MDP0000298577, MDP0000298577 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000298577
Unique Name	MDP0000298577
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	6087

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr16	chromosome	chr16:786479..792565 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC013096.127	contig	MDC013096.127:17459..23545 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000298577_exon_1	MDP0000298577_exon_1	Malus x domestica	CDS
MDP0000298577_exon_2	MDP0000298577_exon_2	Malus x domestica	CDS
MDP0000298577_exon_3	MDP0000298577_exon_3	Malus x domestica	CDS
MDP0000298577_exon_4	MDP0000298577_exon_4	Malus x domestica	CDS
MDP0000298577_exon_5	MDP0000298577_exon_5	Malus x domestica	CDS
MDP0000298577_exon_6	MDP0000298577_exon_6	Malus x domestica	CDS
MDP0000298577_exon_7	MDP0000298577_exon_7	Malus x domestica	CDS
MDP0000298577_exon_8	MDP0000298577_exon_8	Malus x domestica	CDS
MDP0000298577_exon_9	MDP0000298577_exon_9	Malus x domestica	CDS
MDP0000298577_exon_10	MDP0000298577_exon_10	Malus x domestica	CDS
MDP0000298577_exon_11	MDP0000298577_exon_11	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000298577	MDP0000298577	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002293	Amino acid/polyamine transporter I	PANTHER	PTHR11785	FAMILY NOT NAMED	coord: 204..709 score: 2.2e
IPR002293	Amino acid/polyamine transporter I	PANTHER	PTHR11785	FAMILY NOT NAMED	coord: 15..98 score: 1.1
IPR004756	Amino acid permease subfamily	TIGRFAMs	TIGR00907	2A0304: amino acid permease	coord: 212..703 score: 2.4e
IPR004840	Amino acid permease, conserved site	PROSITE	PS00218	AMINO_ACID_PERMEASE_1	coord: 255..286 score
IPR004840	Amino acid permease, conserved site	PROSITE	PS00218	AMINO_ACID_PERMEASE_1	coord: 40..71 score
None	No IPR available	PANTHER	PTHR11785:SF13	AMINO ACID PERMEASE-RELATED	coord: 204..709 score: 2.2e
None	No IPR available	PFAM	PF13520	AA_permease_2	coord: 225..683 score: 3.5
None	No IPR available	SEG	seg	seg	coord: 144..157 score: NAcoord: 225..239 score: NAcoord: 469..479 score
None	No IPR available	PANTHER	PTHR11785:SF13	AMINO ACID PERMEASE-RELATED	coord: 15..98 score: 1.1
None	No IPR available	SEG	seg	seg	coord: 1..13 score
None	No IPR available	SEG	seg	seg	coord: 24..41 score
None	No IPR available	SEG	seg	seg	coord: 31..47 score
None	No IPR available	SEG	seg	seg	coord: 34..46 score
None	No IPR available	SEG	seg	seg	coord: 24..40 score
None	No IPR available	SEG	seg	seg	coord: 90..99 score
IPR004841	Amino acid permease domain	PFAM	PF00324	AA_permease	coord: 27..95 score: 5.9

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:786479..792565-
mRNA from alignment at MDC013096.127:17459..23545-
coding sequence from alignment at MDC013096.127:17459..23545-

mRNA sequence

>MDP0000298577 ID=MDP0000298577; Name=MDP0000298577; organism=Malus x domestica; type=mRNA; length=6087bp
ATGGAGGAGGAGGAAGGTCCTTATCAGCCTCTTCAAGGCGGGGACGCCAT
TTCTTCCGACGACACTCGCCTGAACCAGCTCGGTTACAAGCAAGAGCTCA
GTCGTCACCTCTCGTATGAACCCTATCCCCTTGAATTTCATTTTACCCTT
AACTTCTTCTGTACTTGAATCTGATTCTGCTGTATATCTGAAAGCACTTT
TGAGTTTTGACCTTTCTGTATTGGGGCTGCTGGGTTTATGCAGTTAAAGC
ACTTTTCATTGTGTGTGCATTTTGTTTCCCACATCACAATCACATATTTT
TCAGTTCTGTTTACTTCTGGATAATTATCATTTATTCATCACAGCTGTTT
TGGACTTTTAGTCGTTGAATATCAGTTCTAACATGAGCACATATAATATG
ATTGCTAATTTCCACTAAAATATCGAAAATGCATCAGATATTTTGGTATA
TTTCTTGTCACTCTCAACTACTGTTTAAAATATTAATATAGGAATAACGA
GAAGCAAATTTATAAAAATATCGATATAGGTTGTCTTGAACATTTGCAAT
AGGGTGAATATATCAACTCATTTATATTTAGTCGAACTTAGAAAAAAAAT
AAAAAGAAAAWTGAAAGTTTGAAACCTGCAATGGCAAAATATTTGTAGTG
AATCTTCATAAATTTTCCTATATCCACAATTTCATAGATATTTTAAACCA
GGAAAAGCTCCTTTCTTTTAATTTTCAATGTTTCAAATTGCTTGGGGTTT
CATGCCATCTATTTCTTTTGCATATTTTCCTGGCCGTTGTTTTTGAACAT
CATTTATTGATTCAACATGTCACATTAGAGAGTGACTTTGAATAATATTT
TTAAACAAATATCTAGTCAATTTATTTTAATTTTCTACTTTTCCGCCTAA
TAATTTAATTGGTCACACTGAATAAATAACTTACTTAGTTACGACCCAAT
CTGCAGTCAAAATGTTACAAACGAAGAATAAAAAGAGAAATAACAACTTA
CGTGTATAGATAACATTACAAAATCGAATCTAAAATTCTTGATTTCTAAA
TTAAGTAATTTGTTAGGCAAGACGAGAAAATCCAAAAGGACAAGGATTGT
CTACCTTTCTACTTCCGGTGCCCTTCCGTGCCCTCTTATTTGTGTGGTCA
CGGTTAAACCACGTCAACATTTTATATATACTATTCATTTTTGTCTTATT
ATTTCTATAAAAAAAATATAAAATGTTGACATGACTTAACCGTGATCACA
CAAAACAACAGGATACGGAAGGGCAAACAATCCTTGTCCAATCCAAAATT
GTACATAACCTCGTGTAACTCGTTTTTGTGATCTTGATTTTCAAGAGCAA
AAAAAGGGTAGGAATGCGCTACTCACACGGTGCATGTTACGTTGTGTAGG
GCAATAGCCAATTTCTCGATGACTTTCTCCATCATATCGGTTCTGACCGG
TCTGAACACAACGTACAGTATGGGCCTCAGATATGGTGGGCCCGTTACCA
TGGTCTACGGGTGGCCCGTAGTGGGCTTTCTCACACTTCTGGTGGGCCTG
TCCATGGCCGAGATTTGCTCTGCTTTTCCAACTTCTGGTGGGCTCTACTT
CTGGAGCGCCAAACTCGCTGGCAAACGATGGGGCGCTTTCGCTTCTTGGC
TCACTGGCTGGTACGTTTTTTATTTTTTCTCTTTTGATTTTTTTTTTTTK
TAAAAATATTTTTATTTGTTTCTGTTAAGTTTTTTTTTTTTTTTTTTTTT
TTTGATGAAGTATTAAATATAGCATTAGCATTTAGAATCAAATTATTTTG
TTATTTAAGCGATTTTCTAATATAATTTTAATCGTGGAAAAAACATTTCA
AATTTAATTAACTCCAAAGAAAAGTAGCATGCTGTTTTAACTAAATTTAA
CTCCTAATAAATTTGAATATTAATGTGTTAATTTTGGTGGATATGGGCCA
AAGATAATTTAGAGCCCAATTTATGAAGTGGGCCTCCACAATTCGTGTGC
TCAAGTATTAAGGAAGTCGTCGGCCCACGACCCATTTAGTGGGACCATCA
CTGTTGTTCGTCCATTGACGGGATATTTTTGAGGAATTTTTAACTTGTTC
ATTGATTGATTAATAGTTTGTTTAATCACTAATCCACTATTACTATTCTA
ATTAGACGGTCACATGGGATACTCGGTCAAATATTCAGATTCAAAACTAC
TAATCATTTGAGATCAGAATCTCTCGTAATTGCATTTTATTGACTTTTAT
ATTCAATAAATTACGCACGGACGAGTGTATGATAATTATTTTCTAGTATC
AATAACCGGAGTGATATTTTCTGTCAACATGAGAAATTTTTTAATGTATC
GAAAATATGGTTCGATATACCGAGTATTGTAATACAAGTAATTAAAAGTT
TTCCTTTATGCGTTCAATCATTTATATTATGATATTTAATGTACTCAACT
TTATTTTCAATATGGTGAAAAATCTCTTGAGTAACATGATTTGCCTGTCC
TATCATTTATTGGGGTTGTCACTTGTGGTATGACACTAGTTTGTCCTCCC
ATATCTGTAATTGCCATGCTATCAATGACCTTTCACAAATAATTTGTCAG
CTCATGAAAATTCAAAACTTTGTTTTATTTGGAAGATTACACACACGACT
TTGTCTGTTAATAAATCGTGTTTAATTCGGTTTCAATTAACAGAAAGTGA
ATGGATGAGATTTTAGAAACGATCATATTTAAATTTGATAATTTAATTAT
GAATAAATTCGTATGTATGGATCAATGCAGATTCATTCCGAACCTTGTTA
CACACGTGTGTTAGATTCGAAATTTGCAACGTATCATATAACAACCCTTT
CCTTAGAGTTACGTGTTGCTTCATCTTTGAAGCCAAAATATACATGATAA
GAAAATTCAGCGTTCACACCAAACAAATAGGAACCCAAAGATTTGGCACC
AATTCCTGAAAATGTTTATGGGATGAACACGCCATTAACAGAAAAATTAA
TTAAAATAATTATATTGTCGTTGGGGAAGTCCAAAGACCCAAAGTCCATG
CCCTGCCACGTTGGGAGCATCATCTTCTCCGCGCGACAAGGTGCATTGCC
TACTGGTACTGGCTGATCTGTTTGGCCTCACCTCTTCTTCCTAAAGCTCC
GTTCTTTGTTTTTCTATTCCCACCCATCCCGTTGACTATTCCCACCCTGC
CAAGAAGTCAAGGAAACAGAATACCAGAAGAGATTTGGGTTTGATTCTTT
GAATCCAAGAACAAATGGTGAGTGGTGGCGGTGACAGAATGGCACTGCCG
TCTCATCAGCCTCCAAACGGTGGCGTTTCACAGGATTCCGGCCACGCCCG
CCTCCACGAACTCGGCTACAAGCAAGAGCTCAAGCGTGACCTCTCGTAAT
TTTTCAAAACTTCCACTCTTTTACTTCGTTTTGAATCCAAAGCTTCAAGC
TTTACTGATTTCTGAGGTTTTTTTGGTTGATGGGTTGGCTGGTTTGGAAT
TGCAGGCTGCTTTCAAATTTTGCGTTTTCGTTTTCCATCATATCGGTGCT
CACCGGAGTGACCACTCTGTATAATACTGGGCTGAGATACGGCGGCCCTG
TGTCTTTCGTTTATGGGTGGTTTATAACGGGTGTCTTCACCGTCTTCGTT
GGGTTGTCAATGGGGGAGATTTGCTCCTCGTACCCAACTTCTGGGGGGCT
GTACTACTGGAGTGCCAAGCTTGCTGGCCCCAAATGGGCACCCTTTGCTT
CTTGGCTCACTGGCTGGTACTACTTTCCTCTCCTTTCAGTTCTTTTACTT
TTACTAACAGTGCTACTCACTCACTTTGGATTTGATTGCTTAGAAAATGA
ATAAAATTTTGGAGTTTTGTCTGTGAGTATGTGTTTAAGTAGTTTTTACT
GGTTTGAAAATCAATCCTTCATTGCTATGATGCTTCATTGCTAGGATTGG
ATCGGATTGGATAAGTTACTAGATCCAGCGTATGTTGAAGACATGTATGT
CAACTTCCAAATTTTGTGAAGGAAACTTGATTTGGCATAGGTTGGTGTGT
AGTTCTTTTTTTGGTTGCTCACAATCGTGGTGGGGATTAAATGTAGGACA
TGCTCAACATGAATAGCTCTGTCTTTAGATAAGGTAAATTAGACATCAGG
ACGGTGATGATGATCAGTTTTAGTAGAATTTATGTGGAATGAAGGAGGGA
ATAGGCTCTGATGCATCCGCTTAAGAGTTTTTTTTTTTTCGCTTGTGATG
TCTCAAAGATACTAGAATGATGATATGATTACCATGTTATTCTGAGCCTA
AAACTGAAATGTATATTGCCCTGCAACTTTAATCACAAGACAGTTCCAAG
TTGGTCTTTCTGCCATACTATTTCTGACGACGGTAAATGTTTTTATGTTT
TGCAGGTTCAACATAGTTGGTCAGGTACTTCCATGAATTTTTACATTCTA
GAGTTTAAATTCCTCCATTGTTCATTGTGATATCAAGCTTGTTATGGCTG
TGATATAATCCATTATAAGCTCTAACTGCATTTATACCTTTAAATTGCAG
TGGGCAGTTACAACTAGCGTGGATTTCTCACTTGCACAGCTGATTAACGT
GATCGTTCTCCTTAGCACACGTGGAGGGAATGGTGGTGATGGCACTTCGA
TAAATAAGTACGGAACCATTGGTATCCATGCAGGAATCTTGTTTCTACAT
GCTCTTATAAACAGTCTGCCCATCTCGTACTTATCTTTGTTTGGACAAGT
CGCTGCTGCGTGGAATGTTGCAGGTGTAAATTACAATGTATTTTCAAGCT
CTTTTTTGCTCGTTTTCAGTTTACTGTTTGAGGCCTTCTATATCTTGTAT
TTCTTATTGCTTTTGGAATATTAGGTGTCTTTCTCCTCATGATTCTCATA
CCCTGTGTTGCAACGGAGAGGGCTAGTGCGAAGTTTGTATTCACTCACTT
CAACACTGATAACGGGGAGGGAATCAGCAACAAATTTCACATTTTTGTTC
TGGGACTTCTGTTGAGTCAATATACCATAACTGGCTATGATGCTTCTGCC
CATATGGTTAGTATATATTTCCCTTACTTTGAAATTACTTGGCCAAATAA
TTCTAACTAAATCCTTGTGTTTCCGTCAACTTCTGTTTCTAGACAGAGGA
AACAAAGAACGCTGATACGAATGGACCAAAAGGAATAATTAGTTCCATCG
TGATATCCATTATCGTTGGATGGGGTTATATACTCGGCATCACCTTTGCA
GTTACTAACATCCCGTACCTTTTGGATGAGAACAATGAAGCTGGCGGTTA
TGCCATTGCTGAAATATTTTACCTTGCATTCAAGAGTAGATACGGCAGTG
GAGTTGGAGGAATTGTATGCTTGGGAGTGGTTGCGGTTGCCATATTCTTC
TGTGGTATGAGTTCAGTTACTAGCAACTCCAGGTAAGCAAGCCTGTTTTA
TTCTTCTCCTACAACAAGAGCCATCTGGGTAGGTTTTAGTCTCTCAGCTG
TTCGCTGCACTTAATTTTCTTCTCAGGATGGTGTATGCATTCTCTAGAGA
TGGAGCCATGCCATTATCACCATTTTGGCATAAAGTGAACAAACACGAAG
TCCCCGTAAACGCTGTTTGGCTTTCTGCTTTCATATCGTTTTGCATGGCA
CTAACAGTAAGCACATGATCACTTGTAGCAAAAATTTTATTTCTGCTTTC
TTCGGCAACTGCTAACCATGTTTGTTTCGATCTTTGCAGTCTCTCGGAAG
CCTTGTGGCATTCAATGCCATGGTTTCTATAGCAACCATTGGACTGTACA
TTGCTTATGCCCTACCCATCTTTTTTAGGGTGACCATGGCACGCAAATCC
TTTGTCCCGGGACCTTTCAACTTGGGACGCTACGGGGTCCTTGTTGGTTG
GATTTCAGTTCTTTGGGTAGCAACTATCTCTGTCCTCTTCTCGTTGCCCG
TGGCCTATCCAATTACCATCGAGACACTCAACTATACTCCCGTTGCTGTT
GGCGGTTTGCTGATCATCACAGTTTTAGCTTGGATCCTGAGCGCTCGGCA
CTGGTTTAAAGGTCCTATAACGAACATAGAAGCATGA

protein sequence of MDP0000298577

>MDP0000298577 ID=MDP0000298577; Name=MDP0000298577; organism=Malus x domestica; type=polypeptide; length=709bp
MEEEEGPYQPLQGGDAISSDDTRLNQLGYKQELSRHLSQFLDDFLHHIGS
DRSEHNVQYGPQIWWARYHGLRVARSGLSHTSGGPVHGRDLLCFSNFWWA
LLLERQTRWQTMGRFRFLAHWLEPKDLAPIPENVYGMNTPLTEKLIKIII
LSLGKSKDPKSMPCHVGSIIFSARQGALPTEQMVSGGGDRMALPSHQPPN
GGVSQDSGHARLHELGYKQELKRDLSLLSNFAFSFSIISVLTGVTTLYNT
GLRYGGPVSFVYGWFITGVFTVFVGLSMGEICSSYPTSGGLYYWSAKLAG
PKWAPFASWLTGWFNIVGQWAVTTSVDFSLAQLINVIVLLSTRGGNGGDG
TSINKYGTIGIHAGILFLHALINSLPISYLSLFGQVAAAWNVAGVFLLMI
LIPCVATERASAKFVFTHFNTDNGEGISNKFHIFVLGLLLSQYTITGYDA
SAHMTEETKNADTNGPKGIISSIVISIIVGWGYILGITFAVTNIPYLLDE
NNEAGGYAIAEIFYLAFKSRYGSGVGGIVCLGVVAVAIFFCGMSSVTSNS
RMVYAFSRDGAMPLSPFWHKVNKHEVPVNAVWLSAFISFCMALTSLGSLV
AFNAMVSIATIGLYIAYALPIFFRVTMARKSFVPGPFNLGRYGVLVGWIS
VLWVATISVLFSLPVAYPITIETLNYTPVAVGGLLIITVLAWILSARHWF
KGPITNIEA

mRNA from alignment at chr16:786479..792565-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000298577 ID=MDP0000298577; Name=MDP0000298577; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr16:786479..792565- (Malus x domestica

mRNA from alignment at MDC013096.127:17459..23545-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000298577 ID=MDP0000298577; Name=MDP0000298577; organism=Malus x domestica; type=mRNA; length=6087bp; location=Sequence derived from: MDC013096.127:17459..23545- (Malus x domestica
ATGGAGGAGGAGGAAGGTCCTTATCAGCCTCTTCAAGGCGGGGACGCCAT
TTCTTCCGACGACACTCGCCTGAACCAGCTCGGTTACAAGCAAGAGCTCA
GTCGTCACCTCTCGTATGAACCCTATCCCCTTGAATTTCATTTTACCCTT
AACTTCTTCTGTACTTGAATCTGATTCTGCTGTATATCTGAAAGCACTTT
TGAGTTTTGACCTTTCTGTATTGGGGCTGCTGGGTTTATGCAGTTAAAGC
ACTTTTCATTGTGTGTGCATTTTGTTTCCCACATCACAATCACATATTTT
TCAGTTCTGTTTACTTCTGGATAATTATCATTTATTCATCACAGCTGTTT
TGGACTTTTAGTCGTTGAATATCAGTTCTAACATGAGCACATATAATATG
ATTGCTAATTTCCACTAAAATATCGAAAATGCATCAGATATTTTGGTATA
TTTCTTGTCACTCTCAACTACTGTTTAAAATATTAATATAGGAATAACGA
GAAGCAAATTTATAAAAATATCGATATAGGTTGTCTTGAACATTTGCAAT
AGGGTGAATATATCAACTCATTTATATTTAGTCGAACTTAGAAAAAAAAT
AAAAAGAAAAWTGAAAGTTTGAAACCTGCAATGGCAAAATATTTGTAGTG
AATCTTCATAAATTTTCCTATATCCACAATTTCATAGATATTTTAAACCA
GGAAAAGCTCCTTTCTTTTAATTTTCAATGTTTCAAATTGCTTGGGGTTT
CATGCCATCTATTTCTTTTGCATATTTTCCTGGCCGTTGTTTTTGAACAT
CATTTATTGATTCAACATGTCACATTAGAGAGTGACTTTGAATAATATTT
TTAAACAAATATCTAGTCAATTTATTTTAATTTTCTACTTTTCCGCCTAA
TAATTTAATTGGTCACACTGAATAAATAACTTACTTAGTTACGACCCAAT
CTGCAGTCAAAATGTTACAAACGAAGAATAAAAAGAGAAATAACAACTTA
CGTGTATAGATAACATTACAAAATCGAATCTAAAATTCTTGATTTCTAAA
TTAAGTAATTTGTTAGGCAAGACGAGAAAATCCAAAAGGACAAGGATTGT
CTACCTTTCTACTTCCGGTGCCCTTCCGTGCCCTCTTATTTGTGTGGTCA
CGGTTAAACCACGTCAACATTTTATATATACTATTCATTTTTGTCTTATT
ATTTCTATAAAAAAAATATAAAATGTTGACATGACTTAACCGTGATCACA
CAAAACAACAGGATACGGAAGGGCAAACAATCCTTGTCCAATCCAAAATT
GTACATAACCTCGTGTAACTCGTTTTTGTGATCTTGATTTTCAAGAGCAA
AAAAAGGGTAGGAATGCGCTACTCACACGGTGCATGTTACGTTGTGTAGG
GCAATAGCCAATTTCTCGATGACTTTCTCCATCATATCGGTTCTGACCGG
TCTGAACACAACGTACAGTATGGGCCTCAGATATGGTGGGCCCGTTACCA
TGGTCTACGGGTGGCCCGTAGTGGGCTTTCTCACACTTCTGGTGGGCCTG
TCCATGGCCGAGATTTGCTCTGCTTTTCCAACTTCTGGTGGGCTCTACTT
CTGGAGCGCCAAACTCGCTGGCAAACGATGGGGCGCTTTCGCTTCTTGGC
TCACTGGCTGGTACGTTTTTTATTTTTTCTCTTTTGATTTTTTTTTTTTK
TAAAAATATTTTTATTTGTTTCTGTTAAGTTTTTTTTTTTTTTTTTTTTT
TTTGATGAAGTATTAAATATAGCATTAGCATTTAGAATCAAATTATTTTG
TTATTTAAGCGATTTTCTAATATAATTTTAATCGTGGAAAAAACATTTCA
AATTTAATTAACTCCAAAGAAAAGTAGCATGCTGTTTTAACTAAATTTAA
CTCCTAATAAATTTGAATATTAATGTGTTAATTTTGGTGGATATGGGCCA
AAGATAATTTAGAGCCCAATTTATGAAGTGGGCCTCCACAATTCGTGTGC
TCAAGTATTAAGGAAGTCGTCGGCCCACGACCCATTTAGTGGGACCATCA
CTGTTGTTCGTCCATTGACGGGATATTTTTGAGGAATTTTTAACTTGTTC
ATTGATTGATTAATAGTTTGTTTAATCACTAATCCACTATTACTATTCTA
ATTAGACGGTCACATGGGATACTCGGTCAAATATTCAGATTCAAAACTAC
TAATCATTTGAGATCAGAATCTCTCGTAATTGCATTTTATTGACTTTTAT
ATTCAATAAATTACGCACGGACGAGTGTATGATAATTATTTTCTAGTATC
AATAACCGGAGTGATATTTTCTGTCAACATGAGAAATTTTTTAATGTATC
GAAAATATGGTTCGATATACCGAGTATTGTAATACAAGTAATTAAAAGTT
TTCCTTTATGCGTTCAATCATTTATATTATGATATTTAATGTACTCAACT
TTATTTTCAATATGGTGAAAAATCTCTTGAGTAACATGATTTGCCTGTCC
TATCATTTATTGGGGTTGTCACTTGTGGTATGACACTAGTTTGTCCTCCC
ATATCTGTAATTGCCATGCTATCAATGACCTTTCACAAATAATTTGTCAG
CTCATGAAAATTCAAAACTTTGTTTTATTTGGAAGATTACACACACGACT
TTGTCTGTTAATAAATCGTGTTTAATTCGGTTTCAATTAACAGAAAGTGA
ATGGATGAGATTTTAGAAACGATCATATTTAAATTTGATAATTTAATTAT
GAATAAATTCGTATGTATGGATCAATGCAGATTCATTCCGAACCTTGTTA
CACACGTGTGTTAGATTCGAAATTTGCAACGTATCATATAACAACCCTTT
CCTTAGAGTTACGTGTTGCTTCATCTTTGAAGCCAAAATATACATGATAA
GAAAATTCAGCGTTCACACCAAACAAATAGGAACCCAAAGATTTGGCACC
AATTCCTGAAAATGTTTATGGGATGAACACGCCATTAACAGAAAAATTAA
TTAAAATAATTATATTGTCGTTGGGGAAGTCCAAAGACCCAAAGTCCATG
CCCTGCCACGTTGGGAGCATCATCTTCTCCGCGCGACAAGGTGCATTGCC
TACTGGTACTGGCTGATCTGTTTGGCCTCACCTCTTCTTCCTAAAGCTCC
GTTCTTTGTTTTTCTATTCCCACCCATCCCGTTGACTATTCCCACCCTGC
CAAGAAGTCAAGGAAACAGAATACCAGAAGAGATTTGGGTTTGATTCTTT
GAATCCAAGAACAAATGGTGAGTGGTGGCGGTGACAGAATGGCACTGCCG
TCTCATCAGCCTCCAAACGGTGGCGTTTCACAGGATTCCGGCCACGCCCG
CCTCCACGAACTCGGCTACAAGCAAGAGCTCAAGCGTGACCTCTCGTAAT
TTTTCAAAACTTCCACTCTTTTACTTCGTTTTGAATCCAAAGCTTCAAGC
TTTACTGATTTCTGAGGTTTTTTTGGTTGATGGGTTGGCTGGTTTGGAAT
TGCAGGCTGCTTTCAAATTTTGCGTTTTCGTTTTCCATCATATCGGTGCT
CACCGGAGTGACCACTCTGTATAATACTGGGCTGAGATACGGCGGCCCTG
TGTCTTTCGTTTATGGGTGGTTTATAACGGGTGTCTTCACCGTCTTCGTT
GGGTTGTCAATGGGGGAGATTTGCTCCTCGTACCCAACTTCTGGGGGGCT
GTACTACTGGAGTGCCAAGCTTGCTGGCCCCAAATGGGCACCCTTTGCTT
CTTGGCTCACTGGCTGGTACTACTTTCCTCTCCTTTCAGTTCTTTTACTT
TTACTAACAGTGCTACTCACTCACTTTGGATTTGATTGCTTAGAAAATGA
ATAAAATTTTGGAGTTTTGTCTGTGAGTATGTGTTTAAGTAGTTTTTACT
GGTTTGAAAATCAATCCTTCATTGCTATGATGCTTCATTGCTAGGATTGG
ATCGGATTGGATAAGTTACTAGATCCAGCGTATGTTGAAGACATGTATGT
CAACTTCCAAATTTTGTGAAGGAAACTTGATTTGGCATAGGTTGGTGTGT
AGTTCTTTTTTTGGTTGCTCACAATCGTGGTGGGGATTAAATGTAGGACA
TGCTCAACATGAATAGCTCTGTCTTTAGATAAGGTAAATTAGACATCAGG
ACGGTGATGATGATCAGTTTTAGTAGAATTTATGTGGAATGAAGGAGGGA
ATAGGCTCTGATGCATCCGCTTAAGAGTTTTTTTTTTTTCGCTTGTGATG
TCTCAAAGATACTAGAATGATGATATGATTACCATGTTATTCTGAGCCTA
AAACTGAAATGTATATTGCCCTGCAACTTTAATCACAAGACAGTTCCAAG
TTGGTCTTTCTGCCATACTATTTCTGACGACGGTAAATGTTTTTATGTTT
TGCAGGTTCAACATAGTTGGTCAGGTACTTCCATGAATTTTTACATTCTA
GAGTTTAAATTCCTCCATTGTTCATTGTGATATCAAGCTTGTTATGGCTG
TGATATAATCCATTATAAGCTCTAACTGCATTTATACCTTTAAATTGCAG
TGGGCAGTTACAACTAGCGTGGATTTCTCACTTGCACAGCTGATTAACGT
GATCGTTCTCCTTAGCACACGTGGAGGGAATGGTGGTGATGGCACTTCGA
TAAATAAGTACGGAACCATTGGTATCCATGCAGGAATCTTGTTTCTACAT
GCTCTTATAAACAGTCTGCCCATCTCGTACTTATCTTTGTTTGGACAAGT
CGCTGCTGCGTGGAATGTTGCAGGTGTAAATTACAATGTATTTTCAAGCT
CTTTTTTGCTCGTTTTCAGTTTACTGTTTGAGGCCTTCTATATCTTGTAT
TTCTTATTGCTTTTGGAATATTAGGTGTCTTTCTCCTCATGATTCTCATA
CCCTGTGTTGCAACGGAGAGGGCTAGTGCGAAGTTTGTATTCACTCACTT
CAACACTGATAACGGGGAGGGAATCAGCAACAAATTTCACATTTTTGTTC
TGGGACTTCTGTTGAGTCAATATACCATAACTGGCTATGATGCTTCTGCC
CATATGGTTAGTATATATTTCCCTTACTTTGAAATTACTTGGCCAAATAA
TTCTAACTAAATCCTTGTGTTTCCGTCAACTTCTGTTTCTAGACAGAGGA
AACAAAGAACGCTGATACGAATGGACCAAAAGGAATAATTAGTTCCATCG
TGATATCCATTATCGTTGGATGGGGTTATATACTCGGCATCACCTTTGCA
GTTACTAACATCCCGTACCTTTTGGATGAGAACAATGAAGCTGGCGGTTA
TGCCATTGCTGAAATATTTTACCTTGCATTCAAGAGTAGATACGGCAGTG
GAGTTGGAGGAATTGTATGCTTGGGAGTGGTTGCGGTTGCCATATTCTTC
TGTGGTATGAGTTCAGTTACTAGCAACTCCAGGTAAGCAAGCCTGTTTTA
TTCTTCTCCTACAACAAGAGCCATCTGGGTAGGTTTTAGTCTCTCAGCTG
TTCGCTGCACTTAATTTTCTTCTCAGGATGGTGTATGCATTCTCTAGAGA
TGGAGCCATGCCATTATCACCATTTTGGCATAAAGTGAACAAACACGAAG
TCCCCGTAAACGCTGTTTGGCTTTCTGCTTTCATATCGTTTTGCATGGCA
CTAACAGTAAGCACATGATCACTTGTAGCAAAAATTTTATTTCTGCTTTC
TTCGGCAACTGCTAACCATGTTTGTTTCGATCTTTGCAGTCTCTCGGAAG
CCTTGTGGCATTCAATGCCATGGTTTCTATAGCAACCATTGGACTGTACA
TTGCTTATGCCCTACCCATCTTTTTTAGGGTGACCATGGCACGCAAATCC
TTTGTCCCGGGACCTTTCAACTTGGGACGCTACGGGGTCCTTGTTGGTTG
GATTTCAGTTCTTTGGGTAGCAACTATCTCTGTCCTCTTCTCGTTGCCCG
TGGCCTATCCAATTACCATCGAGACACTCAACTATACTCCCGTTGCTGTT
GGCGGTTTGCTGATCATCACAGTTTTAGCTTGGATCCTGAGCGCTCGGCA
CTGGTTTAAAGGTCCTATAACGAACATAGAAGCATGA

Coding sequence (CDS) from alignment at MDC013096.127:17459..23545-

>MDP0000298577 ID=MDP0000298577; Name=MDP0000298577; organism=Malus x domestica; type=CDS; length=2130bp; location=Sequence derived from: MDC013096.127:17459..23545- (Malus x domestica
ATGGAGGAGGAGGAAGGTCCTTATCAGCCTCTTCAAGGCGGGGACGCCAT
TTCTTCCGACGACACTCGCCTGAACCAGCTCGGTTACAAGCAAGAGCTCA
GTCGTCACCTCTCCCAATTTCTCGATGACTTTCTCCATCATATCGGTTCT
GACCGGTCTGAACACAACGTACAGTATGGGCCTCAGATATGGTGGGCCCG
TTACCATGGTCTACGGGTGGCCCGTAGTGGGCTTTCTCACACTTCTGGTG
GGCCTGTCCATGGCCGAGATTTGCTCTGCTTTTCCAACTTCTGGTGGGCT
CTACTTCTGGAGCGCCAAACTCGCTGGCAAACGATGGGGCGCTTTCGCTT
CTTGGCTCACTGGCTGGAACCCAAAGATTTGGCACCAATTCCTGAAAATG
TTTATGGGATGAACACGCCATTAACAGAAAAATTAATTAAAATAATTATA
TTGTCGTTGGGGAAGTCCAAAGACCCAAAGTCCATGCCCTGCCACGTTGG
GAGCATCATCTTCTCCGCGCGACAAGGTGCATTGCCTACTGAACAAATGG
TGAGTGGTGGCGGTGACAGAATGGCACTGCCGTCTCATCAGCCTCCAAAC
GGTGGCGTTTCACAGGATTCCGGCCACGCCCGCCTCCACGAACTCGGCTA
CAAGCAAGAGCTCAAGCGTGACCTCTCGCTGCTTTCAAATTTTGCGTTTT
CGTTTTCCATCATATCGGTGCTCACCGGAGTGACCACTCTGTATAATACT
GGGCTGAGATACGGCGGCCCTGTGTCTTTCGTTTATGGGTGGTTTATAAC
GGGTGTCTTCACCGTCTTCGTTGGGTTGTCAATGGGGGAGATTTGCTCCT
CGTACCCAACTTCTGGGGGGCTGTACTACTGGAGTGCCAAGCTTGCTGGC
CCCAAATGGGCACCCTTTGCTTCTTGGCTCACTGGCTGGTTCAACATAGT
TGGTCAGTGGGCAGTTACAACTAGCGTGGATTTCTCACTTGCACAGCTGA
TTAACGTGATCGTTCTCCTTAGCACACGTGGAGGGAATGGTGGTGATGGC
ACTTCGATAAATAAGTACGGAACCATTGGTATCCATGCAGGAATCTTGTT
TCTACATGCTCTTATAAACAGTCTGCCCATCTCGTACTTATCTTTGTTTG
GACAAGTCGCTGCTGCGTGGAATGTTGCAGGTGTCTTTCTCCTCATGATT
CTCATACCCTGTGTTGCAACGGAGAGGGCTAGTGCGAAGTTTGTATTCAC
TCACTTCAACACTGATAACGGGGAGGGAATCAGCAACAAATTTCACATTT
TTGTTCTGGGACTTCTGTTGAGTCAATATACCATAACTGGCTATGATGCT
TCTGCCCATATGACAGAGGAAACAAAGAACGCTGATACGAATGGACCAAA
AGGAATAATTAGTTCCATCGTGATATCCATTATCGTTGGATGGGGTTATA
TACTCGGCATCACCTTTGCAGTTACTAACATCCCGTACCTTTTGGATGAG
AACAATGAAGCTGGCGGTTATGCCATTGCTGAAATATTTTACCTTGCATT
CAAGAGTAGATACGGCAGTGGAGTTGGAGGAATTGTATGCTTGGGAGTGG
TTGCGGTTGCCATATTCTTCTGTGGTATGAGTTCAGTTACTAGCAACTCC
AGGATGGTGTATGCATTCTCTAGAGATGGAGCCATGCCATTATCACCATT
TTGGCATAAAGTGAACAAACACGAAGTCCCCGTAAACGCTGTTTGGCTTT
CTGCTTTCATATCGTTTTGCATGGCACTAACATCTCTCGGAAGCCTTGTG
GCATTCAATGCCATGGTTTCTATAGCAACCATTGGACTGTACATTGCTTA
TGCCCTACCCATCTTTTTTAGGGTGACCATGGCACGCAAATCCTTTGTCC
CGGGACCTTTCAACTTGGGACGCTACGGGGTCCTTGTTGGTTGGATTTCA
GTTCTTTGGGTAGCAACTATCTCTGTCCTCTTCTCGTTGCCCGTGGCCTA
TCCAATTACCATCGAGACACTCAACTATACTCCCGTTGCTGTTGGCGGTT
TGCTGATCATCACAGTTTTAGCTTGGATCCTGAGCGCTCGGCACTGGTTT
AAAGGTCCTATAACGAACATAGAAGCATGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002293	AA/rel_permease1
IPR004756	AA_permease
IPR004840	Amoino_acid_permease_CS
IPR004841	AA-permease/SLC12A_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0003333	amino acid transmembrane transport
GO:0006865	amino acid transport
GO:0055085	transmembrane transport
GO:0006810	transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0015171	amino acid transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral to membrane