MDP0000190363, MDP0000190363 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000190363
Unique NameMDP0000190363
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length2395
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000190363_exon_1MDP0000190363_exon_1Malus x domesticaCDS
MDP0000190363_exon_2MDP0000190363_exon_2Malus x domesticaCDS
MDP0000190363_exon_3MDP0000190363_exon_3Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000190363MDP0000190363Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000719Protein kinase, catalytic domainPFAMPF00069Pkinasecoord: 340..604
score: 1.9
IPR000719Protein kinase, catalytic domainPROFILEPS50011PROTEIN_KINASE_DOMcoord: 338..605
score: 38
IPR002290Serine/threonine- / dual-specificity protein kinase, catalytic domainSMARTSM00220Serine/Threonine protein kinases, catalyticcoord: 338..604
score: 2.1
IPR008271Serine/threonine-protein kinase, active sitePROSITEPS00108PROTEIN_KINASE_STcoord: 458..470
score
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 308..605
score: 2.1
IPR017441Protein kinase, ATP binding sitePROSITEPS00107PROTEIN_KINASE_ATPcoord: 344..367
score
IPR020635Tyrosine-protein kinase, catalytic domainSMARTSM00219Tyrosine kinase, catalytic domaincoord: 338..605
score: 7
NoneNo IPR availableGENE3D1.10.510.10no descriptioncoord: 400..540
score: 5.4
NoneNo IPR availableGENE3D3.30.200.20no descriptioncoord: 320..399
score: 9.1
NoneNo IPR availablePANTHERPTHR24420FAMILY NOT NAMEDcoord: 226..605
score: 1.8e
NoneNo IPR availablePANTHERPTHR24420:SF852SUBFAMILY NOT NAMEDcoord: 226..605
score: 1.8e
NoneNo IPR availableSEGsegsegcoord: 233..246
score: NAcoord: 273..284
score
NoneNo IPR availableSEGsegsegcoord: 42..62
score
NoneNo IPR availableSEGsegsegcoord: 38..56
score
NoneNo IPR availableSEGsegsegcoord: 43..61
score
NoneNo IPR availableSEGsegsegcoord: 8..24
score
NoneNo IPR availableSEGsegsegcoord: 7..26
score
NoneNo IPR availableSEGsegsegcoord: 5..22
score: NAcoord: 45..62
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000190363 ID=MDP0000190363; Name=MDP0000190363; organism=Malus x domestica; type=mRNA; length=2395bp
ATGATTCTCCACATTCTCCACCAAAAGTCTCTGGCTTTCATCACCGTCGT
CAGCGTCCTTACCCTTTCAACCTCCATAGCCGCCATAGCCAAAGCTCAAA
ACTCGAGCTCCTGCATACCCACATGCGGATCGGGAAAATCAGCCAAAACT
GTTCGCTATCCATTTGGATTCTCACCGAGCTGCGCAATCCCATTGAACTG
TTCTGACAAAAACGAGATCACACTCGGCAAATTCAGAGTCCAAAACGTCA
CCCCAAACGGCATCTTCGTCAACCTCCCTGCAAAATGCAACCGTCGGGTC
GAATCCGTGGCCCGACTCTTCAGCTCGAACTTCAGCCCGACTTGGAACAA
CAGCCTTCTCCTCCAGAATTGCTCGGCGCCGCAAAACGGCTGCATCATTC
CGGCCGATTTCGTTCGGAAGCAGTTCAATTTAGAGAGCTGCAGGTCCAGC
GCCGATAACATCAGCTGCCTGTCGCAGCAGCACAATCAGTCGGAGGTTAT
ACGAATTTCGGACTTGACTCGGACTGGGTGCAAGAACTTGTTCGGGTCGT
TTGCGGTTCAGTCGGGTGGGGAGTGGCCTCTCTCGCTGGAGTTCGAGACG
GTGGAGTTGGGATGGTGGGTCGAGGGGCCCTGCGACTGCGATGCGAATGC
CACGTGTACTACGGTGAAGCTCGGCGATGGGATGCCGGAAGGGTACCGAT
GTAGATGCAATGATGGGTTCGACGGCGACGGGTTCAATCTCGGGTGGGGT
TGCCGGAGAGGTTAGTCATCCGGGCATTTTGATTCTTTGGAAATTTTTAC
TAGTCATGGTCCTTGACGAGCGGTGGAAAAGTAGACAATTCCGTTTGGGT
GGGGATTTTGGACTTGGCCAATGACGTGCTACCACGTCACTATTCATGTT
TTTCTATGGGTTTGTTTTGTGAGGTAACCAAACAGTTAATTAATTAAGGG
GAAATGGGGTTAAATTAAATTAAACTGAAATGTGCATAGCATCACAATTT
CAATCCCGGCTTAATTTTGTTCTAATCGTTATTTATACTGGTTTCCGTGC
CTCTAGTTTCCGAGTGCAGTCCATCAAAGTACATGTCTGGTCGCTGTGGG
GGAACAACTAGAGTTGGTGCTCTTATTGGAGGTAAACTTTCTGCTCTCTC
CTTTTCAAATTTACATATGCTCAGGTATGTTACCTCTTTTTCCCCTCTTC
AAATTGTTTCCGCTTCTTCCTTCTCCGTATCTCATTTTTAGACATGATAA
GTCTTAAAGACACGAGTGCGTGAACTGTAAATCCACTGGTGATACAATCC
TTGTTGCATAGCTGAGATATTGATCAAATATGACCGGTACTACTTGATAA
AATTTCATATATTTGGTTATCTTGTGCTTTGTCTAAGTACATGCGTGGCC
TTGCTTTTGTCTTAGGGGTTATTGCTGGAGCTTTCTTAATGGCCGGTCTA
TTTGTTCTCTGTTACTTTGTTCGACGTCGTTCAACTTGCTTGAGAAACCG
AATGAGCGCAAGGCGCCTCCTAAGCGAAGCGGCAGGCAACTCTAATGTTT
CATTATTCCCCTATAAAGAAATAGCGAGAGCCACTAACTGCTTCGCTGAA
AAACAAAGGCTGGGCACAGGGGCTTTTGGTACAGTTTATGCAGGAAAACT
CCACAACGATGAGTGGGTTGCCATAAAGAAGATCAACCGTCGAGACACCA
ATGGCGTTGATCAAGTCATGAATGAGATCAAACTCCTTTCCTCTGTGAGC
CACCCGAATCTGGTGCGCCTCTTAGGTTGCTGCATAGAGGGAGGTGAACA
GATCCTCGTCTATGAATATATGCCTAATGGAACTCTATCTGAACATCTTC
AACGMGAGAGGGGCCAAGGACTTCCGTGGACCATAAGGCTCACCATCGCC
TCTGAAACTGCTAATGCTATAGCTTATCTCCATTCAGAAATGAATCCACC
AATCTATCATAGAGATATCAAATCCACCAATATACTCCTGGATTACAACT
ACAAGTCAAAGGTAGCAGATTTTGGTCTTTCTMGACTTGGGATGACAGAA
TCGTCATACATATCAACGGCTCCACAAGGGACTCCGGGCTATGTGGATCC
TCAATACCATCAAAACTTCCATCTTTCCGATAAAAGTGATGTTTACAGTT
TTGGGGTAGTATTAGTAGAGATTATAACCGCGATGAAGGTGGTTGATTTT
GCTCGACCTCAATGTGAAGTTAACTTGGCTGCACTCGCTATCGATAGGAT
TGGGAAGGGATGCGTGGACGAGATAGTTGATCCCTTTCTTGAGCCAGATA
GGGATGCATGGACTCTTTATTCTGTTAACAAGGTGGCTGAGCTTGCATTT
CGATGCCTTGCTTTTCACAGTGACATGAGGCCTTCTATGACAGAG
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protein sequence of MDP0000190363

>MDP0000190363 ID=MDP0000190363; Name=MDP0000190363; organism=Malus x domestica; type=polypeptide; length=605bp
MILHILHQKSLAFITVVSVLTLSTSIAAIAKAQNSSSCIPTCGSGKSAKT
VRYPFGFSPSCAIPLNCSDKNEITLGKFRVQNVTPNGIFVNLPAKCNRRV
ESVARLFSSNFSPTWNNSLLLQNCSAPQNGCIIPADFVRKQFNLESCRSS
ADNISCLSQQHNQSEVIRISDLTRTGCKNLFGSFAVQSGGEWPLSLEFET
VELGWWVEGPCDCDANATCTTVKLGDGMPEGYRCRCNDGFDGDGFNLGWG
CRRVSECSPSKYMSGRCGGTTRVGALIGGVIAGAFLMAGLFVLCYFVRRR
STCLRNRMSARRLLSEAAGNSNVSLFPYKEIARATNCFAEKQRLGTGAFG
TVYAGKLHNDEWVAIKKINRRDTNGVDQVMNEIKLLSSVSHPNLVRLLGC
CIEGGEQILVYEYMPNGTLSEHLQRERGQGLPWTIRLTIASETANAIAYL
HSEMNPPIYHRDIKSTNILLDYNYKSKVADFGLSXLGMTESSYISTAPQG
TPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFARPQCEVNLA
ALAIDRIGKGCVDEIVDPFLEPDRDAWTLYSVNKVAELAFRCLAFHSDMR
PSMTE
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mRNA from alignment at chr15:21341507..21343901+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000190363 ID=MDP0000190363; Name=MDP0000190363; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr15:21341507..21343901+ (Malus x domestica
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mRNA from alignment at MDC010606.75:9378..11772+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000190363 ID=MDP0000190363; Name=MDP0000190363; organism=Malus x domestica; type=mRNA; length=2395bp; location=Sequence derived from: MDC010606.75:9378..11772+ (Malus x domestica
ATGATTCTCCACATTCTCCACCAAAAGTCTCTGGCTTTCATCACCGTCGT
CAGCGTCCTTACCCTTTCAACCTCCATAGCCGCCATAGCCAAAGCTCAAA
ACTCGAGCTCCTGCATACCCACATGCGGATCGGGAAAATCAGCCAAAACT
GTTCGCTATCCATTTGGATTCTCACCGAGCTGCGCAATCCCATTGAACTG
TTCTGACAAAAACGAGATCACACTCGGCAAATTCAGAGTCCAAAACGTCA
CCCCAAACGGCATCTTCGTCAACCTCCCTGCAAAATGCAACCGTCGGGTC
GAATCCGTGGCCCGACTCTTCAGCTCGAACTTCAGCCCGACTTGGAACAA
CAGCCTTCTCCTCCAGAATTGCTCGGCGCCGCAAAACGGCTGCATCATTC
CGGCCGATTTCGTTCGGAAGCAGTTCAATTTAGAGAGCTGCAGGTCCAGC
GCCGATAACATCAGCTGCCTGTCGCAGCAGCACAATCAGTCGGAGGTTAT
ACGAATTTCGGACTTGACTCGGACTGGGTGCAAGAACTTGTTCGGGTCGT
TTGCGGTTCAGTCGGGTGGGGAGTGGCCTCTCTCGCTGGAGTTCGAGACG
GTGGAGTTGGGATGGTGGGTCGAGGGGCCCTGCGACTGCGATGCGAATGC
CACGTGTACTACGGTGAAGCTCGGCGATGGGATGCCGGAAGGGTACCGAT
GTAGATGCAATGATGGGTTCGACGGCGACGGGTTCAATCTCGGGTGGGGT
TGCCGGAGAGGTTAGTCATCCGGGCATTTTGATTCTTTGGAAATTTTTAC
TAGTCATGGTCCTTGACGAGCGGTGGAAAAGTAGACAATTCCGTTTGGGT
GGGGATTTTGGACTTGGCCAATGACGTGCTACCACGTCACTATTCATGTT
TTTCTATGGGTTTGTTTTGTGAGGTAACCAAACAGTTAATTAATTAAGGG
GAAATGGGGTTAAATTAAATTAAACTGAAATGTGCATAGCATCACAATTT
CAATCCCGGCTTAATTTTGTTCTAATCGTTATTTATACTGGTTTCCGTGC
CTCTAGTTTCCGAGTGCAGTCCATCAAAGTACATGTCTGGTCGCTGTGGG
GGAACAACTAGAGTTGGTGCTCTTATTGGAGGTAAACTTTCTGCTCTCTC
CTTTTCAAATTTACATATGCTCAGGTATGTTACCTCTTTTTCCCCTCTTC
AAATTGTTTCCGCTTCTTCCTTCTCCGTATCTCATTTTTAGACATGATAA
GTCTTAAAGACACGAGTGCGTGAACTGTAAATCCACTGGTGATACAATCC
TTGTTGCATAGCTGAGATATTGATCAAATATGACCGGTACTACTTGATAA
AATTTCATATATTTGGTTATCTTGTGCTTTGTCTAAGTACATGCGTGGCC
TTGCTTTTGTCTTAGGGGTTATTGCTGGAGCTTTCTTAATGGCCGGTCTA
TTTGTTCTCTGTTACTTTGTTCGACGTCGTTCAACTTGCTTGAGAAACCG
AATGAGCGCAAGGCGCCTCCTAAGCGAAGCGGCAGGCAACTCTAATGTTT
CATTATTCCCCTATAAAGAAATAGCGAGAGCCACTAACTGCTTCGCTGAA
AAACAAAGGCTGGGCACAGGGGCTTTTGGTACAGTTTATGCAGGAAAACT
CCACAACGATGAGTGGGTTGCCATAAAGAAGATCAACCGTCGAGACACCA
ATGGCGTTGATCAAGTCATGAATGAGATCAAACTCCTTTCCTCTGTGAGC
CACCCGAATCTGGTGCGCCTCTTAGGTTGCTGCATAGAGGGAGGTGAACA
GATCCTCGTCTATGAATATATGCCTAATGGAACTCTATCTGAACATCTTC
AACGMGAGAGGGGCCAAGGACTTCCGTGGACCATAAGGCTCACCATCGCC
TCTGAAACTGCTAATGCTATAGCTTATCTCCATTCAGAAATGAATCCACC
AATCTATCATAGAGATATCAAATCCACCAATATACTCCTGGATTACAACT
ACAAGTCAAAGGTAGCAGATTTTGGTCTTTCTMGACTTGGGATGACAGAA
TCGTCATACATATCAACGGCTCCACAAGGGACTCCGGGCTATGTGGATCC
TCAATACCATCAAAACTTCCATCTTTCCGATAAAAGTGATGTTTACAGTT
TTGGGGTAGTATTAGTAGAGATTATAACCGCGATGAAGGTGGTTGATTTT
GCTCGACCTCAATGTGAAGTTAACTTGGCTGCACTCGCTATCGATAGGAT
TGGGAAGGGATGCGTGGACGAGATAGTTGATCCCTTTCTTGAGCCAGATA
GGGATGCATGGACTCTTTATTCTGTTAACAAGGTGGCTGAGCTTGCATTT
CGATGCCTTGCTTTTCACAGTGACATGAGGCCTTCTATGACAGAG
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Coding sequence (CDS) from alignment at MDC010606.75:9378..11772+

>MDP0000190363 ID=MDP0000190363; Name=MDP0000190363; organism=Malus x domestica; type=CDS; length=1815bp; location=Sequence derived from: MDC010606.75:9378..11772+ (Malus x domestica
ATGATTCTCCACATTCTCCACCAAAAGTCTCTGGCTTTCATCACCGTCGT
CAGCGTCCTTACCCTTTCAACCTCCATAGCCGCCATAGCCAAAGCTCAAA
ACTCGAGCTCCTGCATACCCACATGCGGATCGGGAAAATCAGCCAAAACT
GTTCGCTATCCATTTGGATTCTCACCGAGCTGCGCAATCCCATTGAACTG
TTCTGACAAAAACGAGATCACACTCGGCAAATTCAGAGTCCAAAACGTCA
CCCCAAACGGCATCTTCGTCAACCTCCCTGCAAAATGCAACCGTCGGGTC
GAATCCGTGGCCCGACTCTTCAGCTCGAACTTCAGCCCGACTTGGAACAA
CAGCCTTCTCCTCCAGAATTGCTCGGCGCCGCAAAACGGCTGCATCATTC
CGGCCGATTTCGTTCGGAAGCAGTTCAATTTAGAGAGCTGCAGGTCCAGC
GCCGATAACATCAGCTGCCTGTCGCAGCAGCACAATCAGTCGGAGGTTAT
ACGAATTTCGGACTTGACTCGGACTGGGTGCAAGAACTTGTTCGGGTCGT
TTGCGGTTCAGTCGGGTGGGGAGTGGCCTCTCTCGCTGGAGTTCGAGACG
GTGGAGTTGGGATGGTGGGTCGAGGGGCCCTGCGACTGCGATGCGAATGC
CACGTGTACTACGGTGAAGCTCGGCGATGGGATGCCGGAAGGGTACCGAT
GTAGATGCAATGATGGGTTCGACGGCGACGGGTTCAATCTCGGGTGGGGT
TGCCGGAGAGTTTCCGAGTGCAGTCCATCAAAGTACATGTCTGGTCGCTG
TGGGGGAACAACTAGAGTTGGTGCTCTTATTGGAGGGGTTATTGCTGGAG
CTTTCTTAATGGCCGGTCTATTTGTTCTCTGTTACTTTGTTCGACGTCGT
TCAACTTGCTTGAGAAACCGAATGAGCGCAAGGCGCCTCCTAAGCGAAGC
GGCAGGCAACTCTAATGTTTCATTATTCCCCTATAAAGAAATAGCGAGAG
CCACTAACTGCTTCGCTGAAAAACAAAGGCTGGGCACAGGGGCTTTTGGT
ACAGTTTATGCAGGAAAACTCCACAACGATGAGTGGGTTGCCATAAAGAA
GATCAACCGTCGAGACACCAATGGCGTTGATCAAGTCATGAATGAGATCA
AACTCCTTTCCTCTGTGAGCCACCCGAATCTGGTGCGCCTCTTAGGTTGC
TGCATAGAGGGAGGTGAACAGATCCTCGTCTATGAATATATGCCTAATGG
AACTCTATCTGAACATCTTCAACGMGAGAGGGGCCAAGGACTTCCGTGGA
CCATAAGGCTCACCATCGCCTCTGAAACTGCTAATGCTATAGCTTATCTC
CATTCAGAAATGAATCCACCAATCTATCATAGAGATATCAAATCCACCAA
TATACTCCTGGATTACAACTACAAGTCAAAGGTAGCAGATTTTGGTCTTT
CTMGACTTGGGATGACAGAATCGTCATACATATCAACGGCTCCACAAGGG
ACTCCGGGCTATGTGGATCCTCAATACCATCAAAACTTCCATCTTTCCGA
TAAAAGTGATGTTTACAGTTTTGGGGTAGTATTAGTAGAGATTATAACCG
CGATGAAGGTGGTTGATTTTGCTCGACCTCAATGTGAAGTTAACTTGGCT
GCACTCGCTATCGATAGGATTGGGAAGGGATGCGTGGACGAGATAGTTGA
TCCCTTTCTTGAGCCAGATAGGGATGCATGGACTCTTTATTCTGTTAACA
AGGTGGCTGAGCTTGCATTTCGATGCCTTGCTTTTCACAGTGACATGAGG
CCTTCTATGACAGAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR002290Ser/Thr_dual-sp_kinase
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom_sf
IPR017441Protein_kinase_ATP_BS
IPR020635Tyr_kinase_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0004674protein serine/threonine kinase activity
GO:0004713protein tyrosine kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation