MDP0000277127, MDP0000277127 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000277127
Unique Name	MDP0000277127
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1008

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr13	chromosome	chr13:3741618..3742625 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC005007.191	contig	MDC005007.191:13589..14596 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000277127_exon_1	MDP0000277127_exon_1	Malus x domestica	CDS

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COIL	coil	coiled-coil	coord: 204..225 score
None	No IPR available	SEG	seg	seg	coord: 87..98 score: NAcoord: 133..144 score: NAcoord: 158..172 score: NAcoord: 216..225 score: NAcoord: 280..295 score
None	No IPR available	SEG	seg	seg	coord: 20..34 score: NAcoord: 38..49 score
None	No IPR available	SEG	seg	seg	coord: 3..16 score
None	No IPR available	SEG	seg	seg	coord: 35..50 score
None	No IPR available	SEG	seg	seg	coord: 15..27 score
None	No IPR available	SEG	seg	seg	coord: 30..39 score
None	No IPR available	SEG	seg	seg	coord: 6..39 score
None	No IPR available	SEG	seg	seg	coord: 1..19 score: NAcoord: 23..34 score

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at chr13:3741618..3742625-
mRNA from alignment at MDC005007.191:13589..14596-
coding sequence from alignment at MDC005007.191:13589..14596-

mRNA sequence

>MDP0000277127 ID=MDP0000277127; Name=MDP0000277127; organism=Malus x domestica; type=mRNA; length=1008bp
ATGTCCATGATTAGTACAGGGGTGCTTTCAGCAGACCCCGGAGCTGATAA
GATACACAAGAAATTGTTCCACCACAGGAACGACTCCGGCGAGCTCGATG
TTTTTGAAGCTGCAAGGTACTTCTCAGGATACAATGAAGCTCCCAGCAGC
CATAAAAACAACAAGACATCGGCATTTTCGCAGAGGATGATGAAAGAAGA
CAGATCGTCATGGAGAGGAGGCAGAATCAGCCTTGACATGCCTATCAGAC
ACATGCTCCATCATCCTCAGCAAAACCCTAATCACCATAACCAAGTGGCG
ATGGAAAAGCAAAGCAACATCAAAGACAAGAAGTACAAGCAACCAAGCTC
TCCAGGCGGGAGGCTGGCCAGCTTCCTGAATTCTCTATTCAACCAATCGG
CGTCCAAGAAGAAGAAGTCGAAATCCAGCGCCACACAGTCCATGAAAGAT
GAGGAGGAGAGCCCGGGTGGGAGAAGGAAGAGGAGGAGCAGCATTAGTCA
TTTTCGAAGCTCTAGCACCACGGATGCCAAGTCCGTGTATTCCTCATCCA
GTTCAGGATTTCGAACACCTCCACCTTATAGCCATGCTCAAATGGTAGCC
TCCAATAGCTACAAAGATTTGAGAAGCTATTCGGATAATCACGAGCAGCA
ATATCAACAGCAGCAGCAGCAGCAAACGGTTTCCTTATCAAAGTACAATA
CGAACTTCGATGAGAAAAGATCATCAAACAAAGAACTGACTTGGTTGGAT
CATGAGAAGTTCAAATTATCGGAGAAGTATAAGATTAGTTCCGACCAGGA
CCACAAGGGTTTGCTCAGGAGGCTCAGTGAGGTTGTTGATGACGAGCGGG
AAGATGAAGGTGCAGAGAGTGATTCGAGCTCTGATCTTTTCGAGCTGCAG
AATTATGACTTGGGTTATTACTCGAGCGGCCTTCCTGTGTACGAAACTAC
AAATGTAGACAACATCAAGATCAGATCAGTAACACCAATTTCCAATGCCT
CATCCTAA

mRNA from alignment at chr13:3741618..3742625-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000277127 ID=MDP0000277127; Name=MDP0000277127; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:3741618..3742625- (Malus x domestica

mRNA from alignment at MDC005007.191:13589..14596-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000277127 ID=MDP0000277127; Name=MDP0000277127; organism=Malus x domestica; type=mRNA; length=1008bp; location=Sequence derived from: MDC005007.191:13589..14596- (Malus x domestica
ATGTCCATGATTAGTACAGGGGTGCTTTCAGCAGACCCCGGAGCTGATAA
GATACACAAGAAATTGTTCCACCACAGGAACGACTCCGGCGAGCTCGATG
TTTTTGAAGCTGCAAGGTACTTCTCAGGATACAATGAAGCTCCCAGCAGC
CATAAAAACAACAAGACATCGGCATTTTCGCAGAGGATGATGAAAGAAGA
CAGATCGTCATGGAGAGGAGGCAGAATCAGCCTTGACATGCCTATCAGAC
ACATGCTCCATCATCCTCAGCAAAACCCTAATCACCATAACCAAGTGGCG
ATGGAAAAGCAAAGCAACATCAAAGACAAGAAGTACAAGCAACCAAGCTC
TCCAGGCGGGAGGCTGGCCAGCTTCCTGAATTCTCTATTCAACCAATCGG
CGTCCAAGAAGAAGAAGTCGAAATCCAGCGCCACACAGTCCATGAAAGAT
GAGGAGGAGAGCCCGGGTGGGAGAAGGAAGAGGAGGAGCAGCATTAGTCA
TTTTCGAAGCTCTAGCACCACGGATGCCAAGTCCGTGTATTCCTCATCCA
GTTCAGGATTTCGAACACCTCCACCTTATAGCCATGCTCAAATGGTAGCC
TCCAATAGCTACAAAGATTTGAGAAGCTATTCGGATAATCACGAGCAGCA
ATATCAACAGCAGCAGCAGCAGCAAACGGTTTCCTTATCAAAGTACAATA
CGAACTTCGATGAGAAAAGATCATCAAACAAAGAACTGACTTGGTTGGAT
CATGAGAAGTTCAAATTATCGGAGAAGTATAAGATTAGTTCCGACCAGGA
CCACAAGGGTTTGCTCAGGAGGCTCAGTGAGGTTGTTGATGACGAGCGGG
AAGATGAAGGTGCAGAGAGTGATTCGAGCTCTGATCTTTTCGAGCTGCAG
AATTATGACTTGGGTTATTACTCGAGCGGCCTTCCTGTGTACGAAACTAC
AAATGTAGACAACATCAAGATCAGATCAGTAACACCAATTTCCAATGCCT
CATCCTAA

Coding sequence (CDS) from alignment at MDC005007.191:13589..14596-

>MDP0000277127 ID=MDP0000277127; Name=MDP0000277127; organism=Malus x domestica; type=CDS; length=1008bp; location=Sequence derived from: MDC005007.191:13589..14596- (Malus x domestica
ATGTCCATGATTAGTACAGGGGTGCTTTCAGCAGACCCCGGAGCTGATAA
GATACACAAGAAATTGTTCCACCACAGGAACGACTCCGGCGAGCTCGATG
TTTTTGAAGCTGCAAGGTACTTCTCAGGATACAATGAAGCTCCCAGCAGC
CATAAAAACAACAAGACATCGGCATTTTCGCAGAGGATGATGAAAGAAGA
CAGATCGTCATGGAGAGGAGGCAGAATCAGCCTTGACATGCCTATCAGAC
ACATGCTCCATCATCCTCAGCAAAACCCTAATCACCATAACCAAGTGGCG
ATGGAAAAGCAAAGCAACATCAAAGACAAGAAGTACAAGCAACCAAGCTC
TCCAGGCGGGAGGCTGGCCAGCTTCCTGAATTCTCTATTCAACCAATCGG
CGTCCAAGAAGAAGAAGTCGAAATCCAGCGCCACACAGTCCATGAAAGAT
GAGGAGGAGAGCCCGGGTGGGAGAAGGAAGAGGAGGAGCAGCATTAGTCA
TTTTCGAAGCTCTAGCACCACGGATGCCAAGTCCGTGTATTCCTCATCCA
GTTCAGGATTTCGAACACCTCCACCTTATAGCCATGCTCAAATGGTAGCC
TCCAATAGCTACAAAGATTTGAGAAGCTATTCGGATAATCACGAGCAGCA
ATATCAACAGCAGCAGCAGCAGCAAACGGTTTCCTTATCAAAGTACAATA
CGAACTTCGATGAGAAAAGATCATCAAACAAAGAACTGACTTGGTTGGAT
CATGAGAAGTTCAAATTATCGGAGAAGTATAAGATTAGTTCCGACCAGGA
CCACAAGGGTTTGCTCAGGAGGCTCAGTGAGGTTGTTGATGACGAGCGGG
AAGATGAAGGTGCAGAGAGTGATTCGAGCTCTGATCTTTTCGAGCTGCAG
AATTATGACTTGGGTTATTACTCGAGCGGCCTTCCTGTGTACGAAACTAC
AAATGTAGACAACATCAAGATCAGATCAGTAACACCAATTTCCAATGCCT
CATCCTAA