MDP0000231890, MDP0000231890 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000231890
Unique Name	MDP0000231890
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	2350

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr4	chromosome	chr4:17492424..17494773 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC013675.277	contig	MDC013675.277:25065..27414 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000231890_exon_1	MDP0000231890_exon_1	Malus x domestica	CDS
MDP0000231890_exon_2	MDP0000231890_exon_2	Malus x domestica	CDS
MDP0000231890_exon_3	MDP0000231890_exon_3	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000231890	MDP0000231890	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	Ring finger	coord: 108..149 score: 5.5
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 108..150 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	no description	coord: 106..153 score: 6.8
None	No IPR available	PANTHER	PTHR22765	FAMILY NOT NAMED	coord: 32..150 score: 5.9
None	No IPR available	PANTHER	PTHR22765:SF22	OS05G0478000 PROTEIN	coord: 32..150 score: 5.9
None	No IPR available	PFAM	PF13639	zf-RING_2	coord: 107..151 score: 1.1
None	No IPR available	SEG	seg	seg	coord: 38..51 score: NAcoord: 159..169 score: NAcoord: 174..191 score: NAcoord: 192..212 score
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 82..156 score: 1.6
None	No IPR available	SEG	seg	seg	coord: 28..42 score
None	No IPR available	SEG	seg	seg	coord: 35..45 score
None	No IPR available	SEG	seg	seg	coord: 3..19 score
None	No IPR available	SEG	seg	seg	coord: 86..101 score
None	No IPR available	SEG	seg	seg	coord: 14..41 score: NAcoord: 44..83 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:17492424..17494773-
mRNA from alignment at MDC013675.277:25065..27414-
coding sequence from alignment at MDC013675.277:25065..27414-

mRNA sequence

>MDP0000231890 ID=MDP0000231890; Name=MDP0000231890; organism=Malus x domestica; type=mRNA; length=2350bp
ATGCATCGACATCTCCTYGGAACAGAGGTYAACACGGCGGCGCCGTTGTC
CAATGGAAACAGAGCCGCCGATTCGTACGTTAGCGAGGCCAAGTTCGACA
CCAACATGGTGATCATATTGGCTGCCTTATTGTGTGCTTTGATATGCGCA
CTTGGTCTCAATTCGTTCGTCCGCTGCGCCCTCCGCTGCAGCCACAGGTT
CGCTCTCGAGACGCCGGAGCAGGCGGCTGCGCAGTTGGCCGCCACCGGCT
TGAAGAAGAGGCATTTAAGGCAAATCCCAATTGCGGTGTACGGCTCCGGC
GTGAATATTCCGGCCACCGAATGCCCCATCTGTCTTGCGGAGTTCGAAGA
CGGAGAAAAAGTTCGAGTCTTGCCGAAATGCCATCACGGATTCCACGTGA
GGTGCATAGACACGTGGCTTTTGTCGCACTCGTCGTGCCCGAATTGTCGG
CATTCGCTGCTGAGTACTAGTTCTGCTGCCCCGGCCGCCGCTGCTGTTGC
GGCTGCAGATTCAACYCAAGAAGCTAATGCGGCGGCGGAGGGGTCATCGG
CAGCCGCCACCAACGAGTCCAGCCAGCAAGGTGGCAGAGTAGTCGTAGTG
GTTGAGCAGGGGACTTAAACTTTGCCAATTGGCCAAAAGTCATAAACTTT
TATTGTTTTATGAAATTTATGGATCTAATTTTGTGGAGGCCAATCAGCAA
TTAGGAAATAATGGGAGTTTTTCACTTTTATTTATTTAATATATCATACA
AAGAGCAGTMTGAGTTCATATCACTATGATGAACTATGTCTTCTGATGCA
CTTCTCTGATCATATGTATATTTCAGTTGATAATTAATCAAATCAAAAAT
CAAATGAACCAATGTTTATTAAGATTTGCAAATTCATAGTCAATTTTTAA
TTAAACAAAGTTTGCGRGCAGAACCTTCGACAGGTTTGGAAGTTCTCATA
TAGGGRTAAGCACTAAGGTCAGTGAGATCAAAATATACGAGGAGGAYATT
CYTTTGTAAGTGGTTYATGGATGACGTGTCYATGCACCAAATTTTTCTTG
AATTGGAGGAACACTAAACAATGAATGAAATGGACACTAARTTGCATTMT
ATGTTTATTATTTAGTGTCATGAAATTGGGWAGAMGAACTWAWRAGGTTT
AGTTCAAWTTTTTTGTRTGGACAAAAGAGGTTTAGTCATATCGTGGTYCA
ATTATACATTTATAGAATKGTGAGTTGGAACGGACTTTATTCCCATMACC
ATAAATTATCCGAGTGAGGATCCTCGCCGGCCTTTTTGTGAGGATTCCGA
TGATCCTTAAATCATATCCGTTCATCGTATATCGTGCTGTCATATATTAT
CGTAAATTTTTTTATTTAAAATTGAATATAAACAGTACCTGACRAAAACT
AACCACACGATATACAATGAACGAATGTGATTGGAARATTCCTGAGATCC
TCACAAAGATGATCCGTCGAGGATCCTCTCTCAAATTATCCCAAAGCCAA
CCGATMCACGACTAAAAGTGGAGCTCCTCCCCTCATCTTTGTACTTCAAA
CYAAAAACTTGTATCACTGGTCCTATGTGCAAGAGGATCTCCTCCCTTWT
ATCTGCTTGGCTTTCTTTAGATTTTTTTCTCTCCAAAGTAAAAATATCAA
GACAAGTAGAGCGTTCATTCCCTAAAAACAAAAATTGTAATCTTTCGAAC
TGATTTTATACACCTTGGCAATAATAAGTGCTGAGTTTAACACTTGTTAA
CTAGTTTTTAGTCTACTGTTACGTTTCTTCTTAATGTTGAAAGGAATCCT
AAGTTCGAATCTCATTTTTCATTGATAAAAGAAAAACGCAGCTACAGAGT
ATCTTAGAAATTGATGAAGCCGGATATTGGGTCGTTTAAATGTAATTTTG
ATGTGGCATAGGACGAACAAAKGGGTGTTGGTGGTGTTGGGGTGGTGATT
CRGAGCGATAGGGGTGACTTTGTGGCAGCTATTGCAACTAGGCATGTCGC
TATTTCCTCTCCTCAGCTGGCCGACACTATGGCAGCTAGGGATGCGGTTT
TTTGGTCAAGGAGAGGCAACTACAGGCTGCGGTGTTTGAAGGTGATGCAT
TGCTTGTTATGGTAGCCCMACAACAWGATGGTCATGAGGACTTTTCGCTG
TTCGGAATATTCTAAATGATACTCGATCGTTGATTCATTCATTGCCCCAG
TAGTGGAGGATTGGTTACAGCRGAAGGRAGACGAATAAAGTGGCGCACAG
ATTAACACGGATGAGTCTGAGTAATGAGAATTTTATTCTTTGGTTTGAAA
AMCCTCCTRATGTAATTGTGGACCTTCTCTTTGAGRATAGTTTTTCTTAA

protein sequence of MDP0000231890

>MDP0000231890 ID=MDP0000231890; Name=MDP0000231890; organism=Malus x domestica; type=polypeptide; length=308bp
MHRHLLGTEVNTAAPLSNGNRAADSYVSEAKFDTNMVIILAALLCALICA
LGLNSFVRCALRCSHRFALETPEQAAAQLAATGLKKRHLRQIPIAVYGSG
VNIPATECPICLAEFEDGEKVRVLPKCHHGFHVRCIDTWLLSHSSCPNCR
HSLLSTSSAAPAAAAVAAADSTQEANAAAEGSSAAATNESSQQGGRVVVV
DEQXGVGGVGVVIXSDRGDFVAAIATRHVAISSPQLADTMAARDAVFWSR
RGNYRLRCLKWRIGYSXRXTNKVAHRLTRMSLSNENFILWFEXPPXVIVD
LLFEXSFS

mRNA from alignment at chr4:17492424..17494773-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000231890 ID=MDP0000231890; Name=MDP0000231890; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr4:17492424..17494773- (Malus x domestica

mRNA from alignment at MDC013675.277:25065..27414-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000231890 ID=MDP0000231890; Name=MDP0000231890; organism=Malus x domestica; type=mRNA; length=2350bp; location=Sequence derived from: MDC013675.277:25065..27414- (Malus x domestica
ATGCATCGACATCTCCTYGGAACAGAGGTYAACACGGCGGCGCCGTTGTC
CAATGGAAACAGAGCCGCCGATTCGTACGTTAGCGAGGCCAAGTTCGACA
CCAACATGGTGATCATATTGGCTGCCTTATTGTGTGCTTTGATATGCGCA
CTTGGTCTCAATTCGTTCGTCCGCTGCGCCCTCCGCTGCAGCCACAGGTT
CGCTCTCGAGACGCCGGAGCAGGCGGCTGCGCAGTTGGCCGCCACCGGCT
TGAAGAAGAGGCATTTAAGGCAAATCCCAATTGCGGTGTACGGCTCCGGC
GTGAATATTCCGGCCACCGAATGCCCCATCTGTCTTGCGGAGTTCGAAGA
CGGAGAAAAAGTTCGAGTCTTGCCGAAATGCCATCACGGATTCCACGTGA
GGTGCATAGACACGTGGCTTTTGTCGCACTCGTCGTGCCCGAATTGTCGG
CATTCGCTGCTGAGTACTAGTTCTGCTGCCCCGGCCGCCGCTGCTGTTGC
GGCTGCAGATTCAACYCAAGAAGCTAATGCGGCGGCGGAGGGGTCATCGG
CAGCCGCCACCAACGAGTCCAGCCAGCAAGGTGGCAGAGTAGTCGTAGTG
GTTGAGCAGGGGACTTAAACTTTGCCAATTGGCCAAAAGTCATAAACTTT
TATTGTTTTATGAAATTTATGGATCTAATTTTGTGGAGGCCAATCAGCAA
TTAGGAAATAATGGGAGTTTTTCACTTTTATTTATTTAATATATCATACA
AAGAGCAGTMTGAGTTCATATCACTATGATGAACTATGTCTTCTGATGCA
CTTCTCTGATCATATGTATATTTCAGTTGATAATTAATCAAATCAAAAAT
CAAATGAACCAATGTTTATTAAGATTTGCAAATTCATAGTCAATTTTTAA
TTAAACAAAGTTTGCGRGCAGAACCTTCGACAGGTTTGGAAGTTCTCATA
TAGGGRTAAGCACTAAGGTCAGTGAGATCAAAATATACGAGGAGGAYATT
CYTTTGTAAGTGGTTYATGGATGACGTGTCYATGCACCAAATTTTTCTTG
AATTGGAGGAACACTAAACAATGAATGAAATGGACACTAARTTGCATTMT
ATGTTTATTATTTAGTGTCATGAAATTGGGWAGAMGAACTWAWRAGGTTT
AGTTCAAWTTTTTTGTRTGGACAAAAGAGGTTTAGTCATATCGTGGTYCA
ATTATACATTTATAGAATKGTGAGTTGGAACGGACTTTATTCCCATMACC
ATAAATTATCCGAGTGAGGATCCTCGCCGGCCTTTTTGTGAGGATTCCGA
TGATCCTTAAATCATATCCGTTCATCGTATATCGTGCTGTCATATATTAT
CGTAAATTTTTTTATTTAAAATTGAATATAAACAGTACCTGACRAAAACT
AACCACACGATATACAATGAACGAATGTGATTGGAARATTCCTGAGATCC
TCACAAAGATGATCCGTCGAGGATCCTCTCTCAAATTATCCCAAAGCCAA
CCGATMCACGACTAAAAGTGGAGCTCCTCCCCTCATCTTTGTACTTCAAA
CYAAAAACTTGTATCACTGGTCCTATGTGCAAGAGGATCTCCTCCCTTWT
ATCTGCTTGGCTTTCTTTAGATTTTTTTCTCTCCAAAGTAAAAATATCAA
GACAAGTAGAGCGTTCATTCCCTAAAAACAAAAATTGTAATCTTTCGAAC
TGATTTTATACACCTTGGCAATAATAAGTGCTGAGTTTAACACTTGTTAA
CTAGTTTTTAGTCTACTGTTACGTTTCTTCTTAATGTTGAAAGGAATCCT
AAGTTCGAATCTCATTTTTCATTGATAAAAGAAAAACGCAGCTACAGAGT
ATCTTAGAAATTGATGAAGCCGGATATTGGGTCGTTTAAATGTAATTTTG
ATGTGGCATAGGACGAACAAAKGGGTGTTGGTGGTGTTGGGGTGGTGATT
CRGAGCGATAGGGGTGACTTTGTGGCAGCTATTGCAACTAGGCATGTCGC
TATTTCCTCTCCTCAGCTGGCCGACACTATGGCAGCTAGGGATGCGGTTT
TTTGGTCAAGGAGAGGCAACTACAGGCTGCGGTGTTTGAAGGTGATGCAT
TGCTTGTTATGGTAGCCCMACAACAWGATGGTCATGAGGACTTTTCGCTG
TTCGGAATATTCTAAATGATACTCGATCGTTGATTCATTCATTGCCCCAG
TAGTGGAGGATTGGTTACAGCRGAAGGRAGACGAATAAAGTGGCGCACAG
ATTAACACGGATGAGTCTGAGTAATGAGAATTTTATTCTTTGGTTTGAAA
AMCCTCCTRATGTAATTGTGGACCTTCTCTTTGAGRATAGTTTTTCTTAA

Coding sequence (CDS) from alignment at MDC013675.277:25065..27414-

>MDP0000231890 ID=MDP0000231890; Name=MDP0000231890; organism=Malus x domestica; type=CDS; length=927bp; location=Sequence derived from: MDC013675.277:25065..27414- (Malus x domestica
ATGCATCGACATCTCCTYGGAACAGAGGTYAACACGGCGGCGCCGTTGTC
CAATGGAAACAGAGCCGCCGATTCGTACGTTAGCGAGGCCAAGTTCGACA
CCAACATGGTGATCATATTGGCTGCCTTATTGTGTGCTTTGATATGCGCA
CTTGGTCTCAATTCGTTCGTCCGCTGCGCCCTCCGCTGCAGCCACAGGTT
CGCTCTCGAGACGCCGGAGCAGGCGGCTGCGCAGTTGGCCGCCACCGGCT
TGAAGAAGAGGCATTTAAGGCAAATCCCAATTGCGGTGTACGGCTCCGGC
GTGAATATTCCGGCCACCGAATGCCCCATCTGTCTTGCGGAGTTCGAAGA
CGGAGAAAAAGTTCGAGTCTTGCCGAAATGCCATCACGGATTCCACGTGA
GGTGCATAGACACGTGGCTTTTGTCGCACTCGTCGTGCCCGAATTGTCGG
CATTCGCTGCTGAGTACTAGTTCTGCTGCCCCGGCCGCCGCTGCTGTTGC
GGCTGCAGATTCAACYCAAGAAGCTAATGCGGCGGCGGAGGGGTCATCGG
CAGCCGCCACCAACGAGTCCAGCCAGCAAGGTGGCAGAGTAGTCGTAGTG
GACGAACAAAKGGGTGTTGGTGGTGTTGGGGTGGTGATTCRGAGCGATAG
GGGTGACTTTGTGGCAGCTATTGCAACTAGGCATGTCGCTATTTCCTCTC
CTCAGCTGGCCGACACTATGGCAGCTAGGGATGCGGTTTTTTGGTCAAGG
AGAGGCAACTACAGGCTGCGGTGTTTGAAGTGGAGGATTGGTTACAGCRG
AAGGRAGACGAATAAAGTGGCGCACAGATTAACACGGATGAGTCTGAGTA
ATGAGAATTTTATTCTTTGGTTTGAAAAMCCTCCTRATGTAATTGTGGAC
CTTCTCTTTGAGRATAGTTTTTCTTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding