MDP0000257474, MDP0000257474 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000257474
Unique Name	MDP0000257474
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	4255

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr13	chromosome	chr13:18548459..18552713 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC004058.502	contig	MDC004058.502:1799..6053 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.0	2012-04-02

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000257474_exon_1	MDP0000257474_exon_1	Malus x domestica	CDS
MDP0000257474_exon_2	MDP0000257474_exon_2	Malus x domestica	CDS
MDP0000257474_exon_3	MDP0000257474_exon_3	Malus x domestica	CDS
MDP0000257474_exon_4	MDP0000257474_exon_4	Malus x domestica	CDS
MDP0000257474_exon_5	MDP0000257474_exon_5	Malus x domestica	CDS
MDP0000257474_exon_6	MDP0000257474_exon_6	Malus x domestica	CDS
MDP0000257474_exon_7	MDP0000257474_exon_7	Malus x domestica	CDS
MDP0000257474_exon_8	MDP0000257474_exon_8	Malus x domestica	CDS
MDP0000257474_exon_9	MDP0000257474_exon_9	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000257474	MDP0000257474	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000907	Lipoxygenase	PANTHER	PTHR11771	FAMILY NOT NAMED	coord: 58.
IPR001024	Lipoxygenase, LH2	GENE3D	2.60.60.20	no description	coord: 30..184 score: 9.8
IPR001024	Lipoxygenase, LH2	PFAM	PF01477	PLAT	coord: 81..170 score: 2.6
IPR001024	Lipoxygenase, LH2	SMART	SM00308	Lipoxygenase homology 2 (beta barrel) domain	coord: 26..172 score: 7
IPR001024	Lipoxygenase, LH2	PROFILE	PS50095	PLAT	coord: 28..171 score: 24
IPR001246	Lipoxygenase, plant	PRINTS	PR00468	PLTLPOXGNASE	coord: 141..159 score: 8.3e-59coord: 167..188 score: 8.3e-59coord: 206..222 score: 8.3e-59coord: 239..258 score: 8.3e-59coord: 483..507 score: 8.3e-59coord: 808..822 score: 8.3
IPR008976	Lipase/lipooxygenase, PLAT/LH2	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 26..175 score: 3.7
IPR013819	Lipoxygenase, C-terminal	PRINTS	PR00087	LIPOXYGENASE	coord: 533..550 score: 4.4e-24coord: 551..568 score: 4.4e-24coord: 571..591 score: 4.4
IPR013819	Lipoxygenase, C-terminal	PFAM	PF00305	Lipoxygenase	coord: 181.
IPR013819	Lipoxygenase, C-terminal	PROFILE	PS51393	LIPOXYGENASE_3	coord: 174..900 score: 305
IPR013819	Lipoxygenase, C-terminal	SUPERFAMILY	48484	Lipoxigenase	coord: 176..900 score: 3.1e
IPR020834	Lipoxygenase, conserved site	PROSITE	PS00081	LIPOXYGENASE_2	coord: 578..588 score
None	No IPR available	GENE3D	1.20.245.10	no description	coord: 550..900 score: 3.9e
None	No IPR available	GENE3D	3.10.450.60	no description	coord: 411..547 score: 3.6
None	No IPR available	GENE3D	4.10.372.10	no description	coord: 301..391 score: 6.8
None	No IPR available	GENE3D	4.10.375.10	no description	coord: 185..300 score: 2.5
None	No IPR available	PANTHER	PTHR11771:SF2	LIPOXYGENASE	coord: 58.
None	No IPR available	SEG	seg	seg	coord: 7..17 score: NAcoord: 242..260 score
None	No IPR available	SEG	seg	seg	coord: 23..34 score
None	No IPR available	SEG	seg	seg	coord: 120..133 score
None	No IPR available	SEG	seg	seg	coord: 8..41 score
None	No IPR available	SEG	seg	seg	coord: 4..16 score: NAcoord: 57..68 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:18548459..18552713-
mRNA from alignment at MDC004058.502:1799..6053-
coding sequence from alignment at MDC004058.502:1799..6053-

mRNA sequence

>MDP0000257474 ID=MDP0000257474; Name=MDP0000257474; organism=Malus x domestica; type=mRNA; length=4255bp
ATGGAAGCATRTTGTTTGAAGGACAAGGAGAAGGACAATGACGACGAGAA
GCCAGATTACATGGTGAGTGGGAGCAACAGAATCAGAGGAAAAGTTGTGT
TGATGAAGAAGAATGTGTTGGACTTCAACGACCTCAAAGCTTCRTTCGTT
GATAGAATCCATGAGCTCTTGGGCAAAGGTGTTTCCATGCAGCTCATTAG
TGCCACTCATCCTGAAGCAGCAGGTCAGTCTCTCTTCCTTCAGTTGAATC
GAATTAACAATTCACTCACTAAAATGCTTTGAGTTTTTCACACGTAAGCT
CTAAATAAACTAACTTTACATTTGAGAAAAATATATCATATCAAATCTGA
TACTTTAGAAGAAAAAWWGTTCCACTTACTTGGTAATTGGGGAGGACAAC
ATAAGAATTTCACAACTGCGAATCATTTATTGCATGACAAGTAGATAAAT
TACGAATGAGAGGTTTTCCTCCCCAATTGATCTCTTCATGTGCTTTTGTA
TAAAACTTATAGTTGTGAAGGTGTTTTCTAGTTTACTAAAATTCTTTTGT
TCAAGTTTTGAACGCATGGTTTTACTTTTAATGGGAACCCGCATAACTGG
ATACAAAGTCAAAAGCTACATATGTTGAAGAAGATAATTACTATATTAAG
ATTTTAACAGAGCTGAAATTGACATAAATTCTTATTCATGTGCAGCAAAT
GGATTGAAACCGAGAGGGAAGCTTGGAAAGGTTGCTTACCTGGAGAAATG
GGCTACAACCATTACATCGTTGTCGGCCGGTGAAACTAGTTTTACCATTT
CCTTGGATTGGGATGAGTCCCATGGAGCTCCCGGCGCTTTGCTGATCAGA
AACCATCACCATAGCCAATTCTACCTCAAGACAATAACATTAGAAGATGT
TCCCGAGCACGGTCAACTCCATTTTGTCTGCAATTCCTGGGTATACCCAG
CACATCGTTACAAGTACAATCGGATATTTTTCCCCAACAAGGTATACATT
CAGTCTGGTTAATTAACATAATGTCAAAATATAACATGCAATAGGGAGAC
ACATTTTTCACTTGTATTTTTTCTATTTAAGAATCGAAGAAATCTGGATC
TTATCTTATCCGACCCTTGTGGTCAGATTTGTCATGATTGATCCTTTTAA
TCTCTATAGTATGAAGCTTTACTGACCAAAAGTGGAAATATCACAATCCG
CTACTTTTCCAGCTGGATTAGCACTTGCACATAAAAATACCATGTTTTAY
TAATTATAAAATTTCATATCTGRTTTCATTGAACAATTTTCAGAAGTTAC
AACAAATTGGTATTTTTTCTAAATTATTGAAAGATAAATGATTTTCGCAC
ACTTTTATTTAKTTTTACTTTCTACTCCTATGATCCACCAAATGTATAAG
AGTGMAAGAAAATAAAAGAGCCGTGCTGAATCACTTCCCTGCTTAAATCT
GTGACCAATGACACGCAGAAATGCAACTTAAAAGCTATAATTTTAGCTAA
GGTACTTATGAGATTGCACTGACTGAAAACTTCATGTTTTTGTTCAGGCC
TACCTGCCATCTCAAACACCTGAGCTACTACACCCTTACAGGGAAGAAGA
ACTCGCCAATCTCCGAGGGAGTGGATCAGGCGAGCTAAAGGAGTGGGACA
GGGTCTATGACTATGCTTACTACAATGATTTAGGGAGTCCWGACAAGGGT
CCAAAATATGCCCGCCCTATACTTGGTGGGTCGTACGAGTATCCATATCC
AAGAAGAGGAAGAACTGGTCGAAAAACAACTAAAACCGGTCAGYAACCTG
AATAGTTCATTTTGCTAATTAAGTCCTGACTAAGTTAAGATATGGCGTAG
AACACGAACGACATGAAGAATTCTTACGGTTCTATGACCAATTTTCTTTC
ATGCTTCGTACAGACCCCAATTCCGAGAGCAGACTGCCGCTTCTAAGTCT
AGACATTTATGTTCCAAGAGATGAGCGGTTTGGCCACGTGAAGTTTTCCG
ATTTTCTTGCTTATGGCCTGAAATCCCTAGTTCAAATATTGCTTCCAGAA
CTCAAGTCTTTGTGTGATAAAACTATCAATGAGTTTGACACCTTTGACGA
CGTAGTTAATCTCTACGAGGGAGGTATCAAGTTACCAAATGGGCCTACAC
TGAAGAAAATAAGGGAGCGCATCCCTTGGGAGCTGCTTAAGGAACTGATT
CGCTCAGATGGCGAGCGATTTCTCAAGTTTCCAATGCCTGATGTGATTAA
AAGTACATACGTCTTTCCCCAATGACTGGTATTAGATATGCTAAATTCCT
TGAATTTTGAACATACTATCATACTAAATTGCAACGATTTCTTGATATAA
TGCAGAAGATAGGTCTGCATGGAGGACAGATAAAGAATTTGGRCGAGAAA
TGCTAGCAGGAGTGAACCCTGTTAACATCACCCGCCTCAAAGTAAAATAC
AAGTTTCCCTGATTCATTTGACTATTATAGYGATAAGGATACGTTCCAAG
TTTGTTCAAATAACCATCGAAATTCTAACTACAGGAGTTTCCCCCAGTCA
GTAAGCTAGACCCTAAAGTATATGGGAATCAGAACAGTTCGATACGAGAA
GAGYACATAAAAGGCAACATGAATGRCCTCACTGTTGAAGAGGTACTGCT
GATGCTTCATTTGTCTCCAATATATTAATCCAATGTTTTTTTTAAATGTA
TCTACTGAAATTATCATTTTTGTCCCTTTTTGCACAGGCAACTGAAAAGA
ACAGGCTATTCATATTAGATCATCATGATGCATTAATGTTATACCTGAGG
CAAATAAACTCAACGGACACAAAGACGTATGCCACAAGAACTCTCCTCTT
GCTGCAAGAAGACGGGACGTTGAAGCCTTTGGCAATTGAGCTAAGCTTAC
CACATCCACAAGGGGACCGTCATGGGGCTGTCAGCAAAGTTTTCACTCCA
CCAGGACAAGGCAATGAACGCATCGAGGAGTCGGTGTGGCAGCTTGCCAA
AGCTTATGCTGCTGTAAACGATTCTGGCTATCATCAGCTTATCAGCCACT
GGTAAGATGCCTAACATACAAAGTGCTGTATTCGAGCAACAGGTAGCGGC
TTGGGTTCTAGTTTACACGCTTATAAATTTTATTTGCAGGTTAAACACAC
ATGCTGTGATAAAGCCATTTGTGATCACAACAAATAGACAGTTGAGTGTA
CTTCACCCGATACATAAGCTTTTGCATCCGCACTTCCGGGACACAATGAA
CATAAATGCCCTGGCCAGGCAAATCCTCATCAATGCCGGTGGGGTGCTTG
AGAAAACAGTCTTCCCAGGTCGATTCTCCATGGAAATGTCGGCTGTTATT
TATAAGAGCTGGGTATTTACCGAGCAGGCATTACCTGCTGACTTGCTCAA
GAGGTAASCCAGAAAGCCCAAATTGAAAATAATAATGTTTAAATTTCCAT
CAAACTGAATGTCATTTTGCTTCTGTTCGATTTCAGAGGAATGGCAGTTC
CAGATACGACTTGTCCTCATGGCCTGAGACTTCTGATTGAAGACTACCCG
TTTGCTGTTGATGGGCTAGAAATTTGGTCGGCGATTGAAACTTGGGTTAA
TGAATACTGCTCTTTGTACTACCAATCGGACGATGTGGTCSAAGGTGATT
CTGAACTCCAGAACTGGTGGACAGAGCTCCGCAATATAGGCCACGGTGAC
AAGAAGAATGAACCATGGTGGCCTAAGATGCAAACAAGAGCTGAACTTAT
CGAATCATGTACCATAATCATATGGGTGGCTTCTGCCCTCCATGCAGCAG
TCAATTTCGGGCAATACTCTTACGCTGGCTACCTCCCTAACCGCCCAACT
GTAAGCCGACGTTTCATGCCTGAGCCAGGCACTGCTGAATATTATGAGCT
TGTGTCCTCCCCTGACACAGCTTTCCTTAAAACAATTACAGCTCAGTTCC
AAACTCTCCTTGGTGTATCTCTGATAGAGATTTTATCACGACATTCGACT
GATGAGGTTTATCTAGGGCAAAACGATACTCCTGAGTGGACTTCAGATGC
TGAAGCACTAGCAGCATTTGCAAGATTCGGAGAGAAGCTAATGGACATCG
AAAAGAGAATCGATGCAAGGAACAAGGATAATAGATTGAAGAACAGAGTT
GGGCCTGTAGACGTGCCTTATACCTTGCTTCACCCTAACACATCTGACAA
GAGTAGAGAGGGTGGACTGACTGGAAAAGGAATTCCCAACAGTGTCTCAA
TCTGA

protein sequence of MDP0000257474

>MDP0000257474 ID=MDP0000257474; Name=MDP0000257474; organism=Malus x domestica; type=polypeptide; length=900bp
MEAXCLKDKEKDNDDEKPDYMVSGSNRIRGKVVLMKKNVLDFNDLKASFV
DRIHELLGKGVSMQLISATHPEAAANGLKPRGKLGKVAYLEKWATTITSL
SAGETSFTISLDWDESHGAPGALLIRNHHHSQFYLKTITLEDVPEHGQLH
FVCNSWVYPAHRYKYNRIFFPNKAYLPSQTPELLHPYREEELANLRGSGS
GELKEWDRVYDYAYYNDLGSPDKGPKYARPILGGSYEYPYPRRGRTGRKT
TKTEHERHEEFLRFYDQFSFMLRTDPNSESRLPLLSLDIYVPRDERFGHV
KFSDFLAYGLKSLVQILLPELKSLCDKTINEFDTFDDVVNLYEGGIKLPN
GPTLKKIRERIPWELLKELIRSDGERFLKFPMPDVIKKDRSAWRTDKEFG
REMLAGVNPVNITRLKEFPPVSKLDPKVYGNQNSSIREEXIKGNMNXLTV
EEATEKNRLFILDHHDALMLYLRQINSTDTKTYATRTLLLLQEDGTLKPL
AIELSLPHPQGDRHGAVSKVFTPPGQGNERIEESVWQLAKAYAAVNDSGY
HQLISHWLNTHAVIKPFVITTNRQLSVLHPIHKLLHPHFRDTMNINALAR
QILINAGGVLEKTVFPGRFSMEMSAVIYKSWVFTEQALPADLLKRGMAVP
DTTCPHGLRLLIEDYPFAVDGLEIWSAIETWVNEYCSLYYQSDDVVXGDS
ELQNWWTELRNIGHGDKKNEPWWPKMQTRAELIESCTIIIWVASALHAAV
NFGQYSYAGYLPNRPTVSRRFMPEPGTAEYYELVSSPDTAFLKTITAQFQ
TLLGVSLIEILSRHSTDEVYLGQNDTPEWTSDAEALAAFARFGEKLMDIE
KRIDARNKDNRLKNRVGPVDVPYTLLHPNTSDKSREGGLTGKGIPNSVSI

mRNA from alignment at chr13:18548459..18552713-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000257474 ID=MDP0000257474; Name=MDP0000257474; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:18548459..18552713- (Malus x domestica

mRNA from alignment at MDC004058.502:1799..6053-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000257474 ID=MDP0000257474; Name=MDP0000257474; organism=Malus x domestica; type=mRNA; length=4255bp; location=Sequence derived from: MDC004058.502:1799..6053- (Malus x domestica
ATGGAAGCATRTTGTTTGAAGGACAAGGAGAAGGACAATGACGACGAGAA
GCCAGATTACATGGTGAGTGGGAGCAACAGAATCAGAGGAAAAGTTGTGT
TGATGAAGAAGAATGTGTTGGACTTCAACGACCTCAAAGCTTCRTTCGTT
GATAGAATCCATGAGCTCTTGGGCAAAGGTGTTTCCATGCAGCTCATTAG
TGCCACTCATCCTGAAGCAGCAGGTCAGTCTCTCTTCCTTCAGTTGAATC
GAATTAACAATTCACTCACTAAAATGCTTTGAGTTTTTCACACGTAAGCT
CTAAATAAACTAACTTTACATTTGAGAAAAATATATCATATCAAATCTGA
TACTTTAGAAGAAAAAWWGTTCCACTTACTTGGTAATTGGGGAGGACAAC
ATAAGAATTTCACAACTGCGAATCATTTATTGCATGACAAGTAGATAAAT
TACGAATGAGAGGTTTTCCTCCCCAATTGATCTCTTCATGTGCTTTTGTA
TAAAACTTATAGTTGTGAAGGTGTTTTCTAGTTTACTAAAATTCTTTTGT
TCAAGTTTTGAACGCATGGTTTTACTTTTAATGGGAACCCGCATAACTGG
ATACAAAGTCAAAAGCTACATATGTTGAAGAAGATAATTACTATATTAAG
ATTTTAACAGAGCTGAAATTGACATAAATTCTTATTCATGTGCAGCAAAT
GGATTGAAACCGAGAGGGAAGCTTGGAAAGGTTGCTTACCTGGAGAAATG
GGCTACAACCATTACATCGTTGTCGGCCGGTGAAACTAGTTTTACCATTT
CCTTGGATTGGGATGAGTCCCATGGAGCTCCCGGCGCTTTGCTGATCAGA
AACCATCACCATAGCCAATTCTACCTCAAGACAATAACATTAGAAGATGT
TCCCGAGCACGGTCAACTCCATTTTGTCTGCAATTCCTGGGTATACCCAG
CACATCGTTACAAGTACAATCGGATATTTTTCCCCAACAAGGTATACATT
CAGTCTGGTTAATTAACATAATGTCAAAATATAACATGCAATAGGGAGAC
ACATTTTTCACTTGTATTTTTTCTATTTAAGAATCGAAGAAATCTGGATC
TTATCTTATCCGACCCTTGTGGTCAGATTTGTCATGATTGATCCTTTTAA
TCTCTATAGTATGAAGCTTTACTGACCAAAAGTGGAAATATCACAATCCG
CTACTTTTCCAGCTGGATTAGCACTTGCACATAAAAATACCATGTTTTAY
TAATTATAAAATTTCATATCTGRTTTCATTGAACAATTTTCAGAAGTTAC
AACAAATTGGTATTTTTTCTAAATTATTGAAAGATAAATGATTTTCGCAC
ACTTTTATTTAKTTTTACTTTCTACTCCTATGATCCACCAAATGTATAAG
AGTGMAAGAAAATAAAAGAGCCGTGCTGAATCACTTCCCTGCTTAAATCT
GTGACCAATGACACGCAGAAATGCAACTTAAAAGCTATAATTTTAGCTAA
GGTACTTATGAGATTGCACTGACTGAAAACTTCATGTTTTTGTTCAGGCC
TACCTGCCATCTCAAACACCTGAGCTACTACACCCTTACAGGGAAGAAGA
ACTCGCCAATCTCCGAGGGAGTGGATCAGGCGAGCTAAAGGAGTGGGACA
GGGTCTATGACTATGCTTACTACAATGATTTAGGGAGTCCWGACAAGGGT
CCAAAATATGCCCGCCCTATACTTGGTGGGTCGTACGAGTATCCATATCC
AAGAAGAGGAAGAACTGGTCGAAAAACAACTAAAACCGGTCAGYAACCTG
AATAGTTCATTTTGCTAATTAAGTCCTGACTAAGTTAAGATATGGCGTAG
AACACGAACGACATGAAGAATTCTTACGGTTCTATGACCAATTTTCTTTC
ATGCTTCGTACAGACCCCAATTCCGAGAGCAGACTGCCGCTTCTAAGTCT
AGACATTTATGTTCCAAGAGATGAGCGGTTTGGCCACGTGAAGTTTTCCG
ATTTTCTTGCTTATGGCCTGAAATCCCTAGTTCAAATATTGCTTCCAGAA
CTCAAGTCTTTGTGTGATAAAACTATCAATGAGTTTGACACCTTTGACGA
CGTAGTTAATCTCTACGAGGGAGGTATCAAGTTACCAAATGGGCCTACAC
TGAAGAAAATAAGGGAGCGCATCCCTTGGGAGCTGCTTAAGGAACTGATT
CGCTCAGATGGCGAGCGATTTCTCAAGTTTCCAATGCCTGATGTGATTAA
AAGTACATACGTCTTTCCCCAATGACTGGTATTAGATATGCTAAATTCCT
TGAATTTTGAACATACTATCATACTAAATTGCAACGATTTCTTGATATAA
TGCAGAAGATAGGTCTGCATGGAGGACAGATAAAGAATTTGGRCGAGAAA
TGCTAGCAGGAGTGAACCCTGTTAACATCACCCGCCTCAAAGTAAAATAC
AAGTTTCCCTGATTCATTTGACTATTATAGYGATAAGGATACGTTCCAAG
TTTGTTCAAATAACCATCGAAATTCTAACTACAGGAGTTTCCCCCAGTCA
GTAAGCTAGACCCTAAAGTATATGGGAATCAGAACAGTTCGATACGAGAA
GAGYACATAAAAGGCAACATGAATGRCCTCACTGTTGAAGAGGTACTGCT
GATGCTTCATTTGTCTCCAATATATTAATCCAATGTTTTTTTTAAATGTA
TCTACTGAAATTATCATTTTTGTCCCTTTTTGCACAGGCAACTGAAAAGA
ACAGGCTATTCATATTAGATCATCATGATGCATTAATGTTATACCTGAGG
CAAATAAACTCAACGGACACAAAGACGTATGCCACAAGAACTCTCCTCTT
GCTGCAAGAAGACGGGACGTTGAAGCCTTTGGCAATTGAGCTAAGCTTAC
CACATCCACAAGGGGACCGTCATGGGGCTGTCAGCAAAGTTTTCACTCCA
CCAGGACAAGGCAATGAACGCATCGAGGAGTCGGTGTGGCAGCTTGCCAA
AGCTTATGCTGCTGTAAACGATTCTGGCTATCATCAGCTTATCAGCCACT
GGTAAGATGCCTAACATACAAAGTGCTGTATTCGAGCAACAGGTAGCGGC
TTGGGTTCTAGTTTACACGCTTATAAATTTTATTTGCAGGTTAAACACAC
ATGCTGTGATAAAGCCATTTGTGATCACAACAAATAGACAGTTGAGTGTA
CTTCACCCGATACATAAGCTTTTGCATCCGCACTTCCGGGACACAATGAA
CATAAATGCCCTGGCCAGGCAAATCCTCATCAATGCCGGTGGGGTGCTTG
AGAAAACAGTCTTCCCAGGTCGATTCTCCATGGAAATGTCGGCTGTTATT
TATAAGAGCTGGGTATTTACCGAGCAGGCATTACCTGCTGACTTGCTCAA
GAGGTAASCCAGAAAGCCCAAATTGAAAATAATAATGTTTAAATTTCCAT
CAAACTGAATGTCATTTTGCTTCTGTTCGATTTCAGAGGAATGGCAGTTC
CAGATACGACTTGTCCTCATGGCCTGAGACTTCTGATTGAAGACTACCCG
TTTGCTGTTGATGGGCTAGAAATTTGGTCGGCGATTGAAACTTGGGTTAA
TGAATACTGCTCTTTGTACTACCAATCGGACGATGTGGTCSAAGGTGATT
CTGAACTCCAGAACTGGTGGACAGAGCTCCGCAATATAGGCCACGGTGAC
AAGAAGAATGAACCATGGTGGCCTAAGATGCAAACAAGAGCTGAACTTAT
CGAATCATGTACCATAATCATATGGGTGGCTTCTGCCCTCCATGCAGCAG
TCAATTTCGGGCAATACTCTTACGCTGGCTACCTCCCTAACCGCCCAACT
GTAAGCCGACGTTTCATGCCTGAGCCAGGCACTGCTGAATATTATGAGCT
TGTGTCCTCCCCTGACACAGCTTTCCTTAAAACAATTACAGCTCAGTTCC
AAACTCTCCTTGGTGTATCTCTGATAGAGATTTTATCACGACATTCGACT
GATGAGGTTTATCTAGGGCAAAACGATACTCCTGAGTGGACTTCAGATGC
TGAAGCACTAGCAGCATTTGCAAGATTCGGAGAGAAGCTAATGGACATCG
AAAAGAGAATCGATGCAAGGAACAAGGATAATAGATTGAAGAACAGAGTT
GGGCCTGTAGACGTGCCTTATACCTTGCTTCACCCTAACACATCTGACAA
GAGTAGAGAGGGTGGACTGACTGGAAAAGGAATTCCCAACAGTGTCTCAA
TCTGA

Coding sequence (CDS) from alignment at MDC004058.502:1799..6053-

>MDP0000257474 ID=MDP0000257474; Name=MDP0000257474; organism=Malus x domestica; type=CDS; length=2703bp; location=Sequence derived from: MDC004058.502:1799..6053- (Malus x domestica
ATGGAAGCATRTTGTTTGAAGGACAAGGAGAAGGACAATGACGACGAGAA
GCCAGATTACATGGTGAGTGGGAGCAACAGAATCAGAGGAAAAGTTGTGT
TGATGAAGAAGAATGTGTTGGACTTCAACGACCTCAAAGCTTCRTTCGTT
GATAGAATCCATGAGCTCTTGGGCAAAGGTGTTTCCATGCAGCTCATTAG
TGCCACTCATCCTGAAGCAGCAGCAAATGGATTGAAACCGAGAGGGAAGC
TTGGAAAGGTTGCTTACCTGGAGAAATGGGCTACAACCATTACATCGTTG
TCGGCCGGTGAAACTAGTTTTACCATTTCCTTGGATTGGGATGAGTCCCA
TGGAGCTCCCGGCGCTTTGCTGATCAGAAACCATCACCATAGCCAATTCT
ACCTCAAGACAATAACATTAGAAGATGTTCCCGAGCACGGTCAACTCCAT
TTTGTCTGCAATTCCTGGGTATACCCAGCACATCGTTACAAGTACAATCG
GATATTTTTCCCCAACAAGGCCTACCTGCCATCTCAAACACCTGAGCTAC
TACACCCTTACAGGGAAGAAGAACTCGCCAATCTCCGAGGGAGTGGATCA
GGCGAGCTAAAGGAGTGGGACAGGGTCTATGACTATGCTTACTACAATGA
TTTAGGGAGTCCWGACAAGGGTCCAAAATATGCCCGCCCTATACTTGGTG
GGTCGTACGAGTATCCATATCCAAGAAGAGGAAGAACTGGTCGAAAAACA
ACTAAAACCGAACACGAACGACATGAAGAATTCTTACGGTTCTATGACCA
ATTTTCTTTCATGCTTCGTACAGACCCCAATTCCGAGAGCAGACTGCCGC
TTCTAAGTCTAGACATTTATGTTCCAAGAGATGAGCGGTTTGGCCACGTG
AAGTTTTCCGATTTTCTTGCTTATGGCCTGAAATCCCTAGTTCAAATATT
GCTTCCAGAACTCAAGTCTTTGTGTGATAAAACTATCAATGAGTTTGACA
CCTTTGACGACGTAGTTAATCTCTACGAGGGAGGTATCAAGTTACCAAAT
GGGCCTACACTGAAGAAAATAAGGGAGCGCATCCCTTGGGAGCTGCTTAA
GGAACTGATTCGCTCAGATGGCGAGCGATTTCTCAAGTTTCCAATGCCTG
ATGTGATTAAAAAAGATAGGTCTGCATGGAGGACAGATAAAGAATTTGGR
CGAGAAATGCTAGCAGGAGTGAACCCTGTTAACATCACCCGCCTCAAAGA
GTTTCCCCCAGTCAGTAAGCTAGACCCTAAAGTATATGGGAATCAGAACA
GTTCGATACGAGAAGAGYACATAAAAGGCAACATGAATGRCCTCACTGTT
GAAGAGGCAACTGAAAAGAACAGGCTATTCATATTAGATCATCATGATGC
ATTAATGTTATACCTGAGGCAAATAAACTCAACGGACACAAAGACGTATG
CCACAAGAACTCTCCTCTTGCTGCAAGAAGACGGGACGTTGAAGCCTTTG
GCAATTGAGCTAAGCTTACCACATCCACAAGGGGACCGTCATGGGGCTGT
CAGCAAAGTTTTCACTCCACCAGGACAAGGCAATGAACGCATCGAGGAGT
CGGTGTGGCAGCTTGCCAAAGCTTATGCTGCTGTAAACGATTCTGGCTAT
CATCAGCTTATCAGCCACTGGTTAAACACACATGCTGTGATAAAGCCATT
TGTGATCACAACAAATAGACAGTTGAGTGTACTTCACCCGATACATAAGC
TTTTGCATCCGCACTTCCGGGACACAATGAACATAAATGCCCTGGCCAGG
CAAATCCTCATCAATGCCGGTGGGGTGCTTGAGAAAACAGTCTTCCCAGG
TCGATTCTCCATGGAAATGTCGGCTGTTATTTATAAGAGCTGGGTATTTA
CCGAGCAGGCATTACCTGCTGACTTGCTCAAGAGAGGAATGGCAGTTCCA
GATACGACTTGTCCTCATGGCCTGAGACTTCTGATTGAAGACTACCCGTT
TGCTGTTGATGGGCTAGAAATTTGGTCGGCGATTGAAACTTGGGTTAATG
AATACTGCTCTTTGTACTACCAATCGGACGATGTGGTCSAAGGTGATTCT
GAACTCCAGAACTGGTGGACAGAGCTCCGCAATATAGGCCACGGTGACAA
GAAGAATGAACCATGGTGGCCTAAGATGCAAACAAGAGCTGAACTTATCG
AATCATGTACCATAATCATATGGGTGGCTTCTGCCCTCCATGCAGCAGTC
AATTTCGGGCAATACTCTTACGCTGGCTACCTCCCTAACCGCCCAACTGT
AAGCCGACGTTTCATGCCTGAGCCAGGCACTGCTGAATATTATGAGCTTG
TGTCCTCCCCTGACACAGCTTTCCTTAAAACAATTACAGCTCAGTTCCAA
ACTCTCCTTGGTGTATCTCTGATAGAGATTTTATCACGACATTCGACTGA
TGAGGTTTATCTAGGGCAAAACGATACTCCTGAGTGGACTTCAGATGCTG
AAGCACTAGCAGCATTTGCAAGATTCGGAGAGAAGCTAATGGACATCGAA
AAGAGAATCGATGCAAGGAACAAGGATAATAGATTGAAGAACAGAGTTGG
GCCTGTAGACGTGCCTTATACCTTGCTTCACCCTAACACATCTGACAAGA
GTAGAGAGGGTGGACTGACTGGAAAAGGAATTCCCAACAGTGTCTCAATC
TGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000907	LipOase
IPR001024	PLAT/LH2_dom
IPR001246	LipOase_plant
IPR008976	Lipase/lipooxygenase, PLAT/LH2
IPR013819	LipOase_C
IPR020834	LipOase_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0005515	protein binding
GO:0005506	iron ion binding
GO:0016165	linoleate 13S-lipoxygenase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	obsolete oxidation-reduction process