active sitePROSITEPS00108PROTEIN_KINASE_STcoord: 126..138
score
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 2..302
score: 8.4
IPR017441Protein kinase, ATP binding sitePROSITEPS00107PROTEIN_KINASE_ATPcoord: 9..36
score
IPR020635Tyrosine-protein kinase, catalytic domainSMARTSM00219Tyrosine kinase, catalytic domaincoord: 3..262
score: 1.5
NoneNo IPR availableGENE3D1.10.510.10no descriptioncoord: 115..267
score: 2.8
NoneNo IPR availableGENE3D3.30.200.20no descriptioncoord: 3..114
score: 3
NoneNo IPR availablePANTHERPTHR24361FAMILY NOT NAMEDcoord: 2..262
score: 1.8e
NoneNo IPR availablePANTHERPTHR24361:SF58SUBFAMILY NOT NAMEDcoord: 2..262
score: 1.8e
NoneNo IPR availableSEGsegsegcoord: 45..56
score
NoneNo IPR availableSEGsegsegcoord: 67..85
score
NoneNo IPR availableSEGsegsegcoord: 23..33
score
NoneNo IPR availableSEGsegsegcoord: 51..64
score
NoneNo IPR availableSEGsegsegcoord: 11..28
score
NoneNo IPR availableSEGsegsegcoord: 10..27
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000187103 ID=MDP0000187103; Name=MDP0000187103; organism=Malus x domestica; type=mRNA; length=1053bp
ATGGAGTGGATTCGCGGTAAAGAAATCGGCCGTGGAAGTTTCGCAACCAT
CTACGCAGCAAAACCCACCAGCCCATCTTCTCACCTTCCGCCGCTGGTGG
CCGTCAAGTCGTCTGTATCCGGATACTCTGATTCGCTCAAGAACGAGAAG
AAAGTCCTCCACCAAATCGGCTCCTGCCCACAAATCATCCGTTGCTTCGG
CGACGATCACACAGTCGAGAACGGCGAGAAGTTCTTCAACTTGGTTCTGG
AGTACGCCAGCGGCGGCACTCTGGCGGACGAGCTAAAAAGAACCGGCGGA
AGCTTGCCGGAATTTGATGTTCGACGCCACGTAAAGTCGGTGCTCAGAGG
ACTTGAATTCATCCACGCAAAAGGGTTCGTCCACTGTGACTTGAAGCTTC
AGAACGTCCTGGTTTTCGGCAACGGCGCGGCGAAAATCGCCGACTTCGGG
CTTGCGAAGAAAGCAGGGGAATCGGAAAACAAMGTCGAAGTCAGGGGAAC
GCCGCTGTACATGGCGCCGGAATCCGTTAACGATAACGAATACGAGTCCT
GCTCCGACATCTGGGCTTTCGGGTGTTTGGTGGCCGAGATGGCGAGCGGG
AAACCGGTGTGGGATCACAACCCCGCCGTGAACATGTTCAAGATTCTGAT
GAGGATTGGCGGCGATGAGTTGCCGCAAATTCCGGAGGAGTTGAGTGAAG
AAGGCAAAGATTTTGTTTCCAAGTGTTTCGTAAAGGACCCCAAACAGAGA
TGGACGGCTGAGATGCTTCTAAAGCACCCATTTGTTTCCGGCGACGATCA
CACTGTTCTATTGGATGACAAGGCGGAGCTCTCAGCCTCTCCAAGAGGGC
CATTCGATTTTCCGGATTGGGTTTCGATTGCGAGTTCAGAAATTTCTCCA
CAATTTGGGGATTTCTCTGGAAAAAATTTGGATTCCGAGTTCGATTGGTC
GTCGAGAAAGAGTTTCGTTCCGGCGGCGGATCGGTTGCGGCAGCTGGCGA
CGGAGGAGACACCGAATTGGTCGTTCTCTGTAGATTGGGTGACAACCATG
TAA
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protein sequence of MDP0000187103

>MDP0000187103 ID=MDP0000187103; Name=MDP0000187103; organism=Malus x domestica; type=polypeptide; length=350bp
MEWIRGKEIGRGSFATIYAAKPTSPSSHLPPLVAVKSSVSGYSDSLKNEK
KVLHQIGSCPQIIRCFGDDHTVENGEKFFNLVLEYASGGTLADELKRTGG
SLPEFDVRRHVKSVLRGLEFIHAKGFVHCDLKLQNVLVFGNGAAKIADFG
LAKKAGESENXVEVRGTPLYMAPESVNDNEYESCSDIWAFGCLVAEMASG
KPVWDHNPAVNMFKILMRIGGDELPQIPEELSEEGKDFVSKCFVKDPKQR
WTAEMLLKHPFVSGDDHTVLLDDKAELSASPRGPFDFPDWVSIASSEISP
QFGDFSGKNLDSEFDWSSRKSFVPAADRLRQLATEETPNWSFSVDWVTTM
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mRNA from alignment at chr2:16432317..16433369+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000187103 ID=MDP0000187103; Name=MDP0000187103; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr2:16432317..16433369+ (Malus x domestica
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mRNA from alignment at MDC009909.204:5929..6981+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000187103 ID=MDP0000187103; Name=MDP0000187103; organism=Malus x domestica; type=mRNA; length=1053bp; location=Sequence derived from: MDC009909.204:5929..6981+ (Malus x domestica
ATGGAGTGGATTCGCGGTAAAGAAATCGGCCGTGGAAGTTTCGCAACCAT
CTACGCAGCAAAACCCACCAGCCCATCTTCTCACCTTCCGCCGCTGGTGG
CCGTCAAGTCGTCTGTATCCGGATACTCTGATTCGCTCAAGAACGAGAAG
AAAGTCCTCCACCAAATCGGCTCCTGCCCACAAATCATCCGTTGCTTCGG
CGACGATCACACAGTCGAGAACGGCGAGAAGTTCTTCAACTTGGTTCTGG
AGTACGCCAGCGGCGGCACTCTGGCGGACGAGCTAAAAAGAACCGGCGGA
AGCTTGCCGGAATTTGATGTTCGACGCCACGTAAAGTCGGTGCTCAGAGG
ACTTGAATTCATCCACGCAAAAGGGTTCGTCCACTGTGACTTGAAGCTTC
AGAACGTCCTGGTTTTCGGCAACGGCGCGGCGAAAATCGCCGACTTCGGG
CTTGCGAAGAAAGCAGGGGAATCGGAAAACAAMGTCGAAGTCAGGGGAAC
GCCGCTGTACATGGCGCCGGAATCCGTTAACGATAACGAATACGAGTCCT
GCTCCGACATCTGGGCTTTCGGGTGTTTGGTGGCCGAGATGGCGAGCGGG
AAACCGGTGTGGGATCACAACCCCGCCGTGAACATGTTCAAGATTCTGAT
GAGGATTGGCGGCGATGAGTTGCCGCAAATTCCGGAGGAGTTGAGTGAAG
AAGGCAAAGATTTTGTTTCCAAGTGTTTCGTAAAGGACCCCAAACAGAGA
TGGACGGCTGAGATGCTTCTAAAGCACCCATTTGTTTCCGGCGACGATCA
CACTGTTCTATTGGATGACAAGGCGGAGCTCTCAGCCTCTCCAAGAGGGC
CATTCGATTTTCCGGATTGGGTTTCGATTGCGAGTTCAGAAATTTCTCCA
CAATTTGGGGATTTCTCTGGAAAAAATTTGGATTCCGAGTTCGATTGGTC
GTCGAGAAAGAGTTTCGTTCCGGCGGCGGATCGGTTGCGGCAGCTGGCGA
CGGAGGAGACACCGAATTGGTCGTTCTCTGTAGATTGGGTGACAACCATG
TAA
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Coding sequence (CDS) from alignment at MDC009909.204:5929..6981+

>MDP0000187103 ID=MDP0000187103; Name=MDP0000187103; organism=Malus x domestica; type=CDS; length=1053bp; location=Sequence derived from: MDC009909.204:5929..6981+ (Malus x domestica
ATGGAGTGGATTCGCGGTAAAGAAATCGGCCGTGGAAGTTTCGCAACCAT
CTACGCAGCAAAACCCACCAGCCCATCTTCTCACCTTCCGCCGCTGGTGG
CCGTCAAGTCGTCTGTATCCGGATACTCTGATTCGCTCAAGAACGAGAAG
AAAGTCCTCCACCAAATCGGCTCCTGCCCACAAATCATCCGTTGCTTCGG
CGACGATCACACAGTCGAGAACGGCGAGAAGTTCTTCAACTTGGTTCTGG
AGTACGCCAGCGGCGGCACTCTGGCGGACGAGCTAAAAAGAACCGGCGGA
AGCTTGCCGGAATTTGATGTTCGACGCCACGTAAAGTCGGTGCTCAGAGG
ACTTGAATTCATCCACGCAAAAGGGTTCGTCCACTGTGACTTGAAGCTTC
AGAACGTCCTGGTTTTCGGCAACGGCGCGGCGAAAATCGCCGACTTCGGG
CTTGCGAAGAAAGCAGGGGAATCGGAAAACAAMGTCGAAGTCAGGGGAAC
GCCGCTGTACATGGCGCCGGAATCCGTTAACGATAACGAATACGAGTCCT
GCTCCGACATCTGGGCTTTCGGGTGTTTGGTGGCCGAGATGGCGAGCGGG
AAACCGGTGTGGGATCACAACCCCGCCGTGAACATGTTCAAGATTCTGAT
GAGGATTGGCGGCGATGAGTTGCCGCAAATTCCGGAGGAGTTGAGTGAAG
AAGGCAAAGATTTTGTTTCCAAGTGTTTCGTAAAGGACCCCAAACAGAGA
TGGACGGCTGAGATGCTTCTAAAGCACCCATTTGTTTCCGGCGACGATCA
CACTGTTCTATTGGATGACAAGGCGGAGCTCTCAGCCTCTCCAAGAGGGC
CATTCGATTTTCCGGATTGGGTTTCGATTGCGAGTTCAGAAATTTCTCCA
CAATTTGGGGATTTCTCTGGAAAAAATTTGGATTCCGAGTTCGATTGGTC
GTCGAGAAAGAGTTTCGTTCCGGCGGCGGATCGGTTGCGGCAGCTGGCGA
CGGAGGAGACACCGAATTGGTCGTTCTCTGTAGATTGGGTGACAACCATG
TAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR002290Ser/Thr_dual-sp_kinase
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom_sf
IPR017441Protein_kinase_ATP_BS
IPR020635Tyr_kinase_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0004674protein serine/threonine kinase activity
GO:0004713protein tyrosine kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation