MDP0000267022, MDP0000267022 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000267022
Unique NameMDP0000267022
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length2580
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000267022_exon_1MDP0000267022_exon_1Malus x domesticaCDS
MDP0000267022_exon_2MDP0000267022_exon_2Malus x domesticaCDS
MDP0000267022_exon_3MDP0000267022_exon_3Malus x domesticaCDS
MDP0000267022_exon_4MDP0000267022_exon_4Malus x domesticaCDS
MDP0000267022_exon_5MDP0000267022_exon_5Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000267022MDP0000267022Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000109Oligopeptide transporterPFAMPF00854PTR2coord: 175..572
score: 8.8
IPR016196Major facilitator superfamily domain, general substrate transporterSUPERFAMILY103473MFS general substrate transportercoord: 69..647
score: 2.3
NoneNo IPR availablePANTHERPTHR11654FAMILY NOT NAMEDcoord: 67..670
score: 1.3e
NoneNo IPR availablePANTHERPTHR11654:SF37OLIGOPEPTIDE TRANSPORTER-RELATEDcoord: 67..670
score: 1.3e
NoneNo IPR availableSEGsegsegcoord: 31..42
score: NAcoord: 182..200
score: NAcoord: 261..270
score
NoneNo IPR availableSEGsegsegcoord: 33..44
score
NoneNo IPR availableSEGsegsegcoord: 38..50
score
NoneNo IPR availableSEGsegsegcoord: 1..14
score
NoneNo IPR availableSEGsegsegcoord: 2..13
score
NoneNo IPR availableSEGsegsegcoord: 70..81
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000267022 ID=MDP0000267022; Name=MDP0000267022; organism=Malus x domestica; type=mRNA; length=2580bp
ATGACAAAAGGGTTTTCCGTGTTTTCTAGTTTTCCGGCAACTTTTGTGAA
TTGGCCTACTACATTGCTGTTTGTGATTACCGATCCACGCTCTTCCTCAT
CACCGGAGTCCGGCTCAACAATTTCAAGAGCAGTGATCAAGTTTCGTAAA
AGGTTGGAATATCCAACATATTTCAGCTATCTTCATCATATATTRTGTAA
TAATGTAGCTTTACAGTTAATTTGTTATCAGTAGCACATAATTAACTTAG
TGTCCCCTACAAAATTGGCAGATGATAAGCGAAGCCCCTAACCGAGACAT
TGAAGGAGCAGAAGTTGTGGATACAAACATCCATGAGATAACTCAGGAGT
CCAAACCCACTGTCAAAAAGAGAGTAGGAGGATGGAAACTTGCACTTATC
TTGCTAGGTACTCATCATCGATGATATTCACTTTTCCTAGCATATATAGA
TTTTGCAATTCAAGATTATTTTCCATATCTCTCCAAATAGTATTAGGGAG
AACGATACACATTTTTCTTCGGTTATATTCATGTTATGTCTTATTCGGTG
CAGCGAACCAAGGCCTAGCAACACTAGCTTTCTTTGGTGTAGGAGTGAAC
TTGGTTTTGTTTCTGATCAGAGTTCTTGATCAAGAAAGTGCCACTGCGGC
AAACAATGTCAGCATATGGACTGGAACTGTTTATTTGTTCTCTCTAGTTG
GAGCATTCCTCAGTGACTCCTATTGGGGTCGTTACTTAACCTGCGCCATC
TTTCAAGTCATCCTTGTTCTGGTATAATATATACTTTTCTTTTTGAGATG
TCCCAAGTGAAKTTTTTGAATTGTTCTTCAAACATACATGTATAACAAAA
CTTAATGTTCGTTAATCAGGGCTTGGGGCTATTGTCCTTGACGTCTTGGC
TCTGGCTGATCCATCCGCACGGTTGCGGTGGTGTAGGAAATTACTGCCAG
CCAACATCCAAAGTTGGTGTGGCTTTCTTTTACCTATCAATATATCTAAT
CGCACTTGGATACGGTGGCCACCAACCAACTATTGCAACATTTGGAGCAG
ACCAATTCGACGAGAGTGATCCCAAACAACAATTTTCGAAAGCAGCTTTC
TTTGCTTACTTCTACTTTGCACTCAACGTTGGGTGTCTTTTCTCAAACAC
CATATTGGTTTWCTATGAGGATAAAGGTTTATGGACTCTGGGGTTTCTGG
TGTCATTAGGATCTGCTATCTTAGCCCTAGTGTCATATTTGGCAGCATCA
CCTGGGTACCGGTACCTAAAACCATGTGGCAACCCATTGCCACGCGTGGC
TCAGGTATTCGTGGCTGCCTTTAGAAAATTGAGTGTTGCTCCAACCAGCC
CGGAYAATCTTTATGAGCTGGAAGGAACAAAATCTGCAATCAAAGGGAGT
AGAAAGATTCTACACAGTAATGAGATTTTGTAAGTAATATTGCACTTTAA
CTGTATGTAAGTTAATTAAGTTAACTGTGGTTAGCTGAGCTCTAAAATAA
TGTCATCTGCACTTTTATCCTTTTTATTTTATCATGCCAGGAGTGCAAGA
TGGCATTTTAAGAGTAATAGAAGCTCTCTGATTTAATAGTTTTATTAGTT
TCCTAATATTTCAAGTTCTTTTTGTTAGGTTTTTGGACAAGGCAGCGACA
ATAACCGAGAAGGATCAAACTGCAGACGAAACAAATCCATGGAGGCTTTG
TACTGTAACTCAAGTTGAGGAAGCGAAATGCGTACTAAAAATGCTACCCG
TTTGGCTTTGCACCATAATTTACTCAGTGGTGTTTACACAGATGGCTTCA
CTTTTTGTGGAGCAAGGTGATGTGATGGAATCCCACATCGGAAAGTTTCA
CCTTCCGGCCGCCAGCATGTCTGTATTTGACATATGCAGTGTCTTTATCT
GCACAGGACTTTATCGCAATTTCCTTGTGCCTTTAGCCGGAAGGTTAAGT
GGGAACCCAAAAGGCCTATCCGAGCTTCAAAGAATGGGTGTAGGGCTTAT
TATTGGATTGTTGGCAATGGTTGCGGCCGGTGCCACGGAAATTGCTAGGC
TCAGAGGTGTTACACCAGGTGAGAAGGTAAGCTCACTAAGCATATTTTGG
CAAATCCCACAATATGTTCTTGTTGGTACTTCAGAAGTTTTTATGTATGT
GGGACAACTTGAGTTCTTCAATGGACAAGCCCCGGATGGGATTAAAAGCT
TTGGAAGTTCATTGTGCATGGCGTCGATATCTCTCGGAAACTATGTGAGC
AGCTTACTAGTTAACATAGTAACGCATATTACAGCTAGAGGTGGAGACCC
TGGTTGGATCCCAAATAATCTGAATGAAGGTCACTTGGATAGATTCTACT
TCCTCATTGCAATTCTAACAGCTTTGGATTTTGTGGTTTATTTGTTTTGT
GCTAAGTGGTACAAGGGAATCAACCTCCAAAGCTCTGAGCAGGAAATTGA
GATCATGGAAAATCAGAAGGGCAATGATCTCCAAGGTTCTGRGCAGGAAA
CTCAGATCACRGAAACTCAACCCGGAAGTTCATCAAATCAGGGAAAAGCA
CAAGATGAGGCAGTGCTCAACAAAGTTTAA
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protein sequence of MDP0000267022

>MDP0000267022 ID=MDP0000267022; Name=MDP0000267022; organism=Malus x domestica; type=polypeptide; length=689bp
MTKGFSVFSSFPATFVNWPTTLLFVITDPRSSSSPESGSTISRAVIKFRK
RLEYPTYFSYLHHILCNNMISEAPNRDIEGAEVVDTNIHEITQESKPTVK
KRVGGWKLALILLANQGLATLAFFGVGVNLVLFLIRVLDQESATAANNVS
IWTGTVYLFSLVGAFLSDSYWGRYLTCAIFQVILVLGLGLLSLTSWLWLI
HPHGCGGVGNYCQPTSKVGVAFFYLSIYLIALGYGGHQPTIATFGADQFD
ESDPKQQFSKAAFFAYFYFALNVGCLFSNTILVXYEDKGLWTLGFLVSLG
SAILALVSYLAASPGYRYLKPCGNPLPRVAQVFVAAFRKLSVAPTSPDNL
YELEGTKSAIKGSRKILHSNEILFLDKAATITEKDQTADETNPWRLCTVT
QVEEAKCVLKMLPVWLCTIIYSVVFTQMASLFVEQGDVMESHIGKFHLPA
ASMSVFDICSVFICTGLYRNFLVPLAGRLSGNPKGLSELQRMGVGLIIGL
LAMVAAGATEIARLRGVTPGEKVSSLSIFWQIPQYVLVGTSEVFMYVGQL
EFFNGQAPDGIKSFGSSLCMASISLGNYVSSLLVNIVTHITARGGDPGWI
PNNLNEGHLDRFYFLIAILTALDFVVYLFCAKWYKGINLQSSEQEIEIME
NQKGNDLQGSXQETQITETQPGSSSNQGKAQDEAVLNKV
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mRNA from alignment at chr15:27267808..27270387-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000267022 ID=MDP0000267022; Name=MDP0000267022; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr15:27267808..27270387- (Malus x domestica
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mRNA from alignment at MDC000584.349:3512..6091-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000267022 ID=MDP0000267022; Name=MDP0000267022; organism=Malus x domestica; type=mRNA; length=2580bp; location=Sequence derived from: MDC000584.349:3512..6091- (Malus x domestica
ATGACAAAAGGGTTTTCCGTGTTTTCTAGTTTTCCGGCAACTTTTGTGAA
TTGGCCTACTACATTGCTGTTTGTGATTACCGATCCACGCTCTTCCTCAT
CACCGGAGTCCGGCTCAACAATTTCAAGAGCAGTGATCAAGTTTCGTAAA
AGGTTGGAATATCCAACATATTTCAGCTATCTTCATCATATATTRTGTAA
TAATGTAGCTTTACAGTTAATTTGTTATCAGTAGCACATAATTAACTTAG
TGTCCCCTACAAAATTGGCAGATGATAAGCGAAGCCCCTAACCGAGACAT
TGAAGGAGCAGAAGTTGTGGATACAAACATCCATGAGATAACTCAGGAGT
CCAAACCCACTGTCAAAAAGAGAGTAGGAGGATGGAAACTTGCACTTATC
TTGCTAGGTACTCATCATCGATGATATTCACTTTTCCTAGCATATATAGA
TTTTGCAATTCAAGATTATTTTCCATATCTCTCCAAATAGTATTAGGGAG
AACGATACACATTTTTCTTCGGTTATATTCATGTTATGTCTTATTCGGTG
CAGCGAACCAAGGCCTAGCAACACTAGCTTTCTTTGGTGTAGGAGTGAAC
TTGGTTTTGTTTCTGATCAGAGTTCTTGATCAAGAAAGTGCCACTGCGGC
AAACAATGTCAGCATATGGACTGGAACTGTTTATTTGTTCTCTCTAGTTG
GAGCATTCCTCAGTGACTCCTATTGGGGTCGTTACTTAACCTGCGCCATC
TTTCAAGTCATCCTTGTTCTGGTATAATATATACTTTTCTTTTTGAGATG
TCCCAAGTGAAKTTTTTGAATTGTTCTTCAAACATACATGTATAACAAAA
CTTAATGTTCGTTAATCAGGGCTTGGGGCTATTGTCCTTGACGTCTTGGC
TCTGGCTGATCCATCCGCACGGTTGCGGTGGTGTAGGAAATTACTGCCAG
CCAACATCCAAAGTTGGTGTGGCTTTCTTTTACCTATCAATATATCTAAT
CGCACTTGGATACGGTGGCCACCAACCAACTATTGCAACATTTGGAGCAG
ACCAATTCGACGAGAGTGATCCCAAACAACAATTTTCGAAAGCAGCTTTC
TTTGCTTACTTCTACTTTGCACTCAACGTTGGGTGTCTTTTCTCAAACAC
CATATTGGTTTWCTATGAGGATAAAGGTTTATGGACTCTGGGGTTTCTGG
TGTCATTAGGATCTGCTATCTTAGCCCTAGTGTCATATTTGGCAGCATCA
CCTGGGTACCGGTACCTAAAACCATGTGGCAACCCATTGCCACGCGTGGC
TCAGGTATTCGTGGCTGCCTTTAGAAAATTGAGTGTTGCTCCAACCAGCC
CGGAYAATCTTTATGAGCTGGAAGGAACAAAATCTGCAATCAAAGGGAGT
AGAAAGATTCTACACAGTAATGAGATTTTGTAAGTAATATTGCACTTTAA
CTGTATGTAAGTTAATTAAGTTAACTGTGGTTAGCTGAGCTCTAAAATAA
TGTCATCTGCACTTTTATCCTTTTTATTTTATCATGCCAGGAGTGCAAGA
TGGCATTTTAAGAGTAATAGAAGCTCTCTGATTTAATAGTTTTATTAGTT
TCCTAATATTTCAAGTTCTTTTTGTTAGGTTTTTGGACAAGGCAGCGACA
ATAACCGAGAAGGATCAAACTGCAGACGAAACAAATCCATGGAGGCTTTG
TACTGTAACTCAAGTTGAGGAAGCGAAATGCGTACTAAAAATGCTACCCG
TTTGGCTTTGCACCATAATTTACTCAGTGGTGTTTACACAGATGGCTTCA
CTTTTTGTGGAGCAAGGTGATGTGATGGAATCCCACATCGGAAAGTTTCA
CCTTCCGGCCGCCAGCATGTCTGTATTTGACATATGCAGTGTCTTTATCT
GCACAGGACTTTATCGCAATTTCCTTGTGCCTTTAGCCGGAAGGTTAAGT
GGGAACCCAAAAGGCCTATCCGAGCTTCAAAGAATGGGTGTAGGGCTTAT
TATTGGATTGTTGGCAATGGTTGCGGCCGGTGCCACGGAAATTGCTAGGC
TCAGAGGTGTTACACCAGGTGAGAAGGTAAGCTCACTAAGCATATTTTGG
CAAATCCCACAATATGTTCTTGTTGGTACTTCAGAAGTTTTTATGTATGT
GGGACAACTTGAGTTCTTCAATGGACAAGCCCCGGATGGGATTAAAAGCT
TTGGAAGTTCATTGTGCATGGCGTCGATATCTCTCGGAAACTATGTGAGC
AGCTTACTAGTTAACATAGTAACGCATATTACAGCTAGAGGTGGAGACCC
TGGTTGGATCCCAAATAATCTGAATGAAGGTCACTTGGATAGATTCTACT
TCCTCATTGCAATTCTAACAGCTTTGGATTTTGTGGTTTATTTGTTTTGT
GCTAAGTGGTACAAGGGAATCAACCTCCAAAGCTCTGAGCAGGAAATTGA
GATCATGGAAAATCAGAAGGGCAATGATCTCCAAGGTTCTGRGCAGGAAA
CTCAGATCACRGAAACTCAACCCGGAAGTTCATCAAATCAGGGAAAAGCA
CAAGATGAGGCAGTGCTCAACAAAGTTTAA
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Coding sequence (CDS) from alignment at MDC000584.349:3512..6091-

>MDP0000267022 ID=MDP0000267022; Name=MDP0000267022; organism=Malus x domestica; type=CDS; length=2070bp; location=Sequence derived from: MDC000584.349:3512..6091- (Malus x domestica
ATGACAAAAGGGTTTTCCGTGTTTTCTAGTTTTCCGGCAACTTTTGTGAA
TTGGCCTACTACATTGCTGTTTGTGATTACCGATCCACGCTCTTCCTCAT
CACCGGAGTCCGGCTCAACAATTTCAAGAGCAGTGATCAAGTTTCGTAAA
AGGTTGGAATATCCAACATATTTCAGCTATCTTCATCATATATTRTGTAA
TAATATGATAAGCGAAGCCCCTAACCGAGACATTGAAGGAGCAGAAGTTG
TGGATACAAACATCCATGAGATAACTCAGGAGTCCAAACCCACTGTCAAA
AAGAGAGTAGGAGGATGGAAACTTGCACTTATCTTGCTAGCGAACCAAGG
CCTAGCAACACTAGCTTTCTTTGGTGTAGGAGTGAACTTGGTTTTGTTTC
TGATCAGAGTTCTTGATCAAGAAAGTGCCACTGCGGCAAACAATGTCAGC
ATATGGACTGGAACTGTTTATTTGTTCTCTCTAGTTGGAGCATTCCTCAG
TGACTCCTATTGGGGTCGTTACTTAACCTGCGCCATCTTTCAAGTCATCC
TTGTTCTGGGCTTGGGGCTATTGTCCTTGACGTCTTGGCTCTGGCTGATC
CATCCGCACGGTTGCGGTGGTGTAGGAAATTACTGCCAGCCAACATCCAA
AGTTGGTGTGGCTTTCTTTTACCTATCAATATATCTAATCGCACTTGGAT
ACGGTGGCCACCAACCAACTATTGCAACATTTGGAGCAGACCAATTCGAC
GAGAGTGATCCCAAACAACAATTTTCGAAAGCAGCTTTCTTTGCTTACTT
CTACTTTGCACTCAACGTTGGGTGTCTTTTCTCAAACACCATATTGGTTT
WCTATGAGGATAAAGGTTTATGGACTCTGGGGTTTCTGGTGTCATTAGGA
TCTGCTATCTTAGCCCTAGTGTCATATTTGGCAGCATCACCTGGGTACCG
GTACCTAAAACCATGTGGCAACCCATTGCCACGCGTGGCTCAGGTATTCG
TGGCTGCCTTTAGAAAATTGAGTGTTGCTCCAACCAGCCCGGAYAATCTT
TATGAGCTGGAAGGAACAAAATCTGCAATCAAAGGGAGTAGAAAGATTCT
ACACAGTAATGAGATTTTGTTTTTGGACAAGGCAGCGACAATAACCGAGA
AGGATCAAACTGCAGACGAAACAAATCCATGGAGGCTTTGTACTGTAACT
CAAGTTGAGGAAGCGAAATGCGTACTAAAAATGCTACCCGTTTGGCTTTG
CACCATAATTTACTCAGTGGTGTTTACACAGATGGCTTCACTTTTTGTGG
AGCAAGGTGATGTGATGGAATCCCACATCGGAAAGTTTCACCTTCCGGCC
GCCAGCATGTCTGTATTTGACATATGCAGTGTCTTTATCTGCACAGGACT
TTATCGCAATTTCCTTGTGCCTTTAGCCGGAAGGTTAAGTGGGAACCCAA
AAGGCCTATCCGAGCTTCAAAGAATGGGTGTAGGGCTTATTATTGGATTG
TTGGCAATGGTTGCGGCCGGTGCCACGGAAATTGCTAGGCTCAGAGGTGT
TACACCAGGTGAGAAGGTAAGCTCACTAAGCATATTTTGGCAAATCCCAC
AATATGTTCTTGTTGGTACTTCAGAAGTTTTTATGTATGTGGGACAACTT
GAGTTCTTCAATGGACAAGCCCCGGATGGGATTAAAAGCTTTGGAAGTTC
ATTGTGCATGGCGTCGATATCTCTCGGAAACTATGTGAGCAGCTTACTAG
TTAACATAGTAACGCATATTACAGCTAGAGGTGGAGACCCTGGTTGGATC
CCAAATAATCTGAATGAAGGTCACTTGGATAGATTCTACTTCCTCATTGC
AATTCTAACAGCTTTGGATTTTGTGGTTTATTTGTTTTGTGCTAAGTGGT
ACAAGGGAATCAACCTCCAAAGCTCTGAGCAGGAAATTGAGATCATGGAA
AATCAGAAGGGCAATGATCTCCAAGGTTCTGRGCAGGAAACTCAGATCAC
RGAAACTCAACCCGGAAGTTCATCAAATCAGGGAAAAGCACAAGATGAGG
CAGTGCTCAACAAAGTTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000109POT_fam
IPR016196Major facilitator superfamily domain, general substrate transporter
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0006857oligopeptide transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane