MDP0000215486, MDP0000215486 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000215486
Unique NameMDP0000215486
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length3014
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000215486_exon_1MDP0000215486_exon_1Malus x domesticaCDS
MDP0000215486_exon_2MDP0000215486_exon_2Malus x domesticaCDS
MDP0000215486_exon_3MDP0000215486_exon_3Malus x domesticaCDS
MDP0000215486_exon_4MDP0000215486_exon_4Malus x domesticaCDS
MDP0000215486_exon_5MDP0000215486_exon_5Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000215486MDP0000215486Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000109Oligopeptide transporterPFAMPF00854PTR2coord: 108..504
score: 1.1
IPR016196Major facilitator superfamily domain, general substrate transporterSUPERFAMILY103473MFS general substrate transportercoord: 49..575
score: 7.5
NoneNo IPR availablePANTHERPTHR11654FAMILY NOT NAMEDcoord: 48..585
score: 1.2e
NoneNo IPR availablePANTHERPTHR11654:SF37OLIGOPEPTIDE TRANSPORTER-RELATEDcoord: 48..585
score: 1.2e
NoneNo IPR availableSEGsegsegcoord: 115..133
score: NAcoord: 424..436
score
NoneNo IPR availableSEGsegsegcoord: 1..12
score
NoneNo IPR availableSEGsegsegcoord: 13..28
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000215486 ID=MDP0000215486; Name=MDP0000215486; organism=Malus x domestica; type=mRNA; length=3014bp
ATGGCCACTGTGGATTCAATCAACTTCACTAATAATGAGGCTGCGCTAAA
GGTTAGTAGTCTACTGTATCAAGAGGAAAATAATATTGTTTAAAAAATAA
GTGGCACTAATTATCAAGAGGAATTAATCAATGGGACCAGAAAATATAAA
TAAGTCTGTATAGCTTAGTCCAAACTTTACATGCCCCACTTCTAAGTTCT
AATCAATTGGCCACTAATTACTGAGTAGAGGGTTTCCTACATGCTCTTGA
TGGTGTAGCAAAGACTTACATGATGGGTACACTGMCACTGTGGCTTCCTA
TTCCAATGATTGAACGACATGTGTAAGTTCTTTTTTCTTCACATGGTTTG
TATCATTGGCACGAGACGCCACAATAGCAGTGTATTGTTATGTAGGTTGC
TCTCGATGGTGCAGGGCTTACAATTGTTGTCCTTTTTATTTTATATCTTT
TACTGGCATCAGTTTCTCATAATTTTTTCAACTTGTGACTTCTTTTTCAT
CCCTTAAAAAACTAGCAGCAGGTGAGAGAAAACAATAGAGGGACTGGAGT
ACCAGAAGCTGTGAAAATAAACTTCAATGAAATTGAACATGTGGCAACTT
CCAAAAGTAAGGCATCCCTTATAAGAAAGAGCACAGGAGGGTGGAAATTT
GCAAGCCTCTTACTAGGTTTGAAGATAATCGATCACTTTTTMTTTCCATT
AACACATATATAGAGTTAATAATCAAATCTGTTTCTTATTGGTCTTATTT
TGTGCAGCGAATCAAGCCCTAGCAACACTAGCTTTTTTTGGTGTTGGAGT
GAACTTGGTTTTGTTTTTAACCAGAGTTCTTGATCAGGAGAATGCCGATG
CAGCCAACAGTGTTAGCAAGTGGACTGGAACTGTTTATTTGTGCTCCCTA
GTAGGTGCCTTTCTCAGTGACTCCTATTGGGGTCGTTACTTAACATGCAC
CATCTTCCAGCTCATCTTTGTACTGGTAATGATAATTTTCTTTTATTCTC
GAGTATAGTAGTGCGGTTRTGTGCACTTTTTGATACTCCGACCCTTATAA
GTTATAATAAGGTTGATATTGTCAATACCTTGACCCTTATAGTTGTATAT
ATGGTTGCTAATAATATATGTCATCAATAAACATTACTGCACCTGAAAAT
TGCAGTAAACCTTAACTAAGAAGGTTCTATGTGTGCGTGTGTTTTTTTTT
TCATAATTTATAAACATGTGGTTAAGCTGAATGAAATTTTATGTGACTAA
AATATCAGGGCTTGGCCTTATTATCTTTGTCATCTTGGCTCTTCTTGTTC
CATCCTTCTGGTTGCGGCRATGGAGAAACCATGTGCATGCCAGAATCCTC
AGTCGGCGTCGCGATATTTTACTTGTCCATATACTTGGTTGCATTTGGAT
ATGGTGGGTACCAACCTACTATAGCAACCTTTGGATCAGACCAGTTTGAT
GAGGCAAATCCTAAAGAGAGAGCTTCAAAAGCAGTTTTCTTTTGCTATTT
TTACTTTGCACTCAATGTTGGGTCTCTTTTCTCAAACACCATATTGGTCT
ATTATGAGGATACTGGCAAATGGACTCTAGGGTTTGTGGTGTCACTGGGA
TCTGCTGTCATAGCCCTACTGTCCTTTTTGTTAGGTACACCAAGGTATAG
GTACATAATACCATGTGGCAACCCTTTGCCGCGTATCGCTCAGGTATTCG
TTGCTGCAGCTCGAAAATGGAATATTGTTCCAGCTAACTCAGGTGACCTG
TATGAGGTGGAAGGACCAGAATCTGCAATCAAAGGGAGTCGAAAGATTTA
TCACAGTGATGAAATTGAGTAAGTATCAAACCTTTATCTCTACAAATTAT
ATATATAAACTTCTAATAAAAACCATAACTGGGGAGACGCTACACAAATA
ATTAAGGGGCACCAACCCATTTTTCATATGCASCATATTGTCGATTTAGT
GTGCCCCCAGTTCTCTTTTGATTAAAATTTGTAACAATTTATATTTGGGA
ACTTTAAMGAAAAGCCTCCGATACTGTTAACTTTAACGAAAAACCATATT
TTTACACTAAATTTATATTTGTGCATATTTCCCTAATAATATATACATAT
AGTCCACAAGTAGAGCTATGGGCAATTGGTGATTTAGAGAACTGAATGAT
ATTGTCAGGTTTTTGGACAAGGCAGCAACAATAACAGAAGATGATCTTTC
TGGCCCCAAGAATCCATGGAGGCTTTGTACTGTGACTCAAGTTGAAGAAG
CCAAATGCGTACTTAAAATGTTACCCATTTGGCTTTGCACTATAATCTAC
TCGGTGGTCTTCACACAAATGGCCTCCCTCTTTGTAGAGCAAGGGGACGT
GATGAAATCCAACTTTGGAGATTTTCACCTCCCCGCCGCTAGCATGTCTG
CTTTTGACATATGTAGTGTTCTCATTTGCACCGGAATTTATCGCCAACTT
CTAGTGCCGCTTGCTGGAAAAATAAGTGGAAACCCAAAAGGTTTATCTGA
GCTAAAAAGAATGGGGATAGGTCTAATTATTGGAATGTTATCGATGATTG
CAGCCGGTGTCACAGAGATTGCAAGGCTCAAACATGTGCAGCCTCATGAG
AAGATAAGCACTCTGAGCATATTTTGGCAAATTCCACAGTACGTTCTTGT
TGGTGCTTCAGAAGTTTTTATGTATGTTGGTCAACTGGAGTTCTTCAATG
GTCAAGCCCCAGATGGGATAAAAAGCTTTGGAAGTTCACTGTGCATGGCT
TCAATATCTCTTGGGAATTATGTGAGTAGCATGCTGGTTTACATGGTGAT
GGGGATCACAGCTAAAGGCAAAAGCCCTGGTTGGATCCCAGATGATCTGA
ATACAGGTCGCATGGACAKGTTTTACTTCCTAATTGCTGCCCTAACGGCT
TTTGATTTTGTAATTTATGTGTTTTGTGCTAAGTGGTACAAAGGCATTGA
GGTCACTAAAAAGGAAATTCAGATCATGGAAAATCAAGAAGATGTGGGGA
TCGGAAGAGTTTAG
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protein sequence of MDP0000215486

>MDP0000215486 ID=MDP0000215486; Name=MDP0000215486; organism=Malus x domestica; type=polypeptide; length=590bp
MATVDSINFTNNEAALKQVRENNRGTGVPEAVKINFNEIEHVATSKTNQA
LATLAFFGVGVNLVLFLTRVLDQENADAANSVSKWTGTVYLCSLVGAFLS
DSYWGRYLTCTIFQLIFVLGLALLSLSSWLFLFHPSGCGXGETMCMPESS
VGVAIFYLSIYLVAFGYGGYQPTIATFGSDQFDEANPKERASKAVFFCYF
YFALNVGSLFSNTILVYYEDTGKWTLGFVVSLGSAVIALLSFLLGTPRYR
YIIPCGNPLPRIAQVFVAAARKWNIVPANSGDLYEVEGPESAIKGSRKIY
HSDEIEFLDKAATITEDDLSGPKNPWRLCTVTQVEEAKCVLKMLPIWLCT
IIYSVVFTQMASLFVEQGDVMKSNFGDFHLPAASMSAFDICSVLICTGIY
RQLLVPLAGKISGNPKGLSELKRMGIGLIIGMLSMIAAGVTEIARLKHVQ
PHEKISTLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSL
CMASISLGNYVSSMLVYMVMGITAKGKSPGWIPDDLNTGRMDXFYFLIAA
LTAFDFVIYVFCAKWYKGIEVTKKEIQIMENQEDVGIGRV
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mRNA from alignment at chr3:1677622..1680635+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000215486 ID=MDP0000215486; Name=MDP0000215486; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr3:1677622..1680635+ (Malus x domestica
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mRNA from alignment at MDC017977.422:1391..4404+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000215486 ID=MDP0000215486; Name=MDP0000215486; organism=Malus x domestica; type=mRNA; length=3014bp; location=Sequence derived from: MDC017977.422:1391..4404+ (Malus x domestica
ATGGCCACTGTGGATTCAATCAACTTCACTAATAATGAGGCTGCGCTAAA
GGTTAGTAGTCTACTGTATCAAGAGGAAAATAATATTGTTTAAAAAATAA
GTGGCACTAATTATCAAGAGGAATTAATCAATGGGACCAGAAAATATAAA
TAAGTCTGTATAGCTTAGTCCAAACTTTACATGCCCCACTTCTAAGTTCT
AATCAATTGGCCACTAATTACTGAGTAGAGGGTTTCCTACATGCTCTTGA
TGGTGTAGCAAAGACTTACATGATGGGTACACTGMCACTGTGGCTTCCTA
TTCCAATGATTGAACGACATGTGTAAGTTCTTTTTTCTTCACATGGTTTG
TATCATTGGCACGAGACGCCACAATAGCAGTGTATTGTTATGTAGGTTGC
TCTCGATGGTGCAGGGCTTACAATTGTTGTCCTTTTTATTTTATATCTTT
TACTGGCATCAGTTTCTCATAATTTTTTCAACTTGTGACTTCTTTTTCAT
CCCTTAAAAAACTAGCAGCAGGTGAGAGAAAACAATAGAGGGACTGGAGT
ACCAGAAGCTGTGAAAATAAACTTCAATGAAATTGAACATGTGGCAACTT
CCAAAAGTAAGGCATCCCTTATAAGAAAGAGCACAGGAGGGTGGAAATTT
GCAAGCCTCTTACTAGGTTTGAAGATAATCGATCACTTTTTMTTTCCATT
AACACATATATAGAGTTAATAATCAAATCTGTTTCTTATTGGTCTTATTT
TGTGCAGCGAATCAAGCCCTAGCAACACTAGCTTTTTTTGGTGTTGGAGT
GAACTTGGTTTTGTTTTTAACCAGAGTTCTTGATCAGGAGAATGCCGATG
CAGCCAACAGTGTTAGCAAGTGGACTGGAACTGTTTATTTGTGCTCCCTA
GTAGGTGCCTTTCTCAGTGACTCCTATTGGGGTCGTTACTTAACATGCAC
CATCTTCCAGCTCATCTTTGTACTGGTAATGATAATTTTCTTTTATTCTC
GAGTATAGTAGTGCGGTTRTGTGCACTTTTTGATACTCCGACCCTTATAA
GTTATAATAAGGTTGATATTGTCAATACCTTGACCCTTATAGTTGTATAT
ATGGTTGCTAATAATATATGTCATCAATAAACATTACTGCACCTGAAAAT
TGCAGTAAACCTTAACTAAGAAGGTTCTATGTGTGCGTGTGTTTTTTTTT
TCATAATTTATAAACATGTGGTTAAGCTGAATGAAATTTTATGTGACTAA
AATATCAGGGCTTGGCCTTATTATCTTTGTCATCTTGGCTCTTCTTGTTC
CATCCTTCTGGTTGCGGCRATGGAGAAACCATGTGCATGCCAGAATCCTC
AGTCGGCGTCGCGATATTTTACTTGTCCATATACTTGGTTGCATTTGGAT
ATGGTGGGTACCAACCTACTATAGCAACCTTTGGATCAGACCAGTTTGAT
GAGGCAAATCCTAAAGAGAGAGCTTCAAAAGCAGTTTTCTTTTGCTATTT
TTACTTTGCACTCAATGTTGGGTCTCTTTTCTCAAACACCATATTGGTCT
ATTATGAGGATACTGGCAAATGGACTCTAGGGTTTGTGGTGTCACTGGGA
TCTGCTGTCATAGCCCTACTGTCCTTTTTGTTAGGTACACCAAGGTATAG
GTACATAATACCATGTGGCAACCCTTTGCCGCGTATCGCTCAGGTATTCG
TTGCTGCAGCTCGAAAATGGAATATTGTTCCAGCTAACTCAGGTGACCTG
TATGAGGTGGAAGGACCAGAATCTGCAATCAAAGGGAGTCGAAAGATTTA
TCACAGTGATGAAATTGAGTAAGTATCAAACCTTTATCTCTACAAATTAT
ATATATAAACTTCTAATAAAAACCATAACTGGGGAGACGCTACACAAATA
ATTAAGGGGCACCAACCCATTTTTCATATGCASCATATTGTCGATTTAGT
GTGCCCCCAGTTCTCTTTTGATTAAAATTTGTAACAATTTATATTTGGGA
ACTTTAAMGAAAAGCCTCCGATACTGTTAACTTTAACGAAAAACCATATT
TTTACACTAAATTTATATTTGTGCATATTTCCCTAATAATATATACATAT
AGTCCACAAGTAGAGCTATGGGCAATTGGTGATTTAGAGAACTGAATGAT
ATTGTCAGGTTTTTGGACAAGGCAGCAACAATAACAGAAGATGATCTTTC
TGGCCCCAAGAATCCATGGAGGCTTTGTACTGTGACTCAAGTTGAAGAAG
CCAAATGCGTACTTAAAATGTTACCCATTTGGCTTTGCACTATAATCTAC
TCGGTGGTCTTCACACAAATGGCCTCCCTCTTTGTAGAGCAAGGGGACGT
GATGAAATCCAACTTTGGAGATTTTCACCTCCCCGCCGCTAGCATGTCTG
CTTTTGACATATGTAGTGTTCTCATTTGCACCGGAATTTATCGCCAACTT
CTAGTGCCGCTTGCTGGAAAAATAAGTGGAAACCCAAAAGGTTTATCTGA
GCTAAAAAGAATGGGGATAGGTCTAATTATTGGAATGTTATCGATGATTG
CAGCCGGTGTCACAGAGATTGCAAGGCTCAAACATGTGCAGCCTCATGAG
AAGATAAGCACTCTGAGCATATTTTGGCAAATTCCACAGTACGTTCTTGT
TGGTGCTTCAGAAGTTTTTATGTATGTTGGTCAACTGGAGTTCTTCAATG
GTCAAGCCCCAGATGGGATAAAAAGCTTTGGAAGTTCACTGTGCATGGCT
TCAATATCTCTTGGGAATTATGTGAGTAGCATGCTGGTTTACATGGTGAT
GGGGATCACAGCTAAAGGCAAAAGCCCTGGTTGGATCCCAGATGATCTGA
ATACAGGTCGCATGGACAKGTTTTACTTCCTAATTGCTGCCCTAACGGCT
TTTGATTTTGTAATTTATGTGTTTTGTGCTAAGTGGTACAAAGGCATTGA
GGTCACTAAAAAGGAAATTCAGATCATGGAAAATCAAGAAGATGTGGGGA
TCGGAAGAGTTTAG
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Coding sequence (CDS) from alignment at MDC017977.422:1391..4404+

>MDP0000215486 ID=MDP0000215486; Name=MDP0000215486; organism=Malus x domestica; type=CDS; length=1773bp; location=Sequence derived from: MDC017977.422:1391..4404+ (Malus x domestica
ATGGCCACTGTGGATTCAATCAACTTCACTAATAATGAGGCTGCGCTAAA
GCAGGTGAGAGAAAACAATAGAGGGACTGGAGTACCAGAAGCTGTGAAAA
TAAACTTCAATGAAATTGAACATGTGGCAACTTCCAAAACGAATCAAGCC
CTAGCAACACTAGCTTTTTTTGGTGTTGGAGTGAACTTGGTTTTGTTTTT
AACCAGAGTTCTTGATCAGGAGAATGCCGATGCAGCCAACAGTGTTAGCA
AGTGGACTGGAACTGTTTATTTGTGCTCCCTAGTAGGTGCCTTTCTCAGT
GACTCCTATTGGGGTCGTTACTTAACATGCACCATCTTCCAGCTCATCTT
TGTACTGGGCTTGGCCTTATTATCTTTGTCATCTTGGCTCTTCTTGTTCC
ATCCTTCTGGTTGCGGCRATGGAGAAACCATGTGCATGCCAGAATCCTCA
GTCGGCGTCGCGATATTTTACTTGTCCATATACTTGGTTGCATTTGGATA
TGGTGGGTACCAACCTACTATAGCAACCTTTGGATCAGACCAGTTTGATG
AGGCAAATCCTAAAGAGAGAGCTTCAAAAGCAGTTTTCTTTTGCTATTTT
TACTTTGCACTCAATGTTGGGTCTCTTTTCTCAAACACCATATTGGTCTA
TTATGAGGATACTGGCAAATGGACTCTAGGGTTTGTGGTGTCACTGGGAT
CTGCTGTCATAGCCCTACTGTCCTTTTTGTTAGGTACACCAAGGTATAGG
TACATAATACCATGTGGCAACCCTTTGCCGCGTATCGCTCAGGTATTCGT
TGCTGCAGCTCGAAAATGGAATATTGTTCCAGCTAACTCAGGTGACCTGT
ATGAGGTGGAAGGACCAGAATCTGCAATCAAAGGGAGTCGAAAGATTTAT
CACAGTGATGAAATTGAGTTTTTGGACAAGGCAGCAACAATAACAGAAGA
TGATCTTTCTGGCCCCAAGAATCCATGGAGGCTTTGTACTGTGACTCAAG
TTGAAGAAGCCAAATGCGTACTTAAAATGTTACCCATTTGGCTTTGCACT
ATAATCTACTCGGTGGTCTTCACACAAATGGCCTCCCTCTTTGTAGAGCA
AGGGGACGTGATGAAATCCAACTTTGGAGATTTTCACCTCCCCGCCGCTA
GCATGTCTGCTTTTGACATATGTAGTGTTCTCATTTGCACCGGAATTTAT
CGCCAACTTCTAGTGCCGCTTGCTGGAAAAATAAGTGGAAACCCAAAAGG
TTTATCTGAGCTAAAAAGAATGGGGATAGGTCTAATTATTGGAATGTTAT
CGATGATTGCAGCCGGTGTCACAGAGATTGCAAGGCTCAAACATGTGCAG
CCTCATGAGAAGATAAGCACTCTGAGCATATTTTGGCAAATTCCACAGTA
CGTTCTTGTTGGTGCTTCAGAAGTTTTTATGTATGTTGGTCAACTGGAGT
TCTTCAATGGTCAAGCCCCAGATGGGATAAAAAGCTTTGGAAGTTCACTG
TGCATGGCTTCAATATCTCTTGGGAATTATGTGAGTAGCATGCTGGTTTA
CATGGTGATGGGGATCACAGCTAAAGGCAAAAGCCCTGGTTGGATCCCAG
ATGATCTGAATACAGGTCGCATGGACAKGTTTTACTTCCTAATTGCTGCC
CTAACGGCTTTTGATTTTGTAATTTATGTGTTTTGTGCTAAGTGGTACAA
AGGCATTGAGGTCACTAAAAAGGAAATTCAGATCATGGAAAATCAAGAAG
ATGTGGGGATCGGAAGAGTTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000109POT_fam
IPR016196Major facilitator superfamily domain, general substrate transporter
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006857oligopeptide transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane