MDP0000215349, MDP0000215349 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000215349
Unique Name	MDP0000215349
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	4786

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr15	chromosome	chr15:4111215..4116000 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC015491.125	contig	MDC015491.125:3661..8446 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000215349_exon_1	MDP0000215349_exon_1	Malus x domestica	CDS
MDP0000215349_exon_2	MDP0000215349_exon_2	Malus x domestica	CDS
MDP0000215349_exon_3	MDP0000215349_exon_3	Malus x domestica	CDS
MDP0000215349_exon_4	MDP0000215349_exon_4	Malus x domestica	CDS
MDP0000215349_exon_5	MDP0000215349_exon_5	Malus x domestica	CDS
MDP0000215349_exon_6	MDP0000215349_exon_6	Malus x domestica	CDS
MDP0000215349_exon_7	MDP0000215349_exon_7	Malus x domestica	CDS
MDP0000215349_exon_8	MDP0000215349_exon_8	Malus x domestica	CDS
MDP0000215349_exon_9	MDP0000215349_exon_9	Malus x domestica	CDS
MDP0000215349_exon_10	MDP0000215349_exon_10	Malus x domestica	CDS
MDP0000215349_exon_11	MDP0000215349_exon_11	Malus x domestica	CDS
MDP0000215349_exon_12	MDP0000215349_exon_12	Malus x domestica	CDS
MDP0000215349_exon_13	MDP0000215349_exon_13	Malus x domestica	CDS
MDP0000215349_exon_14	MDP0000215349_exon_14	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000215349	MDP0000215349	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 372..403 score: 4.6e-05coord: 409..446 score: 2.1e-11coord: 454..490 score: 1.4e-06coord: 494..530 score: 7.4e-08coord: 576..611 score: 0.
IPR001680	WD40 repeat	SMART	SM00320	WD40 repeats	coord: 365..404 score: 2e-05coord: 407..446 score: 6.3e-10coord: 450..490 score: 2.3e-07coord: 493..531 score: 4.8e-08coord: 572..611 score: 0.
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 372..403 score: 9.673coord: 414..449 score: 14.084coord: 457..494 score: 12.012coord: 500..540 score: 9.205coord: 579..611 score: 11
IPR003657	DNA-binding WRKY	GENE3D	2.20.25.80	no description	coord: 141..182 score: 2.1
IPR003657	DNA-binding WRKY	PFAM	PF03106	WRKY	coord: 143..182 score: 7.7
IPR003657	DNA-binding WRKY	SMART	SM00774	DNA binding domain	coord: 139..183 score: 5.7
IPR003657	DNA-binding WRKY	PROFILE	PS50811	WRKY	coord: 143..179 score: 12
IPR003657	DNA-binding WRKY	SUPERFAMILY	118290	WRKY DNA-binding domain	coord: 130..185 score: 1.9
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10	no description	coord: 365..611 score: 2.2
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 372..540 score: 33.590coord: 579..611 score: 10
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 348..611 score: 2.4
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 433..447 score
None	No IPR available	PANTHER	PTHR22847	FAMILY NOT NAMED	coord: 220..611 score: 1
None	No IPR available	SEG	seg	seg	coord: 50..65 score: NAcoord: 262..303 score
None	No IPR available	SEG	seg	seg	coord: 14..26 score: NAcoord: 31..46 score
None	No IPR available	SEG	seg	seg	coord: 2..13 score
None	No IPR available	SEG	seg	seg	coord: 1..12 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr15:4111215..4116000-
mRNA from alignment at MDC015491.125:3661..8446-
coding sequence from alignment at MDC015491.125:3661..8446-

mRNA sequence

>MDP0000215349 ID=MDP0000215349; Name=MDP0000215349; organism=Malus x domestica; type=mRNA; length=4786bp
ATGAAAACAAAAATTARTAGATRGTAAGYGGTAAGTGGTGAATTGCCATG
GTGGTTGAGAYMTTCTTCAACAACTCACTAGATTCACGATTCAAACCCTT
ACCCCTGCCCTTAGTGTGKATGTCGCTTGCCCTTAGTTTATTTAATCTTG
TAGTTGCTAATAAATCTTACGTACTTTTGCTTCATTCTCAAATTTACCTA
CCAGGTACGAAGGAACGTTCATAAGGGAAATCATTGCCGGGATCACAGTT
GGAATATCTTCTTCCGAGCTTCAAAGATTAGATTCTCCCAAGCTCGAAGA
TATCGATTCTACCGAGCACACAGATATAGCTTCTTCCGTGTCTAGCGCCA
GCTCTCCCTTCTCTTTGGCGCCGTTGAAAAAGACGCATCACGAGCCCGAC
CGCTCTGACGGTACCTCACGCAAGCCTTCGGAGATAGGGTACGCGTCATT
CACTAACAGCGCATTTTTGCGTTCTATTCCTCTCCCCAGCTAAAATACGC
ATCCTCTCACGGTCATAGTCCCGATTAAGGATGAACAAACCATGAAAATT
GGTTCGACTATCCCAGTAAGCGGGTTGACTCGAACAATTCAACTCGGTTT
CACTTAATGGACCCGGTCTGTCTCGGGTCGACGGGCTATGTTGCTGGGCC
ATTAATTGTTGTAGCATGCGTTGACGCTAACACGATAAGTTGCGCCTGGT
GTATTTTAGAAATTCCACATTGGAATAGTAATTAATTGTTGTGATTTTTG
GTAATTCAGCAAAGTTCGGGTGCCGGCGGATCGTTCTGAAGACGGGTATA
GCTGGTGCAAGTACGGTCAAAAGGATGTGCTCGGCTCGTCACATCCAAGG
CACTGAATTTAAATCTCAATCGTAGATTTGTAATCAAATGAAAAATAGGA
GGTTGGATGATATTATCGAACGGTGAGAATTGAATATGATGTTTGCTTAA
TTGTTTTTGTTTATCAGATCATATTACAGGTGCACATACAGATTCACGCA
GGGGTGCCGGGCCACAAAACAGGTGGAGCGCGACCCGGATGATCCAGCGA
TGCTGACCGTAACGTACAAAGGGGTGCACGTGTGCAGAGCGGCGACAGGA
TTTGTCGAAGGGAGGGATAAAATTCAAATAAGTGTAAGGTTCAATTGAAG
CTGTTGCTTTTATATTGGAAAGTGCGATTTTGAGTCAATATTCATAATAG
AAAATAATTTCTTTACCAAAACGGTTGTAAGCGGTATATTAAAGCCAATG
TAAGAAACTTAAATTGGCTAGGATTATATTCCATAAAACGTTAGACACTA
GTCAAGCATCAAACTGAGACCTAACAACCATGCGCCTAGACGAGATCTAG
GCAAGAGCCTAAATGAATTTAAATGAATTTCTTTTATCGTAAAATAAACA
TTAAACAATATTTACATTAGTTTTTATAGTTTAGAATCTTGAAGCAACCA
ATGTTCGTTTAAATTTAAAATCTCTATCGTCTATTTGGTTGCATTTCCGA
AGCTTAGAGTATCACCCATTAATACTCTACAACTGTTTTTCTCCTTGTTA
GGGTTTGGAGCAGCTTCACTGTGGACTACTTCAGCAACCGAAACCTTTCA
TACAAGCTCCCCAGCCCTTTCATCAGCTTCAGATGTTGACACCACAACAC
CAGCAACTTATGCTTGCTCAGCAAAATATGACATCACCGTCTGCTGCCAA
TGATGAAAGTAGAGATACAGATAGGCTGACTAAGGTGCTCCAATCTCTGT
CTATTTCACTTGTAGTTGTAATTGTTATGGTGGCAGAGTTTACCCCCTCT
GTACTTCGACATATTATCAAACAGTTCATTCTCTTTGGCTTCTGAGAGTG
TTTGTTTGTTTGTAGTTAAAAATGGCTCAACTTCAGCAGCAACAAAACAG
CAATCCTCAACAGCAACAGCAACAGCAACAGCAACAGCTTCAACAGCACG
CTCTTTCTAATCAGCAGTCACAAAATTCAAATCTCAATCCCCATCAGCAA
GATAAAATGGGGGGTGCTGGCAGCATCACTATGGATGGTAGCATGTCGAA
CTCTTTTCGAGGAAATGATCCGGTCTGTCCTTTTATGGTTATTTATTATG
AACTCTTTCTTGGTCAATTAACTCAGGCTTGTATTGCTTATCAAACTTAC
AACCTTGTAGAATAGTAATTGTTCAATTTTTTATTTACACATTGTCGAGA
ATTCTTGGGGAAGCTTCTTATACAGTTTTGCCTATGCAATTTAAGCTTCT
TACATCACCATCGCATCAGTTGGTGAGTGATTTCTTCATCTTCTTGTATT
AGAAGGAATTGGCAATTCCTTGCACGGATTCTCATTGGGATTCCATTTTG
GCAGTGGGATGATAAAGATCTTGAATGCAGGCTGATATGGATCGATTTGT
ACAGGATGGGTCTGTTGGTGATAATGTCGAGTCTTTTTTATCCCCTGATG
ATGTGGATCGTAGAGATGCTGTTGGTCGATGTATGGATGTCAGCAAAGGT
GCGGTGGGKGCCATGTTGTTGAATGAAKTCTTTGTTTAACATCATCCTGA
ACGTAGTATCTGCCAGTATTTTCTCACCTACAATGCAATTCTTTCSYATT
TTCTTGAATATTAGATATATACATTCATAAAAACCAGGACACTGCAAGTC
ATCGGTATTGACTCACARGTCTCAATTAATGATCTTTGTCTTTTTTCTTT
TGTCAATATTTATTCGCATATATAATTGTGTTGTCCACAAACAGTGTACT
TGTTCTTCTTATCTTCGTAAACATTCAAAGGAGAGAATGTAGATGTAACT
TATCATACGGTCAACTAATAAAAAATCTGTCAACCAATTTTTCTGCAACC
TTTCTTTTCAACTGCATCTTTTTGGTTGTGTACTTGGTTTCAGGGAATTG
CATTTGTAAGTGTTATTTTGTTCATCATAGTTATTTTTTTTCTTTTTAAA
TAATTAAAAWAAGTAAACCTGGTTKTTTGCGGCTACTATTGTTTACTTTG
AGGGCTCAGAATTTGAATTTGACTGCAGGGTTCACATTTACGGAAGTAAA
CTCTATTAAAGCAAGCGCAAGCAAGGTTACAAGCTGTCACTTCTCATCAG
ATGGGAAGTTTCTTGCTAGTGGGGGCCATGATAAAARGGTGAGTGAATGA
ATGTTGAAATTGCTAATAACTTCTGTGGGAGGATTCAGAACTGCTGCTAC
ATATTGGTTAATTGATTCTTCCCGAACATTAACGTGTAAAATTGTTTGTT
TAGTTTACTTCTTAAAAGCTWTAACGTTTACTTTGTTGGTTGATGCTTGT
ACTTATTTAGTGTGTTCTTGACATGTGTATTATGCAGGCTGTATTGTGGT
ACACAGATACATTAAAGCTAAAATGTACGCTACAAGAACATTCAGCTTTG
ATAACTGATGTTCGTTTTAGTCCGAGCAAGCCATGTCTTGCAACGTCTTC
TTTCGACAAGACTATCAGGGTTTGGGATGCCGACAATGTTAGTGAAAAAT
TCTTCTGTCCTTATCATCTACTTAGCTTATAGTCTGATTTTAACCTATTG
ATTCGAGATTTGAAGACTTGTTTGAGTAATCAAACAAGTATACATACTTS
TAGTTTGRTTTCTATCATACATTCTGTAATCTTTGCCATTATGAGTTCAT
CTATATGCTTCATTGCTCGGGTGCTGAGTTTGTGCCTCTATTCTTAAAAA
GATGATTTATCTTTTGTGACATGCTGTATCAAGCCTTCTTTATGTTTTTA
TTCTGCAGCCTRGTTATTCTCTCCGTAMCTTTAKGGGACATTCGGCCTCT
GTTATGTCATTAGATTTCCACCCAAATAAAGACGACCTCATCTGTTCTTG
TGACGGGGATGGTCAGATACGCTACTGGAGTATTAACAATGGCTGCTGCT
CGTGCGTGTCTAAGGTAGAATCTTGTCTTCTGGGATGCAGGAAGTTGATG
GGGGTGGGGTAGTGGTGGTTTTCATATTATATACGTTTTGGTGATTCTGA
TATGCAAGAACGTATTAGGGTGGTACGGCACAAATAAGATTTCAACCCCG
TCTTGGAAAATTTCTTGCTGCAGCCGCAGAGAATGTTGTATCTATACTGG
ATGTTGAGACTCAGACTTGTCAGTATTCTTTACAGGTCAATCTAACATTT
TGTCTCACTATAATTTTTCTTTCATAGTTGTAATTTAAACGGATCATGTA
ATATTATCATGTGAATTCTCAACTGCTTTACTTGGAATTTGGTTTTGAAT
GCAGGGGCATACTAAGCCTATCCATTCTGTGTGTTGGGATCCTTCTGGCG
AATTCCTTGCATCTGTCAGCGAGGACTCTGTAAGAGTTTGGACACTTGGA
GCAGGAAGCGAAGTGGAATGCGTTCATGAGTTTAGCTGCATCGGAAATAA
ATTTCATTCATGCGTTTTCCATCCTACATATACTTCACTGCTGGTCATTG
GCTGCTATCAGGCAAGTCAATGCATTATTGTTCTTATATAATGTTCGTTA
CATTTTTTGCTTGGAGACCACTACTCTCTTAAGCCGTTCGGATATTTGTT
CCCATTTTACACGGGAGAAACTATCCTTTACTGGTACTAGTGTTGCTGCA
AGATATCATATTTTGATTTTTATTTGGGGAAAATAATTGCAGACACTGGA
GTTATGGAACATGACAGAGAACAAGACAATGACTYTACCAGCACATGAAG
GACTCATTGATTCTTTGGCGGTGTCAACTGTTACAGGTTTGATTTCTTCG
GCTAGTCACGATACGTTTGTCAAGATCTGGAAGTGA

protein sequence of MDP0000215349

>MDP0000215349 ID=MDP0000215349; Name=MDP0000215349; organism=Malus x domestica; type=polypeptide; length=611bp
MKTKIXRXYEGTFIREIIAGITVGISSSELQRLDSPKLEDIDSTEHTDIA
SSVSSASSPFSLAPLKKTHHEPDRSDGTSRKPSEIGKRVDSNNSTRFHLM
DPVCLGSTGYVAGPLIVVACVDANTISCACKVRVPADRSEDGSYYRCTYR
FTQGCRATKQVERDPDDPAMLTVTYKGVHVCRAATGFVEGRDKIQISGLE
QLHCGLLQQPKPFIQAPQPFHQLQMLTPQHQQLMLAQQNMTSPSAANDES
RDTDRLTKLKMAQLQQQQNSNPQQQQQQQQQQLQQHALSNQQSQNSNLNP
HQQDKMGGAGSITMDGSMSNSFRGNDPDGSVGDNVESFLSPDDVDRRDAV
GRCMDVSKGNCIWFTFTEVNSIKASASKVTSCHFSSDGKFLASGGHDKXA
VLWYTDTLKLKCTLQEHSALITDVRFSPSKPCLATSSFDKTIRVWDADNP
XYSLRXFXGHSASVMSLDFHPNKDDLICSCDGDGQIRYWSINNGCCSCVS
KGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGAGSEVECVHEFSCIGNK
FHSCVFHPTYTSLLTLELWNMTENKTMTXPAHEGLIDSLAVSTVTGLISS
ASHDTFVKIWK

mRNA from alignment at chr15:4111215..4116000-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000215349 ID=MDP0000215349; Name=MDP0000215349; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr15:4111215..4116000- (Malus x domestica

mRNA from alignment at MDC015491.125:3661..8446-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000215349 ID=MDP0000215349; Name=MDP0000215349; organism=Malus x domestica; type=mRNA; length=4786bp; location=Sequence derived from: MDC015491.125:3661..8446- (Malus x domestica
ATGAAAACAAAAATTARTAGATRGTAAGYGGTAAGTGGTGAATTGCCATG
GTGGTTGAGAYMTTCTTCAACAACTCACTAGATTCACGATTCAAACCCTT
ACCCCTGCCCTTAGTGTGKATGTCGCTTGCCCTTAGTTTATTTAATCTTG
TAGTTGCTAATAAATCTTACGTACTTTTGCTTCATTCTCAAATTTACCTA
CCAGGTACGAAGGAACGTTCATAAGGGAAATCATTGCCGGGATCACAGTT
GGAATATCTTCTTCCGAGCTTCAAAGATTAGATTCTCCCAAGCTCGAAGA
TATCGATTCTACCGAGCACACAGATATAGCTTCTTCCGTGTCTAGCGCCA
GCTCTCCCTTCTCTTTGGCGCCGTTGAAAAAGACGCATCACGAGCCCGAC
CGCTCTGACGGTACCTCACGCAAGCCTTCGGAGATAGGGTACGCGTCATT
CACTAACAGCGCATTTTTGCGTTCTATTCCTCTCCCCAGCTAAAATACGC
ATCCTCTCACGGTCATAGTCCCGATTAAGGATGAACAAACCATGAAAATT
GGTTCGACTATCCCAGTAAGCGGGTTGACTCGAACAATTCAACTCGGTTT
CACTTAATGGACCCGGTCTGTCTCGGGTCGACGGGCTATGTTGCTGGGCC
ATTAATTGTTGTAGCATGCGTTGACGCTAACACGATAAGTTGCGCCTGGT
GTATTTTAGAAATTCCACATTGGAATAGTAATTAATTGTTGTGATTTTTG
GTAATTCAGCAAAGTTCGGGTGCCGGCGGATCGTTCTGAAGACGGGTATA
GCTGGTGCAAGTACGGTCAAAAGGATGTGCTCGGCTCGTCACATCCAAGG
CACTGAATTTAAATCTCAATCGTAGATTTGTAATCAAATGAAAAATAGGA
GGTTGGATGATATTATCGAACGGTGAGAATTGAATATGATGTTTGCTTAA
TTGTTTTTGTTTATCAGATCATATTACAGGTGCACATACAGATTCACGCA
GGGGTGCCGGGCCACAAAACAGGTGGAGCGCGACCCGGATGATCCAGCGA
TGCTGACCGTAACGTACAAAGGGGTGCACGTGTGCAGAGCGGCGACAGGA
TTTGTCGAAGGGAGGGATAAAATTCAAATAAGTGTAAGGTTCAATTGAAG
CTGTTGCTTTTATATTGGAAAGTGCGATTTTGAGTCAATATTCATAATAG
AAAATAATTTCTTTACCAAAACGGTTGTAAGCGGTATATTAAAGCCAATG
TAAGAAACTTAAATTGGCTAGGATTATATTCCATAAAACGTTAGACACTA
GTCAAGCATCAAACTGAGACCTAACAACCATGCGCCTAGACGAGATCTAG
GCAAGAGCCTAAATGAATTTAAATGAATTTCTTTTATCGTAAAATAAACA
TTAAACAATATTTACATTAGTTTTTATAGTTTAGAATCTTGAAGCAACCA
ATGTTCGTTTAAATTTAAAATCTCTATCGTCTATTTGGTTGCATTTCCGA
AGCTTAGAGTATCACCCATTAATACTCTACAACTGTTTTTCTCCTTGTTA
GGGTTTGGAGCAGCTTCACTGTGGACTACTTCAGCAACCGAAACCTTTCA
TACAAGCTCCCCAGCCCTTTCATCAGCTTCAGATGTTGACACCACAACAC
CAGCAACTTATGCTTGCTCAGCAAAATATGACATCACCGTCTGCTGCCAA
TGATGAAAGTAGAGATACAGATAGGCTGACTAAGGTGCTCCAATCTCTGT
CTATTTCACTTGTAGTTGTAATTGTTATGGTGGCAGAGTTTACCCCCTCT
GTACTTCGACATATTATCAAACAGTTCATTCTCTTTGGCTTCTGAGAGTG
TTTGTTTGTTTGTAGTTAAAAATGGCTCAACTTCAGCAGCAACAAAACAG
CAATCCTCAACAGCAACAGCAACAGCAACAGCAACAGCTTCAACAGCACG
CTCTTTCTAATCAGCAGTCACAAAATTCAAATCTCAATCCCCATCAGCAA
GATAAAATGGGGGGTGCTGGCAGCATCACTATGGATGGTAGCATGTCGAA
CTCTTTTCGAGGAAATGATCCGGTCTGTCCTTTTATGGTTATTTATTATG
AACTCTTTCTTGGTCAATTAACTCAGGCTTGTATTGCTTATCAAACTTAC
AACCTTGTAGAATAGTAATTGTTCAATTTTTTATTTACACATTGTCGAGA
ATTCTTGGGGAAGCTTCTTATACAGTTTTGCCTATGCAATTTAAGCTTCT
TACATCACCATCGCATCAGTTGGTGAGTGATTTCTTCATCTTCTTGTATT
AGAAGGAATTGGCAATTCCTTGCACGGATTCTCATTGGGATTCCATTTTG
GCAGTGGGATGATAAAGATCTTGAATGCAGGCTGATATGGATCGATTTGT
ACAGGATGGGTCTGTTGGTGATAATGTCGAGTCTTTTTTATCCCCTGATG
ATGTGGATCGTAGAGATGCTGTTGGTCGATGTATGGATGTCAGCAAAGGT
GCGGTGGGKGCCATGTTGTTGAATGAAKTCTTTGTTTAACATCATCCTGA
ACGTAGTATCTGCCAGTATTTTCTCACCTACAATGCAATTCTTTCSYATT
TTCTTGAATATTAGATATATACATTCATAAAAACCAGGACACTGCAAGTC
ATCGGTATTGACTCACARGTCTCAATTAATGATCTTTGTCTTTTTTCTTT
TGTCAATATTTATTCGCATATATAATTGTGTTGTCCACAAACAGTGTACT
TGTTCTTCTTATCTTCGTAAACATTCAAAGGAGAGAATGTAGATGTAACT
TATCATACGGTCAACTAATAAAAAATCTGTCAACCAATTTTTCTGCAACC
TTTCTTTTCAACTGCATCTTTTTGGTTGTGTACTTGGTTTCAGGGAATTG
CATTTGTAAGTGTTATTTTGTTCATCATAGTTATTTTTTTTCTTTTTAAA
TAATTAAAAWAAGTAAACCTGGTTKTTTGCGGCTACTATTGTTTACTTTG
AGGGCTCAGAATTTGAATTTGACTGCAGGGTTCACATTTACGGAAGTAAA
CTCTATTAAAGCAAGCGCAAGCAAGGTTACAAGCTGTCACTTCTCATCAG
ATGGGAAGTTTCTTGCTAGTGGGGGCCATGATAAAARGGTGAGTGAATGA
ATGTTGAAATTGCTAATAACTTCTGTGGGAGGATTCAGAACTGCTGCTAC
ATATTGGTTAATTGATTCTTCCCGAACATTAACGTGTAAAATTGTTTGTT
TAGTTTACTTCTTAAAAGCTWTAACGTTTACTTTGTTGGTTGATGCTTGT
ACTTATTTAGTGTGTTCTTGACATGTGTATTATGCAGGCTGTATTGTGGT
ACACAGATACATTAAAGCTAAAATGTACGCTACAAGAACATTCAGCTTTG
ATAACTGATGTTCGTTTTAGTCCGAGCAAGCCATGTCTTGCAACGTCTTC
TTTCGACAAGACTATCAGGGTTTGGGATGCCGACAATGTTAGTGAAAAAT
TCTTCTGTCCTTATCATCTACTTAGCTTATAGTCTGATTTTAACCTATTG
ATTCGAGATTTGAAGACTTGTTTGAGTAATCAAACAAGTATACATACTTS
TAGTTTGRTTTCTATCATACATTCTGTAATCTTTGCCATTATGAGTTCAT
CTATATGCTTCATTGCTCGGGTGCTGAGTTTGTGCCTCTATTCTTAAAAA
GATGATTTATCTTTTGTGACATGCTGTATCAAGCCTTCTTTATGTTTTTA
TTCTGCAGCCTRGTTATTCTCTCCGTAMCTTTAKGGGACATTCGGCCTCT
GTTATGTCATTAGATTTCCACCCAAATAAAGACGACCTCATCTGTTCTTG
TGACGGGGATGGTCAGATACGCTACTGGAGTATTAACAATGGCTGCTGCT
CGTGCGTGTCTAAGGTAGAATCTTGTCTTCTGGGATGCAGGAAGTTGATG
GGGGTGGGGTAGTGGTGGTTTTCATATTATATACGTTTTGGTGATTCTGA
TATGCAAGAACGTATTAGGGTGGTACGGCACAAATAAGATTTCAACCCCG
TCTTGGAAAATTTCTTGCTGCAGCCGCAGAGAATGTTGTATCTATACTGG
ATGTTGAGACTCAGACTTGTCAGTATTCTTTACAGGTCAATCTAACATTT
TGTCTCACTATAATTTTTCTTTCATAGTTGTAATTTAAACGGATCATGTA
ATATTATCATGTGAATTCTCAACTGCTTTACTTGGAATTTGGTTTTGAAT
GCAGGGGCATACTAAGCCTATCCATTCTGTGTGTTGGGATCCTTCTGGCG
AATTCCTTGCATCTGTCAGCGAGGACTCTGTAAGAGTTTGGACACTTGGA
GCAGGAAGCGAAGTGGAATGCGTTCATGAGTTTAGCTGCATCGGAAATAA
ATTTCATTCATGCGTTTTCCATCCTACATATACTTCACTGCTGGTCATTG
GCTGCTATCAGGCAAGTCAATGCATTATTGTTCTTATATAATGTTCGTTA
CATTTTTTGCTTGGAGACCACTACTCTCTTAAGCCGTTCGGATATTTGTT
CCCATTTTACACGGGAGAAACTATCCTTTACTGGTACTAGTGTTGCTGCA
AGATATCATATTTTGATTTTTATTTGGGGAAAATAATTGCAGACACTGGA
GTTATGGAACATGACAGAGAACAAGACAATGACTYTACCAGCACATGAAG
GACTCATTGATTCTTTGGCGGTGTCAACTGTTACAGGTTTGATTTCTTCG
GCTAGTCACGATACGTTTGTCAAGATCTGGAAGTGA

Coding sequence (CDS) from alignment at MDC015491.125:3661..8446-

>MDP0000215349 ID=MDP0000215349; Name=MDP0000215349; organism=Malus x domestica; type=CDS; length=1836bp; location=Sequence derived from: MDC015491.125:3661..8446- (Malus x domestica
ATGAAAACAAAAATTARTAGATRGTACGAAGGAACGTTCATAAGGGAAAT
CATTGCCGGGATCACAGTTGGAATATCTTCTTCCGAGCTTCAAAGATTAG
ATTCTCCCAAGCTCGAAGATATCGATTCTACCGAGCACACAGATATAGCT
TCTTCCGTGTCTAGCGCCAGCTCTCCCTTCTCTTTGGCGCCGTTGAAAAA
GACGCATCACGAGCCCGACCGCTCTGACGGTACCTCACGCAAGCCTTCGG
AGATAGGTAAGCGGGTTGACTCGAACAATTCAACTCGGTTTCACTTAATG
GACCCGGTCTGTCTCGGGTCGACGGGCTATGTTGCTGGGCCATTAATTGT
TGTAGCATGCGTTGACGCTAACACGATAAGTTGCGCCTGCAAAGTTCGGG
TGCCGGCGGATCGTTCTGAAGACGGATCATATTACAGGTGCACATACAGA
TTCACGCAGGGGTGCCGGGCCACAAAACAGGTGGAGCGCGACCCGGATGA
TCCAGCGATGCTGACCGTAACGTACAAAGGGGTGCACGTGTGCAGAGCGG
CGACAGGATTTGTCGAAGGGAGGGATAAAATTCAAATAAGTGGTTTGGAG
CAGCTTCACTGTGGACTACTTCAGCAACCGAAACCTTTCATACAAGCTCC
CCAGCCCTTTCATCAGCTTCAGATGTTGACACCACAACACCAGCAACTTA
TGCTTGCTCAGCAAAATATGACATCACCGTCTGCTGCCAATGATGAAAGT
AGAGATACAGATAGGCTGACTAAGTTAAAAATGGCTCAACTTCAGCAGCA
ACAAAACAGCAATCCTCAACAGCAACAGCAACAGCAACAGCAACAGCTTC
AACAGCACGCTCTTTCTAATCAGCAGTCACAAAATTCAAATCTCAATCCC
CATCAGCAAGATAAAATGGGGGGTGCTGGCAGCATCACTATGGATGGTAG
CATGTCGAACTCTTTTCGAGGAAATGATCCGGATGGGTCTGTTGGTGATA
ATGTCGAGTCTTTTTTATCCCCTGATGATGTGGATCGTAGAGATGCTGTT
GGTCGATGTATGGATGTCAGCAAAGGGAATTGCATTTGGTTCACATTTAC
GGAAGTAAACTCTATTAAAGCAAGCGCAAGCAAGGTTACAAGCTGTCACT
TCTCATCAGATGGGAAGTTTCTTGCTAGTGGGGGCCATGATAAAARGGCT
GTATTGTGGTACACAGATACATTAAAGCTAAAATGTACGCTACAAGAACA
TTCAGCTTTGATAACTGATGTTCGTTTTAGTCCGAGCAAGCCATGTCTTG
CAACGTCTTCTTTCGACAAGACTATCAGGGTTTGGGATGCCGACAATCCT
RGTTATTCTCTCCGTAMCTTTAKGGGACATTCGGCCTCTGTTATGTCATT
AGATTTCCACCCAAATAAAGACGACCTCATCTGTTCTTGTGACGGGGATG
GTCAGATACGCTACTGGAGTATTAACAATGGCTGCTGCTCGTGCGTGTCT
AAGGGGCATACTAAGCCTATCCATTCTGTGTGTTGGGATCCTTCTGGCGA
ATTCCTTGCATCTGTCAGCGAGGACTCTGTAAGAGTTTGGACACTTGGAG
CAGGAAGCGAAGTGGAATGCGTTCATGAGTTTAGCTGCATCGGAAATAAA
TTTCATTCATGCGTTTTCCATCCTACATATACTTCACTGCTGACACTGGA
GTTATGGAACATGACAGAGAACAAGACAATGACTYTACCAGCACATGAAG
GACTCATTGATTCTTTGGCGGTGTCAACTGTTACAGGTTTGATTTCTTCG
GCTAGTCACGATACGTTTGTCAAGATCTGGAAGTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_rpt
IPR003657	WRKY_dom
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom
IPR019775	WD40_repeat_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0003700	DNA-binding transcription factor activity
GO:0043565	sequence-specific DNA binding