MDP0000271129, MDP0000271129 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000271129
Unique NameMDP0000271129
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length366
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000271129_exon_1MDP0000271129_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000271129MDP0000271129Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 12..80
score: 4.8
IPR000504RNA recognition motif domainSMARTSM00360RNA recognition motifcoord: 10..83
score: 1
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 9..87
score: 17
IPR012677Nucleotide-binding, alpha-beta plaitGENE3D3.30.70.330no descriptioncoord: 7..89
score: 4.7
NoneNo IPR availablePANTHERPTHR24011FAMILY NOT NAMEDcoord: 10..90
score: 8.8
NoneNo IPR availablePANTHERPTHR24011:SF270 ATE1 (ATPASE E1); NUCLEIC ACID BINDINGcoord: 10..90
score: 8.8
NoneNo IPR availableSEGsegsegcoord: 62..73
score: NAcoord: 101..112
score
NoneNo IPR availableSUPERFAMILY54928RNA-binding domain, RBDcoord: 2..108
score: 1.4
NoneNo IPR availableSEGsegsegcoord: 33..47
score: NAcoord: 58..80
score
NoneNo IPR availableSEGsegsegcoord: 12..21
score: NAcoord: 60..73
score
NoneNo IPR availableSEGsegsegcoord: 74..85
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000271129 ID=MDP0000271129; Name=MDP0000271129; organism=Malus x domestica; type=mRNA; length=366bp
ATGGCGCAGCAAGCAGTGCAGAAGAACACGATGTACGTCGGAGGACTGGC
GGAGGAGGTGAACGAGTCGATACTCCACGCGGCGTTCATACCCTTTGGGG
ACATCAAGGACGTAAAGACGCCGCTGGATCAAGCCACCCAGAAGCACCGC
TCTTTTGGGTTCGTCACGTTTTTGGAGAGGGAGGACGCCGCCGCTGCCAT
GGACAATATGGACGGCGCCGAGCTCTACGGCCGAGTCCTCACCGTCAATT
ACGCCCTACCTGAGAAAATCAAGGGCGGTGAACAGGGTTGGGCCGCCCAG
CCCAGTAAGTCCTCTTCCCCTTTACTCCTTATCTCTTACATTGTTGGTAC
TTGTGTGGGGATTTGA
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protein sequence of MDP0000271129

>MDP0000271129 ID=MDP0000271129; Name=MDP0000271129; organism=Malus x domestica; type=polypeptide; length=121bp
MAQQAVQKNTMYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHR
SFGFVTFLEREDAAAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAQ
PSKSSSPLLLISYIVGTCVGI
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mRNA from alignment at chr16:2389204..2389569+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000271129 ID=MDP0000271129; Name=MDP0000271129; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr16:2389204..2389569+ (Malus x domestica
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mRNA from alignment at MDC003581.249:1497..1862+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000271129 ID=MDP0000271129; Name=MDP0000271129; organism=Malus x domestica; type=mRNA; length=366bp; location=Sequence derived from: MDC003581.249:1497..1862+ (Malus x domestica
ATGGCGCAGCAAGCAGTGCAGAAGAACACGATGTACGTCGGAGGACTGGC
GGAGGAGGTGAACGAGTCGATACTCCACGCGGCGTTCATACCCTTTGGGG
ACATCAAGGACGTAAAGACGCCGCTGGATCAAGCCACCCAGAAGCACCGC
TCTTTTGGGTTCGTCACGTTTTTGGAGAGGGAGGACGCCGCCGCTGCCAT
GGACAATATGGACGGCGCCGAGCTCTACGGCCGAGTCCTCACCGTCAATT
ACGCCCTACCTGAGAAAATCAAGGGCGGTGAACAGGGTTGGGCCGCCCAG
CCCAGTAAGTCCTCTTCCCCTTTACTCCTTATCTCTTACATTGTTGGTAC
TTGTGTGGGGATTTGA
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Coding sequence (CDS) from alignment at MDC003581.249:1497..1862+

>MDP0000271129 ID=MDP0000271129; Name=MDP0000271129; organism=Malus x domestica; type=CDS; length=366bp; location=Sequence derived from: MDC003581.249:1497..1862+ (Malus x domestica
ATGGCGCAGCAAGCAGTGCAGAAGAACACGATGTACGTCGGAGGACTGGC
GGAGGAGGTGAACGAGTCGATACTCCACGCGGCGTTCATACCCTTTGGGG
ACATCAAGGACGTAAAGACGCCGCTGGATCAAGCCACCCAGAAGCACCGC
TCTTTTGGGTTCGTCACGTTTTTGGAGAGGGAGGACGCCGCCGCTGCCAT
GGACAATATGGACGGCGCCGAGCTCTACGGCCGAGTCCTCACCGTCAATT
ACGCCCTACCTGAGAAAATCAAGGGCGGTGAACAGGGTTGGGCCGCCCAG
CCCAGTAAGTCCTCTTCCCCTTTACTCCTTATCTCTTACATTGTTGGTAC
TTGTGTGGGGATTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding