MDP0000190407, MDP0000190407 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000190407
Unique Name	MDP0000190407
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	2550

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr11	chromosome	chr11:30588642..30591191 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC009872.262	contig	MDC009872.262:10630..13179 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000190407_exon_1	MDP0000190407_exon_1	Malus x domestica	CDS
MDP0000190407_exon_2	MDP0000190407_exon_2	Malus x domestica	CDS
MDP0000190407_exon_3	MDP0000190407_exon_3	Malus x domestica	CDS
MDP0000190407_exon_4	MDP0000190407_exon_4	Malus x domestica	CDS
MDP0000190407_exon_5	MDP0000190407_exon_5	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000190407	MDP0000190407	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain, cyclin-like	PFAM	PF00646	F-box	coord: 86..124 score: 4.7
IPR001810	F-box domain, cyclin-like	SMART	SM00256	A Receptor for Ubiquitination Targets	coord: 90..130 score: 1.1
IPR001810	F-box domain, cyclin-like	PROFILE	PS50181	FBOX	coord: 84..134 score: 10
IPR001810	F-box domain, cyclin-like	SUPERFAMILY	81383	F-box domain	coord: 82..127 score: 2.2
IPR006566	FBD	PFAM	PF08387	FBD	coord: 467..514 score: 8
None	No IPR available	COIL	coil	coiled-coil	coord: 1..24 score
None	No IPR available	GENE3D	3.80.10.10	no description	coord: 227..446 score: 2.8
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 228..448 score: 4
None	No IPR available	SEG	seg	seg	coord: 54..68 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr11:30588642..30591191+
mRNA from alignment at MDC009872.262:10630..13179+
coding sequence from alignment at MDC009872.262:10630..13179+

mRNA sequence

>MDP0000190407 ID=MDP0000190407; Name=MDP0000190407; organism=Malus x domestica; type=mRNA; length=2550bp
ATGGCCAAAGCCCAAGAAGAAAACCGCAATGAAAAGGCAAGAGAGGCCCA
AACCAGAGCTAGCATGGAAACACAAGGTCGCAGAAAACGGGTTCAGATTT
GTTCAGAGGAAAGATTGGAAGGTTCATCCTTTAAACTTTAAATTTGGAAG
GTTGATTTTCTTGGATTTTGCCACCGTTTCTCAGCAACCAAACACCATCT
TTCACTACTCGTTGCCACTAGTGTTTCACCGGGTCCATCCCTGAACGTTT
CAGGTATGCTTTTGCTTCGTGAACTTGTTGATTTCCTTACCATTTGTTTG
GTTACCGAGAAAACTGAGAAAGATTGATAGTATGGCAAATTCAAGTCTTG
CATGCCCTTTGAGTTGTTTATCTGCTATAAAAATGCAACTAGTTATAGCT
TCAATATTGTTTCCGGAAATTGCTACATTCAATTCATGATCTCTGTCCAA
GGCGGATTGTCTAGGGTTTATGTTTCCGCCGAAATAATTATCTCTAGAAA
TTTGTTGCATTCATCTTTCTTATTGTATCAATTGATCAGATTTAGAAATT
AGAATTTCACTTTTCGTTGAAATTTTCAGGCCCATGCTCTCCATGGGTAG
AGATAAGATTAGTGAATTGCCGGATGAAGTTCTTTGTCACATACTCTCCT
TCGTTCCAGCAAAATATGTTGTGAGGACCCGTGTTCTGTCTACTAGATGG
AAGAACATATGGGCTTCTGTCCCCAGTCTTGACTTCGAATTTGAAAACAT
ACCTATTGTATGGAGAGACGAAAATCAGCCTGACCCCGATGGTTTCAGAT
GGGAAGCCGAAGATCTGTCTGACCATGTTGGATTTTTGACGTTTGTTGAT
CGTGTTCTCTACTTTCGTGGCTTATCAGATATTAAAAAATTACGTCTTCA
TTGTTACTGTCGTGTTGAGGATGCCTCTCGTATTGATGGCTGGATTCGCT
CTGCCTTTAGCCATAATGTTGTTGAACTTGATCTCTGTGTTCAAGCACAT
TATGATGAGTATATTGAGGAACCGCCTTTGGAGTTGCCTCGATGCGTATT
CACTTGCAAAACGCTAGTGGTTTTGAAACTGATGTCAAATTTTATTACCT
ATGCTCCCCCTACATCAGGCTGTTGTTTCCCAAGTCTGAAGTCCCTTGAT
GTCAGAGTTGATTATCCTGAAGATGACTCAATGGAAAAACTTTTTTCATG
CTGCCCTGTACTTGAAGATTTATCTATAAAGGCAACTGTTCCAGATCATA
ATCGTCAGAATTTTAAGGTCTCAGCGCCTGAGCTCAAGAGATTAAGAATG
ACTTTCTTCAGTTTTATCAATGGTGCTGAAGATTTTGAGTACAATATATC
TGTGAATGCTCCAAAGCTTGAATACCTTGACATTAAGCAGGACTATTTGT
CACATTATACATTTGAGAATCTAAAATCCCTGGCCAAAGGCAGTGTTGAT
CTCTATTGCCATATTGGGAAAACCCAGGTTGGCTTCTCTGAACGAGCAAC
TGCTCTTCTGGAGGCATTTTCCAACGTTAAATATCTGTTGATTTCAGCTC
ATTATGTCGAGGTTAGTCTACACCATAACTCGTTTCTTTTACACTATGTT
TGGTAAAGAGGAAAAATAGGAAGGAGGGCAGGGGATCTTTAAATGAAGAA
GGAAGTATATTGTTTTCCTTCATTTGTAAAACATATAGTATTTTGGTTTT
GTGTTAAGAAAAGAAATAATAAAATTCTCGTCTTGTTCCTATTCTTTATT
TTATTTTATTTTATTTTTTCTGAATCAGATCTTTATGTACGAAACAAATG
AGGAAAAGTTTATGCAAATATTTCCTTGCCCTATCCTTAACTAAATGAAG
CAAATACATGCCGCCTTTTCCCATTCCTTTTTCCCTATACATCATTCTTT
CGTTATACCACAAGTAGTGTTTGTAACTGAAACCTTGTTACATTTTGACA
ATTTATAWTTTGAAACAATATACGCATTAGTAAATGTTTCATTTATGCAT
GGTTTATGGAATGTTTGATGATTTGGGCAAAATAAATGAGCGATTAAGTT
ATGCATTGTTTGATCAACTTTTATGTATTTTGTGAAGGATGGTTGTCTGC
CTGCTTTCAATCATTTGACCGAATTGAAGTTGGTTCTTTATGATTGCTAT
CACTGGGATTTGCTAACAGAGTTGCTCAAGAAATCACCAAATTTGCAATC
TCTTGTCATCGAACATAAAGAAGTAAGAAGTATTTCCACTCATACTAAGT
CTTAACAACATGCTGCTCTTTACCATTCTCATCATTTGTACTTTTCAGGA
CAAGGAATGTGTTGAGGAGCGTGGAGATGTCTTAAATTCGGCAGATAGAT
GGCGTACACCAGAGTCTGTGCCCATTTGTCTGATATCGCACCTGAAGACC
ATCACTATAAGGGGCTTAAATCTATACCCGCATGTGCAGAAAGTGCTAAA
ATATTTTATGAAGAACGGTAAAGTTTTGGACAAGATGACYATCTATGCTA
AGAATGGGGCTTACAAATATTTCATACCTAGAAGGGCTCCTAGGACTTGA

protein sequence of MDP0000190407

>MDP0000190407 ID=MDP0000190407; Name=MDP0000190407; organism=Malus x domestica; type=polypeptide; length=532bp
MAKAQEENRNEKAREAQTRASMETQGRRKRVQICSEERLEATKHHLSLLV
ATSVSPGPSLNVSDLEIRISLFVEIFRPMLSMGRDKISELPDEVLCHILS
FVPAKYVVRTRVLSTRWKNIWASVPSLDFEFENIPIVWRDENQPDPDGFR
WEAEDLSDHVGFLTFVDRVLYFRGLSDIKKLRLHCYCRVEDASRIDGWIR
SAFSHNVVELDLCVQAHYDEYIEEPPLELPRCVFTCKTLVVLKLMSNFIT
YAPPTSGCCFPSLKSLDVRVDYPEDDSMEKLFSCCPVLEDLSIKATVPDH
NRQNFKVSAPELKRLRMTFFSFINGAEDFEYNISVNAPKLEYLDIKQDYL
SHYTFENLKSLAKGSVDLYCHIGKTQVGFSERATALLEAFSNVKYLLISA
HYVEDGCLPAFNHLTELKLVLYDCYHWDLLTELLKKSPNLQSLVIEHKED
KECVEERGDVLNSADRWRTPESVPICLISHLKTITIRGLNLYPHVQKVLK
YFMKNGKVLDKMTIYAKNGAYKYFIPRRAPRT

mRNA from alignment at chr11:30588642..30591191+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000190407 ID=MDP0000190407; Name=MDP0000190407; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr11:30588642..30591191+ (Malus x domestica

mRNA from alignment at MDC009872.262:10630..13179+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000190407 ID=MDP0000190407; Name=MDP0000190407; organism=Malus x domestica; type=mRNA; length=2550bp; location=Sequence derived from: MDC009872.262:10630..13179+ (Malus x domestica
ATGGCCAAAGCCCAAGAAGAAAACCGCAATGAAAAGGCAAGAGAGGCCCA
AACCAGAGCTAGCATGGAAACACAAGGTCGCAGAAAACGGGTTCAGATTT
GTTCAGAGGAAAGATTGGAAGGTTCATCCTTTAAACTTTAAATTTGGAAG
GTTGATTTTCTTGGATTTTGCCACCGTTTCTCAGCAACCAAACACCATCT
TTCACTACTCGTTGCCACTAGTGTTTCACCGGGTCCATCCCTGAACGTTT
CAGGTATGCTTTTGCTTCGTGAACTTGTTGATTTCCTTACCATTTGTTTG
GTTACCGAGAAAACTGAGAAAGATTGATAGTATGGCAAATTCAAGTCTTG
CATGCCCTTTGAGTTGTTTATCTGCTATAAAAATGCAACTAGTTATAGCT
TCAATATTGTTTCCGGAAATTGCTACATTCAATTCATGATCTCTGTCCAA
GGCGGATTGTCTAGGGTTTATGTTTCCGCCGAAATAATTATCTCTAGAAA
TTTGTTGCATTCATCTTTCTTATTGTATCAATTGATCAGATTTAGAAATT
AGAATTTCACTTTTCGTTGAAATTTTCAGGCCCATGCTCTCCATGGGTAG
AGATAAGATTAGTGAATTGCCGGATGAAGTTCTTTGTCACATACTCTCCT
TCGTTCCAGCAAAATATGTTGTGAGGACCCGTGTTCTGTCTACTAGATGG
AAGAACATATGGGCTTCTGTCCCCAGTCTTGACTTCGAATTTGAAAACAT
ACCTATTGTATGGAGAGACGAAAATCAGCCTGACCCCGATGGTTTCAGAT
GGGAAGCCGAAGATCTGTCTGACCATGTTGGATTTTTGACGTTTGTTGAT
CGTGTTCTCTACTTTCGTGGCTTATCAGATATTAAAAAATTACGTCTTCA
TTGTTACTGTCGTGTTGAGGATGCCTCTCGTATTGATGGCTGGATTCGCT
CTGCCTTTAGCCATAATGTTGTTGAACTTGATCTCTGTGTTCAAGCACAT
TATGATGAGTATATTGAGGAACCGCCTTTGGAGTTGCCTCGATGCGTATT
CACTTGCAAAACGCTAGTGGTTTTGAAACTGATGTCAAATTTTATTACCT
ATGCTCCCCCTACATCAGGCTGTTGTTTCCCAAGTCTGAAGTCCCTTGAT
GTCAGAGTTGATTATCCTGAAGATGACTCAATGGAAAAACTTTTTTCATG
CTGCCCTGTACTTGAAGATTTATCTATAAAGGCAACTGTTCCAGATCATA
ATCGTCAGAATTTTAAGGTCTCAGCGCCTGAGCTCAAGAGATTAAGAATG
ACTTTCTTCAGTTTTATCAATGGTGCTGAAGATTTTGAGTACAATATATC
TGTGAATGCTCCAAAGCTTGAATACCTTGACATTAAGCAGGACTATTTGT
CACATTATACATTTGAGAATCTAAAATCCCTGGCCAAAGGCAGTGTTGAT
CTCTATTGCCATATTGGGAAAACCCAGGTTGGCTTCTCTGAACGAGCAAC
TGCTCTTCTGGAGGCATTTTCCAACGTTAAATATCTGTTGATTTCAGCTC
ATTATGTCGAGGTTAGTCTACACCATAACTCGTTTCTTTTACACTATGTT
TGGTAAAGAGGAAAAATAGGAAGGAGGGCAGGGGATCTTTAAATGAAGAA
GGAAGTATATTGTTTTCCTTCATTTGTAAAACATATAGTATTTTGGTTTT
GTGTTAAGAAAAGAAATAATAAAATTCTCGTCTTGTTCCTATTCTTTATT
TTATTTTATTTTATTTTTTCTGAATCAGATCTTTATGTACGAAACAAATG
AGGAAAAGTTTATGCAAATATTTCCTTGCCCTATCCTTAACTAAATGAAG
CAAATACATGCCGCCTTTTCCCATTCCTTTTTCCCTATACATCATTCTTT
CGTTATACCACAAGTAGTGTTTGTAACTGAAACCTTGTTACATTTTGACA
ATTTATAWTTTGAAACAATATACGCATTAGTAAATGTTTCATTTATGCAT
GGTTTATGGAATGTTTGATGATTTGGGCAAAATAAATGAGCGATTAAGTT
ATGCATTGTTTGATCAACTTTTATGTATTTTGTGAAGGATGGTTGTCTGC
CTGCTTTCAATCATTTGACCGAATTGAAGTTGGTTCTTTATGATTGCTAT
CACTGGGATTTGCTAACAGAGTTGCTCAAGAAATCACCAAATTTGCAATC
TCTTGTCATCGAACATAAAGAAGTAAGAAGTATTTCCACTCATACTAAGT
CTTAACAACATGCTGCTCTTTACCATTCTCATCATTTGTACTTTTCAGGA
CAAGGAATGTGTTGAGGAGCGTGGAGATGTCTTAAATTCGGCAGATAGAT
GGCGTACACCAGAGTCTGTGCCCATTTGTCTGATATCGCACCTGAAGACC
ATCACTATAAGGGGCTTAAATCTATACCCGCATGTGCAGAAAGTGCTAAA
ATATTTTATGAAGAACGGTAAAGTTTTGGACAAGATGACYATCTATGCTA
AGAATGGGGCTTACAAATATTTCATACCTAGAAGGGCTCCTAGGACTTGA

Coding sequence (CDS) from alignment at MDC009872.262:10630..13179+

>MDP0000190407 ID=MDP0000190407; Name=MDP0000190407; organism=Malus x domestica; type=CDS; length=1599bp; location=Sequence derived from: MDC009872.262:10630..13179+ (Malus x domestica
ATGGCCAAAGCCCAAGAAGAAAACCGCAATGAAAAGGCAAGAGAGGCCCA
AACCAGAGCTAGCATGGAAACACAAGGTCGCAGAAAACGGGTTCAGATTT
GTTCAGAGGAAAGATTGGAAGCAACCAAACACCATCTTTCACTACTCGTT
GCCACTAGTGTTTCACCGGGTCCATCCCTGAACGTTTCAGATTTAGAAAT
TAGAATTTCACTTTTCGTTGAAATTTTCAGGCCCATGCTCTCCATGGGTA
GAGATAAGATTAGTGAATTGCCGGATGAAGTTCTTTGTCACATACTCTCC
TTCGTTCCAGCAAAATATGTTGTGAGGACCCGTGTTCTGTCTACTAGATG
GAAGAACATATGGGCTTCTGTCCCCAGTCTTGACTTCGAATTTGAAAACA
TACCTATTGTATGGAGAGACGAAAATCAGCCTGACCCCGATGGTTTCAGA
TGGGAAGCCGAAGATCTGTCTGACCATGTTGGATTTTTGACGTTTGTTGA
TCGTGTTCTCTACTTTCGTGGCTTATCAGATATTAAAAAATTACGTCTTC
ATTGTTACTGTCGTGTTGAGGATGCCTCTCGTATTGATGGCTGGATTCGC
TCTGCCTTTAGCCATAATGTTGTTGAACTTGATCTCTGTGTTCAAGCACA
TTATGATGAGTATATTGAGGAACCGCCTTTGGAGTTGCCTCGATGCGTAT
TCACTTGCAAAACGCTAGTGGTTTTGAAACTGATGTCAAATTTTATTACC
TATGCTCCCCCTACATCAGGCTGTTGTTTCCCAAGTCTGAAGTCCCTTGA
TGTCAGAGTTGATTATCCTGAAGATGACTCAATGGAAAAACTTTTTTCAT
GCTGCCCTGTACTTGAAGATTTATCTATAAAGGCAACTGTTCCAGATCAT
AATCGTCAGAATTTTAAGGTCTCAGCGCCTGAGCTCAAGAGATTAAGAAT
GACTTTCTTCAGTTTTATCAATGGTGCTGAAGATTTTGAGTACAATATAT
CTGTGAATGCTCCAAAGCTTGAATACCTTGACATTAAGCAGGACTATTTG
TCACATTATACATTTGAGAATCTAAAATCCCTGGCCAAAGGCAGTGTTGA
TCTCTATTGCCATATTGGGAAAACCCAGGTTGGCTTCTCTGAACGAGCAA
CTGCTCTTCTGGAGGCATTTTCCAACGTTAAATATCTGTTGATTTCAGCT
CATTATGTCGAGGATGGTTGTCTGCCTGCTTTCAATCATTTGACCGAATT
GAAGTTGGTTCTTTATGATTGCTATCACTGGGATTTGCTAACAGAGTTGC
TCAAGAAATCACCAAATTTGCAATCTCTTGTCATCGAACATAAAGAAGAC
AAGGAATGTGTTGAGGAGCGTGGAGATGTCTTAAATTCGGCAGATAGATG
GCGTACACCAGAGTCTGTGCCCATTTGTCTGATATCGCACCTGAAGACCA
TCACTATAAGGGGCTTAAATCTATACCCGCATGTGCAGAAAGTGCTAAAA
TATTTTATGAAGAACGGTAAAGTTTTGGACAAGATGACYATCTATGCTAA
GAATGGGGCTTACAAATATTTCATACCTAGAAGGGCTCCTAGGACTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR006566	FBD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding