MDP0000253638, MDP0000253638 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000253638
Unique NameMDP0000253638
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length3946
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.02012-04-02
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000253638_exon_1MDP0000253638_exon_1Malus x domesticaCDS
MDP0000253638_exon_2MDP0000253638_exon_2Malus x domesticaCDS
MDP0000253638_exon_3MDP0000253638_exon_3Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000253638MDP0000253638Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005067Fatty acid desaturase, type 2PIRPIRSF000346Delta-9 acyl-ACP desaturasecoord: 1..393
score: 1.9e
IPR005067Fatty acid desaturase, type 2PFAMPF03405FA_desaturase_2coord: 63..391
score: 3.7e
IPR005803Stearoyl-ACP desaturase, conserved sitePROSITEPS00574FATTY_ACID_DESATUR_2coord: 313..332
score
IPR009078Ferritin/ribonucleotide reductase-likeSUPERFAMILY47240Ferritin-likecoord: 49..393
score: 3.4e
IPR012348Ribonucleotide reductase-relatedGENE3D1.10.620.20no descriptioncoord: 50..392
score: 2.4e
NoneNo IPR availableSEGsegsegcoord: 52..63
score
IPR002328Alcohol dehydrogenase, zinc-type, conserved sitePROSITEPS00059ADH_ZINCcoord: 30..44
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000253638 ID=MDP0000253638; Name=MDP0000253638; organism=Malus x domestica; type=mRNA; length=3946bp
ATGGCTGTGAGTCTGAATTCGATGCTGACCTTCCCGTCTCACAGCCTCAC
TGCCAAGTCCCACAATCTCAGATCTCCCAAAATATTCATGGCCTCCACTC
TTCACTCCTCCWCCAAGTGAGTTTCCTTCTATTCAATTCATTTCTGCATT
TTCATCGCATGCGTGCGCGGCTGATCATCTTGGGTTCTCGGATGCCCACT
TGGCGAAAATGCAAATGGGTATCGCCAAGAACGAGTTTTTAACCATTCTG
CTGATCTGGGTTTTTACTTTGCTAAAGGTTTATGCTAATTCAGCTGAATA
GGGGATGTTTTTGGATTTCTGGGCTTCTATTTTGCGTTAATCTCATTCAT
TTTGAGAAATATTTTGTTGTTATTGAGGTTAGTGAACGTAATTGAAATTT
ATCTTATTCCTATTTTATTTTTTTGTTTAATTTTTGGGAACTGGTTGTTA
GCCAATTCCTCTTTTCTTTCACCTGCATGCATGGTTCTCAGTTCAATTTT
TGCTGCAGGACATATAAAAGAACTAATGATGATTGGATGTTTTTTGAATC
TTATTTTCTGAAAAAATTAATAAAATCCTCTTCGTGCTCTTATTGCTATT
GAATATATTCTATTGATCTTGCTGGGATATTTTAAAAGTATTTCTGTTAT
TTAAGAAAATCGCCAGTAGGTTTTCTGTTTGTTGTTTTCAATCTGAAGGC
ATGCGTGTGTTATTTAACTATTTCTTACATTAGTTGAGCTGTAGATCTGA
TTTCTTGGGTTTCTCTTTCTTTTTGAACTGTGTCCTGTAAGTTGACTAGT
TTCATTTATTTAATCGATTTACTCAGTATATGTTATTTCATATACAAGTA
TAATGTATTAGTTCCCCCCATTTCTTATTTTTTTTTGTGCAATTTGTTGT
TTTGTATTTCTCCGAGTACTTGTTATCAAAGAGTTATGGAGAAAGAATAT
GGGAGAAAGGGTAAATGAAGAAAGTTGGTGGGAGGGAGAAGAAGAAACAA
AGAATAAAGGTCGTACCCAGTGCACAAGGCTCCCGCTTTACGCAGGGTCT
GGGAGAGGTGAATGTCGGCTAGCCTTACCCCCATTTATGGAGAGGCTGCT
CCCAAGTCTCGAACCYGAGACCTACCGCTCATGGGCGAAKRCACTTGCCA
TCGCACCAAGTGCGACCTCTTAAGAAGAAACAAAGAATAATTAATGAAAA
TAAAAACAGCTTTAAAATAGTTTTGGGTTTTAGTTTTCATTTTGTGTACT
TTTCCTCGTACATTTTCTCTACTTCATTCAGACAACTCTTCTTCATCCTT
CTTTCCCCATATCTCTAGCACAAAAAAGTGAACTAAAACTAAAAACTAAA
TGGCCCTTTTTGTGTGCTTAATGTTTGAGTCTACGCATTTGCTTGTTTGT
CAATTATATATCATTTTATGGGTTCGTGCAATGTAGGTTGTCAGATCATT
GTTTTCATTGTGCTAGACAATTATTCCTTATATTTTCAAGCGTTTAGGTG
TCATACTTGTTGATATGGTTAGTGGTATTCTTATTGAGATTTGCAGTGGT
ATCCATGAATCCACTATGCACATGTTCTCAAGTTTTCAGTTTTAGCTGGT
ACACCGTGAGCAACAACTATGGTTTCTTCTGTTCAATTTCACTTCTGAAT
TTGATAACTGCCTGTATATTTGATTTCTCTGTTCTGTATTGTGGTTGGTC
ATGTTTGTTCGCGTCTTCTTAGATGAGCTTACATCTCTTTTCACTCTCAC
TCTCTCTCTCCCTCTCCCTCTCCCTCTCCTCTCCACCCACCCCAATTRGC
AATCTTAGTCTCTTGCTCGGTTCCTGTTTTTGTTAACTTTGTATWACTCT
ATTTACGCTCTATCTCCCACCTCTATAYAGTTATATAGAGAACTATGAGG
TTGTTAGATTCAGTAATTGAAGCATACCAATTTTAGATCTTTTCTTCTGT
TTTTTACAGAGAGACTGAGAATCTGAAGAAGTCTTTTGGCCCTCCGCGTG
AGGTACATGTTCAGGTGACTCATTCAATGCCTCCACAACAGATTGAGATT
TTCAAGTCATTAGAGGATTGGGCTGAGAATAACATCTTGGTGCACCTAAA
GCCTGTTGAGAAATGTTGGCAACCACAAGATTTTCTTCCACTTCCCGAGT
CAGATGGATTCGAGGAGCAAGTTAAGGAGTTGAGGGAAAGAGCAAGGGAA
ATTCCTGATGATTACTTTGTTGTGTTGGTTGGTGATATGATCACAGAAGA
AGCCCTTCCAACGTACCAGACAATGCTTAATACCCTAGACGGAGTTCGGG
ATGAGACTGGTGCAAGCCTTACTTCCTGGGCTATTTGGACCAGGGCGTGG
ACTGCTGAAGAGAATAGGCATGGTGATCTTCTTAACAAGTATCTTTATCT
CTCTGGACGAGTAGATATGAGACAAATCGAGAAAACAATTCAGTACCTTA
TTGGATCTGGAATGGTGAGTTCTTTGTTTCCTCTCTTTTGGTCTGTTTTT
GTTATTTTTTGGACCCTGATATTTTTTTGAGACTTTTCTGAGTCCACGCT
TAGGAATTTCAGCATTGTAGCTAAGATTTTAAAGTTATATTAATCTTGAA
GGATACAAACTTGTGAACTAAGGGGCAATGCAATTTGTTATCTTCKTTTT
TTCTTTTACATTACTTGCTGACTGGAGTTCGGGATGCTTAAAACTTTTCA
GCTGGCATAAATATATTACAGTAGGGAAGATGAGAACAAGTTATGAAATG
TTAATAGTATAYGATGTCCTAAATTTCCGGCGTATATGGAAGACTTTCTT
TATGTTCATTTATAATACTATGCTTATGGCACCTTAGAGAACCTCTGCAT
TGTAACTGTTGTAGAATTCTAGTCTAGTTGATGCTCGAGTTTTTAAGGGT
CATGTCTAATTATCAATTCCTTGATGTAAAAAAAAAGGGATGTTTAAATT
TCTGGTGATGATTATGAACAAAATGGTTGTCTATTATCTCATGTCTGCTT
GGAAAATGAAGCATTTATGTGTGACTTATTGAGTTAACAAACTATTTCGA
GGAATAGCCATTGAGAGATTACCTTGATTAGAATGTTGTACCTGCATGAT
TGTCACTTATTTTCATGGATGTAATCTCATGAGTTATCACTACGATGATT
TAGACACACAAGCACACACATGCTGACAGAAGATTCTTAAGAAAGAACAT
CTACCCCATTCTCCCACTCTCCAATTTTGGTTGCTTGATTTAAACTCTGT
ACAGCTTAAGCTTTTTAAACATAGTTGAAATTTTCTGTTTATACTGTTAK
TACCATGACTATTGTTACTATTATTATTATAAATATTAATATTTCATTTA
TACTATTTTGGTTTTCAATTTTGCGTTTTCTGTAGGATCCTAAAACAGAG
AACAATCCCTACCTTGGGTTCATTTACACTTCATTCCAAGAGAGGGCAAC
ATTCATCTCCCATGGGAACACAGCCAGGCAAGCCAAAGAGCATGGGGACC
TGAAATTGGCTCAGATATGCGGCACCATTGCCTCGGATGAAAAGCGCCAT
GAAACTGCGTATACAAAGATTGTGGAAAAGCTGTTTGAGATTGATCCAGA
TGGCACTGTGTTGGCCTTAGCTGACATGATGAAGAAAAAGATATCAATGC
CTGCCCACTTGATGTACGATGGTCAGGATGATAATCTGTTTGATCATTTC
TCAGCTGTTGCCCAGAGGCTTGAGGTGTATACTGCCAGGGATTATGCTGA
TATATTGGAGTTTTTGGTTGGAAGATGGAATGTGGAGAAGTTGACTGGTC
TTTCTGGCGAGGGACGCATGGCGCAAGATTTTGTGTGTAAATTGCCACAG
AGAATCAGGAGGTTGGAGGAAAGAGCACAGGGAAGGGCCAAGGCTTCTTC
CCTTGTTCCATTCAGCTGGATTTTTGGTAGGGAAGTAAAGGTTTAA
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protein sequence of MDP0000253638

>MDP0000253638 ID=MDP0000253638; Name=MDP0000253638; organism=Malus x domestica; type=polypeptide; length=393bp
MAVSLNSMLTFPSHSLTAKSHNLRSPKIFMASTLHSSXKETENLKKSFGP
PREVHVQVTHSMPPQQIEIFKSLEDWAENNILVHLKPVEKCWQPQDFLPL
PESDGFEEQVKELRERAREIPDDYFVVLVGDMITEEALPTYQTMLNTLDG
VRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQ
YLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARQAKEHGDLKLAQ
ICGTIASDEKRHETAYTKIVEKLFEIDPDGTVLALADMMKKKISMPAHLM
YDGQDDNLFDHFSAVAQRLEVYTARDYADILEFLVGRWNVEKLTGLSGEG
RMAQDFVCKLPQRIRRLEERAQGRAKASSLVPFSWIFGREVKV
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mRNA from alignment at chr12:31589796..31593741-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000253638 ID=MDP0000253638; Name=MDP0000253638; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr12:31589796..31593741- (Malus x domestica
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mRNA from alignment at MDC023815.55:6647..10592-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000253638 ID=MDP0000253638; Name=MDP0000253638; organism=Malus x domestica; type=mRNA; length=3946bp; location=Sequence derived from: MDC023815.55:6647..10592- (Malus x domestica
ATGGCTGTGAGTCTGAATTCGATGCTGACCTTCCCGTCTCACAGCCTCAC TGCCAAGTCCCACAATCTCAGATCTCCCAAAATATTCATGGCCTCCACTC TTCACTCCTCCWCCAAGTGAGTTTCCTTCTATTCAATTCATTTCTGCATT TTCATCGCATGCGTGCGCGGCTGATCATCTTGGGTTCTCGGATGCCCACT TGGCGAAAATGCAAATGGGTATCGCCAAGAACGAGTTTTTAACCATTCTG CTGATCTGGGTTTTTACTTTGCTAAAGGTTTATGCTAATTCAGCTGAATA GGGGATGTTTTTGGATTTCTGGGCTTCTATTTTGCGTTAATCTCATTCAT TTTGAGAAATATTTTGTTGTTATTGAGGTTAGTGAACGTAATTGAAATTT ATCTTATTCCTATTTTATTTTTTTGTTTAATTTTTGGGAACTGGTTGTTA GCCAATTCCTCTTTTCTTTCACCTGCATGCATGGTTCTCAGTTCAATTTT TGCTGCAGGACATATAAAAGAACTAATGATGATTGGATGTTTTTTGAATC TTATTTTCTGAAAAAATTAATAAAATCCTCTTCGTGCTCTTATTGCTATT GAATATATTCTATTGATCTTGCTGGGATATTTTAAAAGTATTTCTGTTAT TTAAGAAAATCGCCAGTAGGTTTTCTGTTTGTTGTTTTCAATCTGAAGGC ATGCGTGTGTTATTTAACTATTTCTTACATTAGTTGAGCTGTAGATCTGA TTTCTTGGGTTTCTCTTTCTTTTTGAACTGTGTCCTGTAAGTTGACTAGT TTCATTTATTTAATCGATTTACTCAGTATATGTTATTTCATATACAAGTA TAATGTATTAGTTCCCCCCATTTCTTATTTTTTTTTGTGCAATTTGTTGT TTTGTATTTCTCCGAGTACTTGTTATCAAAGAGTTATGGAGAAAGAATAT GGGAGAAAGGGTAAATGAAGAAAGTTGGTGGGAGGGAGAAGAAGAAACAA AGAATAAAGGTCGTACCCAGTGCACAAGGCTCCCGCTTTACGCAGGGTCT GGGAGAGGTGAATGTCGGCTAGCCTTACCCCCATTTATGGAGAGGCTGCT CCCAAGTCTCGAACCYGAGACCTACCGCTCATGGGCGAAKRCACTTGCCA TCGCACCAAGTGCGACCTCTTAAGAAGAAACAAAGAATAATTAATGAAAA TAAAAACAGCTTTAAAATAGTTTTGGGTTTTAGTTTTCATTTTGTGTACT TTTCCTCGTACATTTTCTCTACTTCATTCAGACAACTCTTCTTCATCCTT CTTTCCCCATATCTCTAGCACAAAAAAGTGAACTAAAACTAAAAACTAAA TGGCCCTTTTTGTGTGCTTAATGTTTGAGTCTACGCATTTGCTTGTTTGT CAATTATATATCATTTTATGGGTTCGTGCAATGTAGGTTGTCAGATCATT GTTTTCATTGTGCTAGACAATTATTCCTTATATTTTCAAGCGTTTAGGTG TCATACTTGTTGATATGGTTAGTGGTATTCTTATTGAGATTTGCAGTGGT ATCCATGAATCCACTATGCACATGTTCTCAAGTTTTCAGTTTTAGCTGGT ACACCGTGAGCAACAACTATGGTTTCTTCTGTTCAATTTCACTTCTGAAT TTGATAACTGCCTGTATATTTGATTTCTCTGTTCTGTATTGTGGTTGGTC ATGTTTGTTCGCGTCTTCTTAGATGAGCTTACATCTCTTTTCACTCTCAC TCTCTCTCTCCCTCTCCCTCTCCCTCTCCTCTCCACCCACCCCAATTRGC AATCTTAGTCTCTTGCTCGGTTCCTGTTTTTGTTAACTTTGTATWACTCT ATTTACGCTCTATCTCCCACCTCTATAYAGTTATATAGAGAACTATGAGG TTGTTAGATTCAGTAATTGAAGCATACCAATTTTAGATCTTTTCTTCTGT TTTTTACAGAGAGACTGAGAATCTGAAGAAGTCTTTTGGCCCTCCGCGTG AGGTACATGTTCAGGTGACTCATTCAATGCCTCCACAACAGATTGAGATT TTCAAGTCATTAGAGGATTGGGCTGAGAATAACATCTTGGTGCACCTAAA GCCTGTTGAGAAATGTTGGCAACCACAAGATTTTCTTCCACTTCCCGAGT CAGATGGATTCGAGGAGCAAGTTAAGGAGTTGAGGGAAAGAGCAAGGGAA ATTCCTGATGATTACTTTGTTGTGTTGGTTGGTGATATGATCACAGAAGA AGCCCTTCCAACGTACCAGACAATGCTTAATACCCTAGACGGAGTTCGGG ATGAGACTGGTGCAAGCCTTACTTCCTGGGCTATTTGGACCAGGGCGTGG ACTGCTGAAGAGAATAGGCATGGTGATCTTCTTAACAAGTATCTTTATCT CTCTGGACGAGTAGATATGAGACAAATCGAGAAAACAATTCAGTACCTTA TTGGATCTGGAATGGTGAGTTCTTTGTTTCCTCTCTTTTGGTCTGTTTTT GTTATTTTTTGGACCCTGATATTTTTTTGAGACTTTTCTGAGTCCACGCT TAGGAATTTCAGCATTGTAGCTAAGATTTTAAAGTTATATTAATCTTGAA GGATACAAACTTGTGAACTAAGGGGCAATGCAATTTGTTATCTTCKTTTT TTCTTTTACATTACTTGCTGACTGGAGTTCGGGATGCTTAAAACTTTTCA GCTGGCATAAATATATTACAGTAGGGAAGATGAGAACAAGTTATGAAATG TTAATAGTATAYGATGTCCTAAATTTCCGGCGTATATGGAAGACTTTCTT TATGTTCATTTATAATACTATGCTTATGGCACCTTAGAGAACCTCTGCAT TGTAACTGTTGTAGAATTCTAGTCTAGTTGATGCTCGAGTTTTTAAGGGT CATGTCTAATTATCAATTCCTTGATGTAAAAAAAAAGGGATGTTTAAATT TCTGGTGATGATTATGAACAAAATGGTTGTCTATTATCTCATGTCTGCTT GGAAAATGAAGCATTTATGTGTGACTTATTGAGTTAACAAACTATTTCGA GGAATAGCCATTGAGAGATTACCTTGATTAGAATGTTGTACCTGCATGAT TGTCACTTATTTTCATGGATGTAATCTCATGAGTTATCACTACGATGATT TAGACACACAAGCACACACATGCTGACAGAAGATTCTTAAGAAAGAACAT CTACCCCATTCTCCCACTCTCCAATTTTGGTTGCTTGATTTAAACTCTGT ACAGCTTAAGCTTTTTAAACATAGTTGAAATTTTCTGTTTATACTGTTAK TACCATGACTATTGTTACTATTATTATTATAAATATTAATATTTCATTTA TACTATTTTGGTTTTCAATTTTGCGTTTTCTGTAGGATCCTAAAACAGAG AACAATCCCTACCTTGGGTTCATTTACACTTCATTCCAAGAGAGGGCAAC ATTCATCTCCCATGGGAACACAGCCAGGCAAGCCAAAGAGCATGGGGACC TGAAATTGGCTCAGATATGCGGCACCATTGCCTCGGATGAAAAGCGCCAT GAAACTGCGTATACAAAGATTGTGGAAAAGCTGTTTGAGATTGATCCAGA TGGCACTGTGTTGGCCTTAGCTGACATGATGAAGAAAAAGATATCAATGC CTGCCCACTTGATGTACGATGGTCAGGATGATAATCTGTTTGATCATTTC TCAGCTGTTGCCCAGAGGCTTGAGGTGTATACTGCCAGGGATTATGCTGA TATATTGGAGTTTTTGGTTGGAAGATGGAATGTGGAGAAGTTGACTGGTC TTTCTGGCGAGGGACGCATGGCGCAAGATTTTGTGTGTAAATTGCCACAG AGAATCAGGAGGTTGGAGGAAAGAGCACAGGGAAGGGCCAAGGCTTCTTC CCTTGTTCCATTCAGCTGGATTTTTGGTAGGGAAGTAAAGGTTTAA
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Coding sequence (CDS) from alignment at MDC023815.55:6647..10592-

>MDP0000253638 ID=MDP0000253638; Name=MDP0000253638; organism=Malus x domestica; type=CDS; length=1182bp; location=Sequence derived from: MDC023815.55:6647..10592- (Malus x domestica
ATGGCTGTGAGTCTGAATTCGATGCTGACCTTCCCGTCTCACAGCCTCAC
TGCCAAGTCCCACAATCTCAGATCTCCCAAAATATTCATGGCCTCCACTC
TTCACTCCTCCWCCAAAGAGACTGAGAATCTGAAGAAGTCTTTTGGCCCT
CCGCGTGAGGTACATGTTCAGGTGACTCATTCAATGCCTCCACAACAGAT
TGAGATTTTCAAGTCATTAGAGGATTGGGCTGAGAATAACATCTTGGTGC
ACCTAAAGCCTGTTGAGAAATGTTGGCAACCACAAGATTTTCTTCCACTT
CCCGAGTCAGATGGATTCGAGGAGCAAGTTAAGGAGTTGAGGGAAAGAGC
AAGGGAAATTCCTGATGATTACTTTGTTGTGTTGGTTGGTGATATGATCA
CAGAAGAAGCCCTTCCAACGTACCAGACAATGCTTAATACCCTAGACGGA
GTTCGGGATGAGACTGGTGCAAGCCTTACTTCCTGGGCTATTTGGACCAG
GGCGTGGACTGCTGAAGAGAATAGGCATGGTGATCTTCTTAACAAGTATC
TTTATCTCTCTGGACGAGTAGATATGAGACAAATCGAGAAAACAATTCAG
TACCTTATTGGATCTGGAATGGATCCTAAAACAGAGAACAATCCCTACCT
TGGGTTCATTTACACTTCATTCCAAGAGAGGGCAACATTCATCTCCCATG
GGAACACAGCCAGGCAAGCCAAAGAGCATGGGGACCTGAAATTGGCTCAG
ATATGCGGCACCATTGCCTCGGATGAAAAGCGCCATGAAACTGCGTATAC
AAAGATTGTGGAAAAGCTGTTTGAGATTGATCCAGATGGCACTGTGTTGG
CCTTAGCTGACATGATGAAGAAAAAGATATCAATGCCTGCCCACTTGATG
TACGATGGTCAGGATGATAATCTGTTTGATCATTTCTCAGCTGTTGCCCA
GAGGCTTGAGGTGTATACTGCCAGGGATTATGCTGATATATTGGAGTTTT
TGGTTGGAAGATGGAATGTGGAGAAGTTGACTGGTCTTTCTGGCGAGGGA
CGCATGGCGCAAGATTTTGTGTGTAAATTGCCACAGAGAATCAGGAGGTT
GGAGGAAAGAGCACAGGGAAGGGCCAAGGCTTCTTCCCTTGTTCCATTCA
GCTGGATTTTTGGTAGGGAAGTAAAGGTTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005067Fatty_acid_desaturase-2
IPR005803FADS-2_CS
IPR009078Ferritin-like_SF
IPR012348RNR-like
IPR002328ADH_Zn_CS
Vocabulary: Biological Process
TermDefinition
GO:0006631fatty acid metabolic process
GO:0055114obsolete oxidation-reduction process
GO:0006633fatty acid biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0045300stearoyl-[ACP] desaturase activity
GO:0016491oxidoreductase activity
GO:0046914transition metal ion binding
GO:0008270zinc ion binding