MDP0000204470, MDP0000204470 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000204470
Unique Name	MDP0000204470
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	4104

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr16	chromosome	chr16:14636918..14641021 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC013556.567	contig	MDC013556.567:300..4403 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.0	2012-04-02

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000204470_exon_1	MDP0000204470_exon_1	Malus x domestica	CDS
MDP0000204470_exon_2	MDP0000204470_exon_2	Malus x domestica	CDS
MDP0000204470_exon_3	MDP0000204470_exon_3	Malus x domestica	CDS
MDP0000204470_exon_4	MDP0000204470_exon_4	Malus x domestica	CDS
MDP0000204470_exon_5	MDP0000204470_exon_5	Malus x domestica	CDS
MDP0000204470_exon_6	MDP0000204470_exon_6	Malus x domestica	CDS
MDP0000204470_exon_7	MDP0000204470_exon_7	Malus x domestica	CDS
MDP0000204470_exon_8	MDP0000204470_exon_8	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000204470	MDP0000204470	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000907	Lipoxygenase	PANTHER	PTHR11771	FAMILY NOT NAMED	coord: 16.
IPR001024	Lipoxygenase, LH2	GENE3D	2.60.60.20	no description	coord: 5..117 score: 2.1
IPR001024	Lipoxygenase, LH2	PFAM	PF01477	PLAT	coord: 5..95 score: 3.6
IPR001024	Lipoxygenase, LH2	SMART	SM00308	Lipoxygenase homology 2 (beta barrel) domain	coord: 1..97 score: 3.4
IPR001024	Lipoxygenase, LH2	PROFILE	PS50095	PLAT	coord: 1..96 score: 25
IPR001246	Lipoxygenase, plant	PRINTS	PR00468	PLTLPOXGNASE	coord: 66..84 score: 8.4e-94coord: 92..113 score: 8.4e-94coord: 131..147 score: 8.4e-94coord: 164..183 score: 8.4e-94coord: 233..254 score: 8.4e-94coord: 282..298 score: 8.4e-94coord: 321..340 score: 8.4e-94coord: 387..411 score: 8.4e-94coord: 712..726 score: 8.4
IPR008976	Lipase/lipooxygenase, PLAT/LH2	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 6..100 score: 1.2
IPR013819	Lipoxygenase, C-terminal	PRINTS	PR00087	LIPOXYGENASE	coord: 437..454 score: 5.9e-24coord: 455..472 score: 5.9e-24coord: 475..495 score: 5.9
IPR013819	Lipoxygenase, C-terminal	PFAM	PF00305	Lipoxygenase	coord: 106.
IPR013819	Lipoxygenase, C-terminal	PROFILE	PS51393	LIPOXYGENASE_3	coord: 99..804 score: 310
IPR013819	Lipoxygenase, C-terminal	SUPERFAMILY	48484	Lipoxigenase	coord: 101..804 score: 3.9e
IPR020833	Lipoxygenase, iron binding site	PROSITE	PS00711	LIPOXYGENASE_1	coord: 455..469 score
IPR020834	Lipoxygenase, conserved site	PROSITE	PS00081	LIPOXYGENASE_2	coord: 482..492 score
None	No IPR available	GENE3D	1.20.245.10	no description	coord: 454..804 score: 3.4e
None	No IPR available	GENE3D	3.10.450.60	no description	coord: 315..451 score: 2
None	No IPR available	GENE3D	4.10.372.10	no description	coord: 214..295 score: 1.3
None	No IPR available	GENE3D	4.10.375.10	no description	coord: 119..213 score: 6.4
None	No IPR available	PANTHER	PTHR11771:SF2	LIPOXYGENASE	coord: 16.
None	No IPR available	SEG	seg	seg	coord: 8..41 score
None	No IPR available	SEG	seg	seg	coord: 53..66 score
None	No IPR available	SEG	seg	seg	coord: 57..68 score
None	No IPR available	SEG	seg	seg	coord: 1..20 score
None	No IPR available	SEG	seg	seg	coord: 8..17 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:14636918..14641021+
mRNA from alignment at MDC013556.567:300..4403+
coding sequence from alignment at MDC013556.567:300..4403+

mRNA sequence

>MDP0000204470 ID=MDP0000204470; Name=MDP0000204470; organism=Malus x domestica; type=mRNA; length=4104bp
AATGGATTGAAATCGAGAGGGAAGCTTGGAGAGGTAGCTTACTTGGAGAA
ATGGGTTACAACGACTACATCTTTGTCGGCCGGAGAAGCTAGTTTCTCCA
TTTCCTTGGATTGGGATGAGTCTCATGGTGTTCCCGGGGCATTGTTGATC
AGAAACCACCACCATAGCCAATTCTACCTCAAGACAATAACATTAGAAGA
CGTTCCTGGGCACGGTCAACTCCATTTTGTCTGCAATTCTTGGGTATACC
CAGCACATCGTTACAAGTACAATAGAATATTTTTCCCCAACAAGGTACTG
GTTAATTAACATAATGCCAAGTCTAACACCTAGTTTGGGAGTGAGGTGCT
TAAAAAAAAACACCTATGAAAAAAAACTATTAGGGTTTTAGATGTTTGTT
AAACTGAAAAAAAATGGCTTATTTTGGAARCTGTGTGAGAATAAGCTGAA
ATCAAAGGAAAAAGCTGAAGCTGCTATTTGTAGCTTTGGAAAACTGGCTT
TTTTTTCAAAGCACACGGGGTTACAGTGCTCCTTTAATGAAAAGACCCAC
TATCAGACTGCTTTTTTTTCCAAAAGCACTTTTACAAAAAAGTTTACCAA
ACGCTTTGCTGATTTATTTCACAGCCGCTTATTCTCACAGCACAGCCGCT
TATTCTCACAGTAGTTTTTTTTCAAAGTACAGCAATACCAAACCAGCCCT
CCATCAGGGAGAGACAGTTTTCACTAGTTTTTTTTTTCTTTTTATAATTT
TTATTTAAGAAAGAAGAAATCTGGAATCTTGTAGCTCATGCAGCATGCTT
TGTTATTCTTTGATTAAAATAACAAGTAAATAAAGGTTTAGTGACTTGAT
CAATTGGTTTTAGCATCTGATCTTATCCGAACCATGTGGTCAGATTCTGC
AATGATCGATCCTTTTAATCTCAATAGTATGGAAAAATCATAATCCATTA
CTTTTCCAGCTGGATTAGCACTCGCACWTAAAAAAATCATTTTATATTAT
GTTTGATTTAATTTTTTCTAGTTTCATTAAATCTTTTGGTATTTTGACAA
ATATAAGATACAACATTAGTTACATTCAGTGGCTTTTTTKGTGGAACACA
ATTCAACAATTTTCAAAAGTTTCGATAAATTGGTTTTTCTCTAATTTATT
RAAAGAGAAATGAKWTATTTATTTTTGTTCATTTTTCTCCTATGATTCAC
CAATCAAATAAGAGTGCGCAAGAAAAAGAAAAAAGACGCTTGGCRCCGGA
ATCACTTCCCCTGCTGAAAWGCAGAAATGAAAYTGAAACGCAGAAATGAA
ACTGAAATGCTATAATTTTTGTTAAGGTACTTACGAGACTGCACTGCCCT
GACTGAAAACTTGATTTTTTGTTTAGGCCTACCTGCCATCTGAAACACCT
GAGCTACTACACCCTTACAGGGAAGATGAACTYGTTAATCTCCGAGGGAG
TGGATCAGGCGAACWAAAGGAGTGGGACAGAGTCTATGACTATGCTTATT
ACAATGATTTAGGGAGTCCAGACAAGGGTCCAGAATATGCCCGCCCTGTA
CTTGGTGGGTCGAACGAGTATCCATATCCAAGAAGAGGAAGAACTGGTCG
AGAACCAACTAAAACCGGTTCGTAACCTAAATGGCTCATTTTRCTAATCA
AGTCGTGACTAAGTTAAAATATGGCGACAACACGTACAGCATGAAGCATT
CCTTACGGTTCTATCTATGACCAATTTTCTCTTATGCTTTGTACAGACCC
CAATTCCGAGAGCAGACTGCCGCTTCTAAGTCTAGAYATTTACGTTCCGA
AAGACGAGCGGTTTGGCCACGTGAAGTTTTCAGATTTTCTTGCCTATGGC
CTGAAATCCCTGGTTCAAATATTGCTTCCAGAACTTAAGTCTTTGTGTGA
TAAAACTATCAACGAGTTTGACACCTTTGAGGATGTACTTAATCTCTATG
ACGGAGGTATCAAGCTACCAAATGGACCTACTCTCAAGAAAATACGGGAG
TGCATCCCTTGGGAGCTGCTTAAGGAACTGATTCGCTCAGATGGCGAGCG
ATTTCTCAAGTTTCCAATGCCTGATGTGATTAAAAGTACATAAAGATATT
TTTTCCCCTGTGACATGGTTTTAGATATGCTACATTCCTATATTGTTGAA
CATAAATCGTATTCAACTATGAATTTTTCCTGATATAATTGCAGGAGATA
GGTCTGCATGGAGGACAGACGAAGAGTTTGCACGAGAAATGCTAGCAGGG
GTGAACCCTGTTAACATCACCCGCCTCCAAGTAAAATATACAATTTTCCA
TGGTTCATATTACAATTATAGTGGCATGGATTTGTTCTAAGTTGTCCAAA
TAATCACCAAAATTTTAACTACAGGAGTTTCCCCCAGTTAGCAAGCTAGA
CCCAAAAGTGTACGGGAATCAGAACAGTTCGATAAGAGAAGAGCACATTG
CAAGCAACATGAATGGCCTCACGGTTAATGAGGTACAAATGATGCTTCAT
TTGTTTCCAGTATATATTTTATACGATTATAGTCTGTGTTTTTAAATCTA
TGTACTGAAATAATCATTTTTGTCCCATTTTGCGCAGGCAATTGAAAGTA
ACAGGCTKTTCATATTAGATCATCATGATGCATTAMTGAYATACCTGAGG
CGAATAAACTCTACGCACACAAAGACGTATGCCACCAGAACTCTCCTCTT
GCTCCAAGAAGACGGGACATTGAAGCCTTTGGCAATTGAGTTGAGCTTAC
CACATCCACAAGGGGACCGTCATGGTTGTGTCAGTACAGTCTTCAATCCA
CCAGGACAAGGCAAAAAAGGCRTCGAGGAGTCGGTGTGGCAGCTTGCGAA
AGCTTATGCTGCTGTAAATGATTCTGGATATCATCAGCTTATCAGCCACT
GGTACGATGTCTAACATAGAAAGCGACATATTTTAYCATCAGGTAGCAGT
TTGGTTCTAGTTTACATGCTAATAATTATTATTTGCAGGTTAAACACACA
TGCTGTGATAGAGCCATTTGTGATTGCAACACATAGACAGTTGAGTGAGC
TTCACCCGATACATAAGCTTTTGCATCCGCACTTCCGGGACACAATGAAC
ATAAATGCCCTGGCCAGGCAAATCCTCATCAATGCTGATGGGGTACTTGA
GAAAACAGTCTTCCCAGGTCGATTCTCCATGGAAATGTCAGCCGTTATTT
ATAAGAGCTGGGTATTCACCGACCAGGCATTACCTGCTGACTTATGCAAG
AGGTAAGCCAGAAAGCCTAAATTGAAAATAATAAGATTTGAACTTCCATC
AAACTGAATATCATTTCGCTTCTGGTCTATTTCAGAGGAATGGCAGTTCT
AGATAAGACCTGTCCTCATGGCCTCAGACTTCTGATTGAAGATTACCCAT
TTGCTGTTGATGGGCTAGAAATCTGGTCGGCGATTCAAACTTGGGTTGAT
GAATACTGCTGTTTGTACTACGAATCAGATGATGCGGTCCAAGTTGATTC
TGAACTCCAGGACTGGTGGACAGAGCTTCGCAATGTAGGCCACGGTGACA
AGAAGAATGAACCATGGTGGCCTAAGATGCAAACAAGAGATGAACTTATT
GAATCATGTACCATAATTATATGGGTGGCTTCTGCCCTCCATGCAGCTGT
CAATTTCGGGCAATACTCTTATGCTGGTTACCTCCCTAACCGCCCAACTG
TAAGCCGACGCTTCATGCCTGAGGCAGGCACTGCTGAATATGCTGAACTT
GAGTCCAACCCTGACGCAGCTTTCCTCAAAACAATTACAGCTCAATTGCA
AACTCTCCTTGGTGTATCTCTGATAGAGGTTTTATCACGACATTCAACTG
ATGAGGTTTATCTTGGGCAAAACGATACTCCTGAGTGGACTTCAGATGCT
GAAGCACTAGCAGCATTTGCAAGATTTGGAGAGAAGCTGATGGACATCGA
AAAGGGAATCAATGAAAGGAACAAGGATATGAGATTGAAGAACAGAGTTG
GGCCTGTAGACATGCCTTATACCTTGCTCTATCCTAACACATCAGACACG
AGCAGAGAGGGTGGACTCACTGGAAAAGGAATTCCCAACAGTGTCTCAAT
CTGA

protein sequence of MDP0000204470

>MDP0000204470 ID=MDP0000204470; Name=MDP0000204470; organism=Malus x domestica; type=polypeptide; length=804bp
NGLKSRGKLGEVAYLEKWVTTTTSLSAGEASFSISLDWDESHGVPGALLI
RNHHHSQFYLKTITLEDVPGHGQLHFVCNSWVYPAHRYKYNRIFFPNKAY
LPSETPELLHPYREDELVNLRGSGSGEXKEWDRVYDYAYYNDLGSPDKGP
EYARPVLGGSNEYPYPRRGRTGREPTKTDPNSESRLPLLSLDIYVPKDER
FGHVKFSDFLAYGLKSLVQILLPELKSLCDKTINEFDTFEDVLNLYDGGI
KLPNGPTLKKIRECIPWELLKELIRSDGERFLKFPMPDVIKRDRSAWRTD
EEFAREMLAGVNPVNITRLQEFPPVSKLDPKVYGNQNSSIREEHIASNMN
GLTVNEAIESNRLFILDHHDALXXYLRRINSTHTKTYATRTLLLLQEDGT
LKPLAIELSLPHPQGDRHGCVSTVFNPPGQGKKGXEESVWQLAKAYAAVN
DSGYHQLISHWLNTHAVIEPFVIATHRQLSELHPIHKLLHPHFRDTMNIN
ALARQILINADGVLEKTVFPGRFSMEMSAVIYKSWVFTDQALPADLCKRG
MAVLDKTCPHGLRLLIEDYPFAVDGLEIWSAIQTWVDEYCCLYYESDDAV
QVDSELQDWWTELRNVGHGDKKNEPWWPKMQTRDELIESCTIIIWVASAL
HAAVNFGQYSYAGYLPNRPTVSRRFMPEAGTAEYAELESNPDAAFLKTIT
AQLQTLLGVSLIEVLSRHSTDEVYLGQNDTPEWTSDAEALAAFARFGEKL
MDIEKGINERNKDMRLKNRVGPVDMPYTLLYPNTSDTSREGGLTGKGIPN
SVSI

mRNA from alignment at chr16:14636918..14641021+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000204470 ID=MDP0000204470; Name=MDP0000204470; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr16:14636918..14641021+ (Malus x domestica

mRNA from alignment at MDC013556.567:300..4403+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000204470 ID=MDP0000204470; Name=MDP0000204470; organism=Malus x domestica; type=mRNA; length=4104bp; location=Sequence derived from: MDC013556.567:300..4403+ (Malus x domestica
AATGGATTGAAATCGAGAGGGAAGCTTGGAGAGGTAGCTTACTTGGAGAA
ATGGGTTACAACGACTACATCTTTGTCGGCCGGAGAAGCTAGTTTCTCCA
TTTCCTTGGATTGGGATGAGTCTCATGGTGTTCCCGGGGCATTGTTGATC
AGAAACCACCACCATAGCCAATTCTACCTCAAGACAATAACATTAGAAGA
CGTTCCTGGGCACGGTCAACTCCATTTTGTCTGCAATTCTTGGGTATACC
CAGCACATCGTTACAAGTACAATAGAATATTTTTCCCCAACAAGGTACTG
GTTAATTAACATAATGCCAAGTCTAACACCTAGTTTGGGAGTGAGGTGCT
TAAAAAAAAACACCTATGAAAAAAAACTATTAGGGTTTTAGATGTTTGTT
AAACTGAAAAAAAATGGCTTATTTTGGAARCTGTGTGAGAATAAGCTGAA
ATCAAAGGAAAAAGCTGAAGCTGCTATTTGTAGCTTTGGAAAACTGGCTT
TTTTTTCAAAGCACACGGGGTTACAGTGCTCCTTTAATGAAAAGACCCAC
TATCAGACTGCTTTTTTTTCCAAAAGCACTTTTACAAAAAAGTTTACCAA
ACGCTTTGCTGATTTATTTCACAGCCGCTTATTCTCACAGCACAGCCGCT
TATTCTCACAGTAGTTTTTTTTCAAAGTACAGCAATACCAAACCAGCCCT
CCATCAGGGAGAGACAGTTTTCACTAGTTTTTTTTTTCTTTTTATAATTT
TTATTTAAGAAAGAAGAAATCTGGAATCTTGTAGCTCATGCAGCATGCTT
TGTTATTCTTTGATTAAAATAACAAGTAAATAAAGGTTTAGTGACTTGAT
CAATTGGTTTTAGCATCTGATCTTATCCGAACCATGTGGTCAGATTCTGC
AATGATCGATCCTTTTAATCTCAATAGTATGGAAAAATCATAATCCATTA
CTTTTCCAGCTGGATTAGCACTCGCACWTAAAAAAATCATTTTATATTAT
GTTTGATTTAATTTTTTCTAGTTTCATTAAATCTTTTGGTATTTTGACAA
ATATAAGATACAACATTAGTTACATTCAGTGGCTTTTTTKGTGGAACACA
ATTCAACAATTTTCAAAAGTTTCGATAAATTGGTTTTTCTCTAATTTATT
RAAAGAGAAATGAKWTATTTATTTTTGTTCATTTTTCTCCTATGATTCAC
CAATCAAATAAGAGTGCGCAAGAAAAAGAAAAAAGACGCTTGGCRCCGGA
ATCACTTCCCCTGCTGAAAWGCAGAAATGAAAYTGAAACGCAGAAATGAA
ACTGAAATGCTATAATTTTTGTTAAGGTACTTACGAGACTGCACTGCCCT
GACTGAAAACTTGATTTTTTGTTTAGGCCTACCTGCCATCTGAAACACCT
GAGCTACTACACCCTTACAGGGAAGATGAACTYGTTAATCTCCGAGGGAG
TGGATCAGGCGAACWAAAGGAGTGGGACAGAGTCTATGACTATGCTTATT
ACAATGATTTAGGGAGTCCAGACAAGGGTCCAGAATATGCCCGCCCTGTA
CTTGGTGGGTCGAACGAGTATCCATATCCAAGAAGAGGAAGAACTGGTCG
AGAACCAACTAAAACCGGTTCGTAACCTAAATGGCTCATTTTRCTAATCA
AGTCGTGACTAAGTTAAAATATGGCGACAACACGTACAGCATGAAGCATT
CCTTACGGTTCTATCTATGACCAATTTTCTCTTATGCTTTGTACAGACCC
CAATTCCGAGAGCAGACTGCCGCTTCTAAGTCTAGAYATTTACGTTCCGA
AAGACGAGCGGTTTGGCCACGTGAAGTTTTCAGATTTTCTTGCCTATGGC
CTGAAATCCCTGGTTCAAATATTGCTTCCAGAACTTAAGTCTTTGTGTGA
TAAAACTATCAACGAGTTTGACACCTTTGAGGATGTACTTAATCTCTATG
ACGGAGGTATCAAGCTACCAAATGGACCTACTCTCAAGAAAATACGGGAG
TGCATCCCTTGGGAGCTGCTTAAGGAACTGATTCGCTCAGATGGCGAGCG
ATTTCTCAAGTTTCCAATGCCTGATGTGATTAAAAGTACATAAAGATATT
TTTTCCCCTGTGACATGGTTTTAGATATGCTACATTCCTATATTGTTGAA
CATAAATCGTATTCAACTATGAATTTTTCCTGATATAATTGCAGGAGATA
GGTCTGCATGGAGGACAGACGAAGAGTTTGCACGAGAAATGCTAGCAGGG
GTGAACCCTGTTAACATCACCCGCCTCCAAGTAAAATATACAATTTTCCA
TGGTTCATATTACAATTATAGTGGCATGGATTTGTTCTAAGTTGTCCAAA
TAATCACCAAAATTTTAACTACAGGAGTTTCCCCCAGTTAGCAAGCTAGA
CCCAAAAGTGTACGGGAATCAGAACAGTTCGATAAGAGAAGAGCACATTG
CAAGCAACATGAATGGCCTCACGGTTAATGAGGTACAAATGATGCTTCAT
TTGTTTCCAGTATATATTTTATACGATTATAGTCTGTGTTTTTAAATCTA
TGTACTGAAATAATCATTTTTGTCCCATTTTGCGCAGGCAATTGAAAGTA
ACAGGCTKTTCATATTAGATCATCATGATGCATTAMTGAYATACCTGAGG
CGAATAAACTCTACGCACACAAAGACGTATGCCACCAGAACTCTCCTCTT
GCTCCAAGAAGACGGGACATTGAAGCCTTTGGCAATTGAGTTGAGCTTAC
CACATCCACAAGGGGACCGTCATGGTTGTGTCAGTACAGTCTTCAATCCA
CCAGGACAAGGCAAAAAAGGCRTCGAGGAGTCGGTGTGGCAGCTTGCGAA
AGCTTATGCTGCTGTAAATGATTCTGGATATCATCAGCTTATCAGCCACT
GGTACGATGTCTAACATAGAAAGCGACATATTTTAYCATCAGGTAGCAGT
TTGGTTCTAGTTTACATGCTAATAATTATTATTTGCAGGTTAAACACACA
TGCTGTGATAGAGCCATTTGTGATTGCAACACATAGACAGTTGAGTGAGC
TTCACCCGATACATAAGCTTTTGCATCCGCACTTCCGGGACACAATGAAC
ATAAATGCCCTGGCCAGGCAAATCCTCATCAATGCTGATGGGGTACTTGA
GAAAACAGTCTTCCCAGGTCGATTCTCCATGGAAATGTCAGCCGTTATTT
ATAAGAGCTGGGTATTCACCGACCAGGCATTACCTGCTGACTTATGCAAG
AGGTAAGCCAGAAAGCCTAAATTGAAAATAATAAGATTTGAACTTCCATC
AAACTGAATATCATTTCGCTTCTGGTCTATTTCAGAGGAATGGCAGTTCT
AGATAAGACCTGTCCTCATGGCCTCAGACTTCTGATTGAAGATTACCCAT
TTGCTGTTGATGGGCTAGAAATCTGGTCGGCGATTCAAACTTGGGTTGAT
GAATACTGCTGTTTGTACTACGAATCAGATGATGCGGTCCAAGTTGATTC
TGAACTCCAGGACTGGTGGACAGAGCTTCGCAATGTAGGCCACGGTGACA
AGAAGAATGAACCATGGTGGCCTAAGATGCAAACAAGAGATGAACTTATT
GAATCATGTACCATAATTATATGGGTGGCTTCTGCCCTCCATGCAGCTGT
CAATTTCGGGCAATACTCTTATGCTGGTTACCTCCCTAACCGCCCAACTG
TAAGCCGACGCTTCATGCCTGAGGCAGGCACTGCTGAATATGCTGAACTT
GAGTCCAACCCTGACGCAGCTTTCCTCAAAACAATTACAGCTCAATTGCA
AACTCTCCTTGGTGTATCTCTGATAGAGGTTTTATCACGACATTCAACTG
ATGAGGTTTATCTTGGGCAAAACGATACTCCTGAGTGGACTTCAGATGCT
GAAGCACTAGCAGCATTTGCAAGATTTGGAGAGAAGCTGATGGACATCGA
AAAGGGAATCAATGAAAGGAACAAGGATATGAGATTGAAGAACAGAGTTG
GGCCTGTAGACATGCCTTATACCTTGCTCTATCCTAACACATCAGACACG
AGCAGAGAGGGTGGACTCACTGGAAAAGGAATTCCCAACAGTGTCTCAAT
CTGA

Coding sequence (CDS) from alignment at MDC013556.567:300..4403+

>MDP0000204470 ID=MDP0000204470; Name=MDP0000204470; organism=Malus x domestica; type=CDS; length=2415bp; location=Sequence derived from: MDC013556.567:300..4403+ (Malus x domestica
AATGGATTGAAATCGAGAGGGAAGCTTGGAGAGGTAGCTTACTTGGAGAA
ATGGGTTACAACGACTACATCTTTGTCGGCCGGAGAAGCTAGTTTCTCCA
TTTCCTTGGATTGGGATGAGTCTCATGGTGTTCCCGGGGCATTGTTGATC
AGAAACCACCACCATAGCCAATTCTACCTCAAGACAATAACATTAGAAGA
CGTTCCTGGGCACGGTCAACTCCATTTTGTCTGCAATTCTTGGGTATACC
CAGCACATCGTTACAAGTACAATAGAATATTTTTCCCCAACAAGGCCTAC
CTGCCATCTGAAACACCTGAGCTACTACACCCTTACAGGGAAGATGAACT
YGTTAATCTCCGAGGGAGTGGATCAGGCGAACWAAAGGAGTGGGACAGAG
TCTATGACTATGCTTATTACAATGATTTAGGGAGTCCAGACAAGGGTCCA
GAATATGCCCGCCCTGTACTTGGTGGGTCGAACGAGTATCCATATCCAAG
AAGAGGAAGAACTGGTCGAGAACCAACTAAAACCGACCCCAATTCCGAGA
GCAGACTGCCGCTTCTAAGTCTAGAYATTTACGTTCCGAAAGACGAGCGG
TTTGGCCACGTGAAGTTTTCAGATTTTCTTGCCTATGGCCTGAAATCCCT
GGTTCAAATATTGCTTCCAGAACTTAAGTCTTTGTGTGATAAAACTATCA
ACGAGTTTGACACCTTTGAGGATGTACTTAATCTCTATGACGGAGGTATC
AAGCTACCAAATGGACCTACTCTCAAGAAAATACGGGAGTGCATCCCTTG
GGAGCTGCTTAAGGAACTGATTCGCTCAGATGGCGAGCGATTTCTCAAGT
TTCCAATGCCTGATGTGATTAAAAGAGATAGGTCTGCATGGAGGACAGAC
GAAGAGTTTGCACGAGAAATGCTAGCAGGGGTGAACCCTGTTAACATCAC
CCGCCTCCAAGAGTTTCCCCCAGTTAGCAAGCTAGACCCAAAAGTGTACG
GGAATCAGAACAGTTCGATAAGAGAAGAGCACATTGCAAGCAACATGAAT
GGCCTCACGGTTAATGAGGCAATTGAAAGTAACAGGCTKTTCATATTAGA
TCATCATGATGCATTAMTGAYATACCTGAGGCGAATAAACTCTACGCACA
CAAAGACGTATGCCACCAGAACTCTCCTCTTGCTCCAAGAAGACGGGACA
TTGAAGCCTTTGGCAATTGAGTTGAGCTTACCACATCCACAAGGGGACCG
TCATGGTTGTGTCAGTACAGTCTTCAATCCACCAGGACAAGGCAAAAAAG
GCRTCGAGGAGTCGGTGTGGCAGCTTGCGAAAGCTTATGCTGCTGTAAAT
GATTCTGGATATCATCAGCTTATCAGCCACTGGTTAAACACACATGCTGT
GATAGAGCCATTTGTGATTGCAACACATAGACAGTTGAGTGAGCTTCACC
CGATACATAAGCTTTTGCATCCGCACTTCCGGGACACAATGAACATAAAT
GCCCTGGCCAGGCAAATCCTCATCAATGCTGATGGGGTACTTGAGAAAAC
AGTCTTCCCAGGTCGATTCTCCATGGAAATGTCAGCCGTTATTTATAAGA
GCTGGGTATTCACCGACCAGGCATTACCTGCTGACTTATGCAAGAGAGGA
ATGGCAGTTCTAGATAAGACCTGTCCTCATGGCCTCAGACTTCTGATTGA
AGATTACCCATTTGCTGTTGATGGGCTAGAAATCTGGTCGGCGATTCAAA
CTTGGGTTGATGAATACTGCTGTTTGTACTACGAATCAGATGATGCGGTC
CAAGTTGATTCTGAACTCCAGGACTGGTGGACAGAGCTTCGCAATGTAGG
CCACGGTGACAAGAAGAATGAACCATGGTGGCCTAAGATGCAAACAAGAG
ATGAACTTATTGAATCATGTACCATAATTATATGGGTGGCTTCTGCCCTC
CATGCAGCTGTCAATTTCGGGCAATACTCTTATGCTGGTTACCTCCCTAA
CCGCCCAACTGTAAGCCGACGCTTCATGCCTGAGGCAGGCACTGCTGAAT
ATGCTGAACTTGAGTCCAACCCTGACGCAGCTTTCCTCAAAACAATTACA
GCTCAATTGCAAACTCTCCTTGGTGTATCTCTGATAGAGGTTTTATCACG
ACATTCAACTGATGAGGTTTATCTTGGGCAAAACGATACTCCTGAGTGGA
CTTCAGATGCTGAAGCACTAGCAGCATTTGCAAGATTTGGAGAGAAGCTG
ATGGACATCGAAAAGGGAATCAATGAAAGGAACAAGGATATGAGATTGAA
GAACAGAGTTGGGCCTGTAGACATGCCTTATACCTTGCTCTATCCTAACA
CATCAGACACGAGCAGAGAGGGTGGACTCACTGGAAAAGGAATTCCCAAC
AGTGTCTCAATCTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000907	LipOase
IPR001024	PLAT/LH2_dom
IPR001246	LipOase_plant
IPR008976	Lipase/lipooxygenase, PLAT/LH2
IPR013819	LipOase_C
IPR020833	LipOase_Fe_BS
IPR020834	LipOase_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0005515	protein binding
GO:0005506	iron ion binding
GO:0016165	linoleate 13S-lipoxygenase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	obsolete oxidation-reduction process