MDP0000258531, MDP0000258531 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000258531
Unique Name	MDP0000258531
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	3395

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr9	chromosome	chr9:19552529..19555923 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC008069.235	contig	MDC008069.235:2679..6073 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000258531_exon_1	MDP0000258531_exon_1	Malus x domestica	CDS
MDP0000258531_exon_2	MDP0000258531_exon_2	Malus x domestica	CDS
MDP0000258531_exon_3	MDP0000258531_exon_3	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000258531	MDP0000258531	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001202	WW/Rsp5/WWP	GENE3D	2.20.70.10	no description	coord: 15..47 score: 0.0
IPR001202	WW/Rsp5/WWP	PROFILE	PS50020	WW_DOMAIN_2	coord: 17..51 score: 8
IPR001202	WW/Rsp5/WWP	SUPERFAMILY	51045	WW domain	coord: 13..56 score: 5.2
None	No IPR available	SEG	seg	seg	coord: 2..9 score
None	No IPR available	SEG	seg	seg	coord: 23..46 score: NAcoord: 77..83 score
None	No IPR available	SEG	seg	seg	coord: 39..50 score
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 24..44 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr9:19552529..19555923+
mRNA from alignment at MDC008069.235:2679..6073+
coding sequence from alignment at MDC008069.235:2679..6073+

mRNA sequence

>MDP0000258531 ID=MDP0000258531; Name=MDP0000258531; organism=Malus x domestica; type=mRNA; length=3395bp
ATGGCTGCCACTGCAACTACCGCTRGTCCTCGATATACTCCAGAGGACCC
AACTCTTCCCAAACCATGGAGAAGACTCGTTGATGGTAAAATGGGGTATC
TTTACTTCTGGAACCCYGAGACTAATGTCACCCAATATGATARGTTGACT
AGCTCAGTTGCTCCATCAAAGCCTTTTTCAGCACAGTCTATAAGCTCTTC
AGTTCACGTTTACCAATCTTCACAAGGATAACRTCGTCCTGATGAGGGAG
ATGATGGGTATGGCAGAGGCAGCAATGGTGGGTCCAAGTTTGACACAKGA
TCAAAAAATCAGCAGACTGCAAGAAGTGCAACAGTGTCTTCTCATAATAC
CCCGAGTGGGACACTAAGTGCACATGGAGGATCTTCTGTGAAAGGAAATG
GATCAAACATTGGAAGCAGTTTGTCTGCTGAGGCTTATAATCGCCGACAT
GAAATATYTGTTGTTGGTGATAATATGCCTCCACCGTTTACTTCATTTAA
ATCTACTGGCTTCCCATCTGAGATTCTTAGAGATGTGCAACATTTGCTCC
TGGGAGGAGCTAATGTCGTCAMGGCAAAAGCAGTGTTTGCAGAGCTTTGG
TCAAGCAAAGAACGTGATCAGCTCATCCCTTTCCAGCAGTGCCAACACAA
CATCACCACATGGCCAACCTGCAGATTCAAAGGTGCACATGCATGATAGC
TCAGGGACAGAAAGAGAGGAAAGTGAAAAGAAAAAAGAAAAAGCTTTTGC
AAAAGCAAAAGAGAAGATAAGAGTATTATCTTATTATCAAATCTATTATC
ATTCCTTGTCTACCATATTCATCAGGGTCAAGAAACAGAAACAAAAGCAA
AAGGAAAAGCAGAAAAGGAAAAGAGAAAAGCAAAAGATCTTCCTATTATT
ATGACTCCTTATGTCTGCCAGATGAAGAGACAGAGAGAATGCAGCAGAAA
AACACTGCAAAAGCAAGGAATAAACACCCTACCAGAATGATGTAAATTAT
TTTTCTTATCTTTCAGATATATCTGTATAAAGCCCATCAGAGGATAATAT
ATATAAAAACAAAAAAAAACGGCAAAGCCCAAAACAAATGGGCTGGCATG
TTGTGGAGGGCGAAGGCCCATAAGCCCGAAATAGCACCAACCAGGTCATC
AAAAGTACGCCTAGTACTCCAAAAATTATTCGGCAACCCGCCGCTATTAC
CACCAACCAGGTGATGAAATGTACAACCCGTACTCTCCTTCATGCCACCA
ACCAGGTGATGAAAAGTAGCCCAGTACTCCAAATTATACATAAGCACTAC
TCATGTCATTCATACATAAACATTCATGAGCATCACTCATAACAATCATA
CATAAACATTCATGACCATCATTCATGTCAACATTCATGAGCATCACTCA
TGTCAACATTCATGAGCATCACTCATGTTAACATTCATGAGCATCACTCA
TGACAACATCCATGAGCATCACTCATGTCAATCAACATAAACATTCATGA
GCATCACTCATGTCAATCAGCTTCAAAAGCTTCATTTACAGAGCTCTAGC
TTCAAAGCTTCACTTGCAAAGCTTCACCTACAAAGCTTCAGTGCATGGTA
TACAAATACTGCATCTGAACAACCGCCACTTCGACCCATACATGGATTCA
ATTTGAAGTCTCTAGCCAACAGAATCTATTGACCAAAGACTTGGGGGACT
ACATTATGTACCACATATTGGGCCTCAACTGGGCCTCATGAAAAATACTT
GGGGGACTTAGCCCATTACTTATGTATTGAGGAGCGAGCCCTTATTCTAT
AAAATGGACTCCCTCACTTTCACTAGAGAGCACCCATTGTTCATGTACTG
AGGAGCGAGCCCTTATTTTATAAAAGGGACTCCTTCACCACCACTAGAAA
GCATCGCCGCCTACTAAGCAACCGCCTCGCCGCGAGCATCAACTCTAGCC
CATCATTTATGTAGTGATGAACGAGCCCTTATCTATAAAAATGACTCCCT
CACCATCATTAAAGAGCATCAACTCTAGCCCATCATTCATGTATTGAGGA
ACGAGCCCTTATTCTATAAAAGGGACTCCCTCACGTTCAAACGCCGCAAG
CCGAGCCAACCAAGACAACATAAGCCACAAGCCGAGTAGCCTCGTAGCGT
GTGCTACTTCTAGTTGAGCGTCATTTTAGATTGAGCACTGCCTCATATCG
AGCATCAATTCTAGACAGCATCTAGTTACTTCGGCCCACACATGGACTAA
ATTTCAAATCTCCAACCAAAAGACTCTCTTGACTGAAGACTTGGGGGACT
ACTGTTTATACCATATTTAGGGCCTCGTATTTAGACCTCGTATGAATACT
CGGGGGACTTAAATGTAATTATGTAATAAAGGAAAGGGCAAATATGTAAT
TAGGGGAGGAGCCTCTATTCTATAAAAGGGTCTCCTCACCCTCACAAACC
CTAAGTCTCTCCTATCTAGAGCAAAGCTCTCACACTCTTTCCTTTACTTC
TCAGAGAAATACAATACAATCAGTGTGGACGTAGCCCAAACCTTGGGGTG
AACCACGATACATCTTGTGTTATTTACATTACTTGCAGATTCACGGTCGA
ATTTACGTTGTTCCAAGACCTCCGGTTTTGTGCATCAACAACCTGTATGT
TCAAAATGTACCTTAGTTTCAGCAATCAATACACGTGACTTATTACACCG
GGGATCACAAGTCTAGTCCCAATTAACAGGATAGCCAATAAGTTCGAAAC
AATGATCTTTTGAATGCCCTTTCGAACTACAGTGAGAGCACTTGTTGGGT
GGACGGTAAAACGAACCAAGAGTCGGAATATCTTCCTTTGGTTGGATCTC
ATCGCAAGCCATTAAATTGTAGAGTGAAGAAAAGTGAATGGTGTGGCTTC
AAGTGAAAAGTGGGACAACCTTCCATGCTGCAAAAGAAAAAAAACTGCAA
GAAACTTGGAAAAGTCTCGAATGCAAAACCGTGGGCCAAAAACTTAAAGC
TCAAAGAAACTCGTTTTGTTTCATATCTTTTTYTWTTTTTTYTTTYTTTT
TTTTTTTTYTTTTTTTYTTTTTTTTTCCTTTTCCTTTTCCTTTTATTTTC
CTTTCTTTCTCTTTGGGGCTTTCGAAACAAGCGCAGGTGCAGATAGGATG
GGATGCAACAACGGGTTCAACTTCAATTGTAAAATGCAATGGCAGGTGCG
AATTTAGATCAAGATGATGACGTGGTTCGAATTGATTTCAGTCAGATTGG
TTTGTGCAACAATGATTTCAGGCGAGGTGCTCCCGTCGATTTAGCAGTAG
AAGCAGTGGATCAACAACTGGGTTGGTGTCGGTATTGCAGCAGCAGTGAT
TCGATGTTGGTTCGTGAGCTATGGGGCAMGCAAGCTTCGATCTAG

protein sequence of MDP0000258531

>MDP0000258531 ID=MDP0000258531; Name=MDP0000258531; organism=Malus x domestica; type=polypeptide; length=266bp
MAATATTAXPRYTPEDPTLPKPWRRLVDGKMGYLYFWNPETNVTQYDXLT
SSVAPSKPFSAQGSNGGSKFDTXSKNQQTARSATVSSHNTPSGTLSAHGG
SSVKGNGSNIGSSLSAEAYNRRHEIXVVGDNMPPPFTSFKSTGFPSEILR
DVQHLLLGGANVVXAKAVFAELWSSKERDQLIPFQQCQHNITTWPTCRFK
GANLDQDDDVVRIDFSQIGLCNNDFRRGAPVDLAVEAVDQQLGWCRYCSS
SDSMLVRELWGXQASI

mRNA from alignment at chr9:19552529..19555923+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000258531 ID=MDP0000258531; Name=MDP0000258531; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr9:19552529..19555923+ (Malus x domestica

mRNA from alignment at MDC008069.235:2679..6073+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000258531 ID=MDP0000258531; Name=MDP0000258531; organism=Malus x domestica; type=mRNA; length=3395bp; location=Sequence derived from: MDC008069.235:2679..6073+ (Malus x domestica
ATGGCTGCCACTGCAACTACCGCTRGTCCTCGATATACTCCAGAGGACCC
AACTCTTCCCAAACCATGGAGAAGACTCGTTGATGGTAAAATGGGGTATC
TTTACTTCTGGAACCCYGAGACTAATGTCACCCAATATGATARGTTGACT
AGCTCAGTTGCTCCATCAAAGCCTTTTTCAGCACAGTCTATAAGCTCTTC
AGTTCACGTTTACCAATCTTCACAAGGATAACRTCGTCCTGATGAGGGAG
ATGATGGGTATGGCAGAGGCAGCAATGGTGGGTCCAAGTTTGACACAKGA
TCAAAAAATCAGCAGACTGCAAGAAGTGCAACAGTGTCTTCTCATAATAC
CCCGAGTGGGACACTAAGTGCACATGGAGGATCTTCTGTGAAAGGAAATG
GATCAAACATTGGAAGCAGTTTGTCTGCTGAGGCTTATAATCGCCGACAT
GAAATATYTGTTGTTGGTGATAATATGCCTCCACCGTTTACTTCATTTAA
ATCTACTGGCTTCCCATCTGAGATTCTTAGAGATGTGCAACATTTGCTCC
TGGGAGGAGCTAATGTCGTCAMGGCAAAAGCAGTGTTTGCAGAGCTTTGG
TCAAGCAAAGAACGTGATCAGCTCATCCCTTTCCAGCAGTGCCAACACAA
CATCACCACATGGCCAACCTGCAGATTCAAAGGTGCACATGCATGATAGC
TCAGGGACAGAAAGAGAGGAAAGTGAAAAGAAAAAAGAAAAAGCTTTTGC
AAAAGCAAAAGAGAAGATAAGAGTATTATCTTATTATCAAATCTATTATC
ATTCCTTGTCTACCATATTCATCAGGGTCAAGAAACAGAAACAAAAGCAA
AAGGAAAAGCAGAAAAGGAAAAGAGAAAAGCAAAAGATCTTCCTATTATT
ATGACTCCTTATGTCTGCCAGATGAAGAGACAGAGAGAATGCAGCAGAAA
AACACTGCAAAAGCAAGGAATAAACACCCTACCAGAATGATGTAAATTAT
TTTTCTTATCTTTCAGATATATCTGTATAAAGCCCATCAGAGGATAATAT
ATATAAAAACAAAAAAAAACGGCAAAGCCCAAAACAAATGGGCTGGCATG
TTGTGGAGGGCGAAGGCCCATAAGCCCGAAATAGCACCAACCAGGTCATC
AAAAGTACGCCTAGTACTCCAAAAATTATTCGGCAACCCGCCGCTATTAC
CACCAACCAGGTGATGAAATGTACAACCCGTACTCTCCTTCATGCCACCA
ACCAGGTGATGAAAAGTAGCCCAGTACTCCAAATTATACATAAGCACTAC
TCATGTCATTCATACATAAACATTCATGAGCATCACTCATAACAATCATA
CATAAACATTCATGACCATCATTCATGTCAACATTCATGAGCATCACTCA
TGTCAACATTCATGAGCATCACTCATGTTAACATTCATGAGCATCACTCA
TGACAACATCCATGAGCATCACTCATGTCAATCAACATAAACATTCATGA
GCATCACTCATGTCAATCAGCTTCAAAAGCTTCATTTACAGAGCTCTAGC
TTCAAAGCTTCACTTGCAAAGCTTCACCTACAAAGCTTCAGTGCATGGTA
TACAAATACTGCATCTGAACAACCGCCACTTCGACCCATACATGGATTCA
ATTTGAAGTCTCTAGCCAACAGAATCTATTGACCAAAGACTTGGGGGACT
ACATTATGTACCACATATTGGGCCTCAACTGGGCCTCATGAAAAATACTT
GGGGGACTTAGCCCATTACTTATGTATTGAGGAGCGAGCCCTTATTCTAT
AAAATGGACTCCCTCACTTTCACTAGAGAGCACCCATTGTTCATGTACTG
AGGAGCGAGCCCTTATTTTATAAAAGGGACTCCTTCACCACCACTAGAAA
GCATCGCCGCCTACTAAGCAACCGCCTCGCCGCGAGCATCAACTCTAGCC
CATCATTTATGTAGTGATGAACGAGCCCTTATCTATAAAAATGACTCCCT
CACCATCATTAAAGAGCATCAACTCTAGCCCATCATTCATGTATTGAGGA
ACGAGCCCTTATTCTATAAAAGGGACTCCCTCACGTTCAAACGCCGCAAG
CCGAGCCAACCAAGACAACATAAGCCACAAGCCGAGTAGCCTCGTAGCGT
GTGCTACTTCTAGTTGAGCGTCATTTTAGATTGAGCACTGCCTCATATCG
AGCATCAATTCTAGACAGCATCTAGTTACTTCGGCCCACACATGGACTAA
ATTTCAAATCTCCAACCAAAAGACTCTCTTGACTGAAGACTTGGGGGACT
ACTGTTTATACCATATTTAGGGCCTCGTATTTAGACCTCGTATGAATACT
CGGGGGACTTAAATGTAATTATGTAATAAAGGAAAGGGCAAATATGTAAT
TAGGGGAGGAGCCTCTATTCTATAAAAGGGTCTCCTCACCCTCACAAACC
CTAAGTCTCTCCTATCTAGAGCAAAGCTCTCACACTCTTTCCTTTACTTC
TCAGAGAAATACAATACAATCAGTGTGGACGTAGCCCAAACCTTGGGGTG
AACCACGATACATCTTGTGTTATTTACATTACTTGCAGATTCACGGTCGA
ATTTACGTTGTTCCAAGACCTCCGGTTTTGTGCATCAACAACCTGTATGT
TCAAAATGTACCTTAGTTTCAGCAATCAATACACGTGACTTATTACACCG
GGGATCACAAGTCTAGTCCCAATTAACAGGATAGCCAATAAGTTCGAAAC
AATGATCTTTTGAATGCCCTTTCGAACTACAGTGAGAGCACTTGTTGGGT
GGACGGTAAAACGAACCAAGAGTCGGAATATCTTCCTTTGGTTGGATCTC
ATCGCAAGCCATTAAATTGTAGAGTGAAGAAAAGTGAATGGTGTGGCTTC
AAGTGAAAAGTGGGACAACCTTCCATGCTGCAAAAGAAAAAAAACTGCAA
GAAACTTGGAAAAGTCTCGAATGCAAAACCGTGGGCCAAAAACTTAAAGC
TCAAAGAAACTCGTTTTGTTTCATATCTTTTTYTWTTTTTTYTTTYTTTT
TTTTTTTTYTTTTTTTYTTTTTTTTTCCTTTTCCTTTTCCTTTTATTTTC
CTTTCTTTCTCTTTGGGGCTTTCGAAACAAGCGCAGGTGCAGATAGGATG
GGATGCAACAACGGGTTCAACTTCAATTGTAAAATGCAATGGCAGGTGCG
AATTTAGATCAAGATGATGACGTGGTTCGAATTGATTTCAGTCAGATTGG
TTTGTGCAACAATGATTTCAGGCGAGGTGCTCCCGTCGATTTAGCAGTAG
AAGCAGTGGATCAACAACTGGGTTGGTGTCGGTATTGCAGCAGCAGTGAT
TCGATGTTGGTTCGTGAGCTATGGGGCAMGCAAGCTTCGATCTAG

Coding sequence (CDS) from alignment at MDC008069.235:2679..6073+

>MDP0000258531 ID=MDP0000258531; Name=MDP0000258531; organism=Malus x domestica; type=CDS; length=801bp; location=Sequence derived from: MDC008069.235:2679..6073+ (Malus x domestica
ATGGCTGCCACTGCAACTACCGCTRGTCCTCGATATACTCCAGAGGACCC
AACTCTTCCCAAACCATGGAGAAGACTCGTTGATGGTAAAATGGGGTATC
TTTACTTCTGGAACCCYGAGACTAATGTCACCCAATATGATARGTTGACT
AGCTCAGTTGCTCCATCAAAGCCTTTTTCAGCACAAGGCAGCAATGGTGG
GTCCAAGTTTGACACAKGATCAAAAAATCAGCAGACTGCAAGAAGTGCAA
CAGTGTCTTCTCATAATACCCCGAGTGGGACACTAAGTGCACATGGAGGA
TCTTCTGTGAAAGGAAATGGATCAAACATTGGAAGCAGTTTGTCTGCTGA
GGCTTATAATCGCCGACATGAAATATYTGTTGTTGGTGATAATATGCCTC
CACCGTTTACTTCATTTAAATCTACTGGCTTCCCATCTGAGATTCTTAGA
GATGTGCAACATTTGCTCCTGGGAGGAGCTAATGTCGTCAMGGCAAAAGC
AGTGTTTGCAGAGCTTTGGTCAAGCAAAGAACGTGATCAGCTCATCCCTT
TCCAGCAGTGCCAACACAACATCACCACATGGCCAACCTGCAGATTCAAA
GGTGCGAATTTAGATCAAGATGATGACGTGGTTCGAATTGATTTCAGTCA
GATTGGTTTGTGCAACAATGATTTCAGGCGAGGTGCTCCCGTCGATTTAG
CAGTAGAAGCAGTGGATCAACAACTGGGTTGGTGTCGGTATTGCAGCAGC
AGTGATTCGATGTTGGTTCGTGAGCTATGGGGCAMGCAAGCTTCGATCTA
G

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001202	WW_dom
IPR007087	Znf_C2H2

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure