MDP0000247371, MDP0000247371 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000247371
Unique NameMDP0000247371
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length651
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000247371_exon_1MDP0000247371_exon_1Malus x domesticaCDS


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184Ring fingercoord: 129..170
score: 4.1
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 129..171
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10no descriptioncoord: 127..174
score: 8.1
NoneNo IPR availablePANTHERPTHR22765FAMILY NOT NAMEDcoord: 53..193
score: 2.5
NoneNo IPR availablePANTHERPTHR22765:SF22OS05G0478000 PROTEINcoord: 53..193
score: 2.5
NoneNo IPR availablePFAMPF13639zf-RING_2coord: 128..172
score: 2.7
NoneNo IPR availableSEGsegsegcoord: 4..14
score: NAcoord: 59..74
score
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 103..177
score: 1.4
NoneNo IPR availableSEGsegsegcoord: 23..39
score
NoneNo IPR availableSEGsegsegcoord: 9..20
score
NoneNo IPR availableSEGsegsegcoord: 42..55
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000247371 ID=MDP0000247371; Name=MDP0000247371; organism=Malus x domestica; type=mRNA; length=651bp
ATGGCATCTCTTCATCACCACCGTCCACACCGCCTACTTCTAGAACCAAT
ATCAACGACACCAGCATCACCAGCCAGCGGAAGCAGGACACGTGGCAATC
ACGCCAATGAATCCAATGGGAGCGGGACACGTGGTGCGTACGCCAATGAA
GCCAATTTTGACAGCAACATGGTCATCATCCTGGCAGCCTTGCTGTGCGC
TCTGATATTTGCATTGGGACTAAACTCAATAGTCCGGTGTGCGCTGAGAT
GCAGCAGAAGGTTCTCTCCTGAGACACCAGACGAGACGGCGGCGCGGTTG
GCGGTCACCGGGCTTAAAAAAAGCATATTGCGTCGGATTCCCATCGTGAT
ATATGGGACTGGACTAAATATAGCTGCCACGGATTGTCCAATTTGCCTTG
GAGAATTTATGGACGGGCAGAAAGTGAGGCTGCTGCCGAAATGCAACCAC
GGATTTCATGCCAGGTGCATTGACACATGGTTTTTGTCACATTCGTCGTG
CCCGACTTGCCGCCATTCGTTGCTTGAGCCGCCGGCTGCGGGCAGTTCGG
ATTCGGCCGAAAATGTTGGTGACGGTGGTGCTAGACATGCTGGAAATGTA
TCCTCAGGTGGACAAGGTGATGTGGCAGTCTCTGTTGATGAGGCTGGCTA
G
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mRNA from alignment at chr4:3230538..3231188-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000247371 ID=MDP0000247371; Name=MDP0000247371; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr4:3230538..3231188- (Malus x domestica
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mRNA from alignment at MDC003451.570:25706..26356-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000247371 ID=MDP0000247371; Name=MDP0000247371; organism=Malus x domestica; type=mRNA; length=651bp; location=Sequence derived from: MDC003451.570:25706..26356- (Malus x domestica
ATGGCATCTCTTCATCACCACCGTCCACACCGCCTACTTCTAGAACCAAT
ATCAACGACACCAGCATCACCAGCCAGCGGAAGCAGGACACGTGGCAATC
ACGCCAATGAATCCAATGGGAGCGGGACACGTGGTGCGTACGCCAATGAA
GCCAATTTTGACAGCAACATGGTCATCATCCTGGCAGCCTTGCTGTGCGC
TCTGATATTTGCATTGGGACTAAACTCAATAGTCCGGTGTGCGCTGAGAT
GCAGCAGAAGGTTCTCTCCTGAGACACCAGACGAGACGGCGGCGCGGTTG
GCGGTCACCGGGCTTAAAAAAAGCATATTGCGTCGGATTCCCATCGTGAT
ATATGGGACTGGACTAAATATAGCTGCCACGGATTGTCCAATTTGCCTTG
GAGAATTTATGGACGGGCAGAAAGTGAGGCTGCTGCCGAAATGCAACCAC
GGATTTCATGCCAGGTGCATTGACACATGGTTTTTGTCACATTCGTCGTG
CCCGACTTGCCGCCATTCGTTGCTTGAGCCGCCGGCTGCGGGCAGTTCGG
ATTCGGCCGAAAATGTTGGTGACGGTGGTGCTAGACATGCTGGAAATGTA
TCCTCAGGTGGACAAGGTGATGTGGCAGTCTCTGTTGATGAGGCTGGCTA
G
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Coding sequence (CDS) from alignment at MDC003451.570:25706..26356-

>MDP0000247371 ID=MDP0000247371; Name=MDP0000247371; organism=Malus x domestica; type=CDS; length=651bp; location=Sequence derived from: MDC003451.570:25706..26356- (Malus x domestica
ATGGCATCTCTTCATCACCACCGTCCACACCGCCTACTTCTAGAACCAAT
ATCAACGACACCAGCATCACCAGCCAGCGGAAGCAGGACACGTGGCAATC
ACGCCAATGAATCCAATGGGAGCGGGACACGTGGTGCGTACGCCAATGAA
GCCAATTTTGACAGCAACATGGTCATCATCCTGGCAGCCTTGCTGTGCGC
TCTGATATTTGCATTGGGACTAAACTCAATAGTCCGGTGTGCGCTGAGAT
GCAGCAGAAGGTTCTCTCCTGAGACACCAGACGAGACGGCGGCGCGGTTG
GCGGTCACCGGGCTTAAAAAAAGCATATTGCGTCGGATTCCCATCGTGAT
ATATGGGACTGGACTAAATATAGCTGCCACGGATTGTCCAATTTGCCTTG
GAGAATTTATGGACGGGCAGAAAGTGAGGCTGCTGCCGAAATGCAACCAC
GGATTTCATGCCAGGTGCATTGACACATGGTTTTTGTCACATTCGTCGTG
CCCGACTTGCCGCCATTCGTTGCTTGAGCCGCCGGCTGCGGGCAGTTCGG
ATTCGGCCGAAAATGTTGGTGACGGTGGTGCTAGACATGCTGGAAATGTA
TCCTCAGGTGGACAAGGTGATGTGGCAGTCTCTGTTGATGAGGCTGGCTA
G
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding