MDP0000299884, MDP0000299884 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000299884
Unique NameMDP0000299884
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1941
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000299884_exon_1MDP0000299884_exon_1Malus x domesticaCDS
MDP0000299884_exon_2MDP0000299884_exon_2Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000299884MDP0000299884Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 266..557
score: 1.3e
IPR006501Pectinesterase inhibitorGENE3D1.20.140.40no descriptioncoord: 66..216
score: 7.9
IPR006501Pectinesterase inhibitorPFAMPF04043PMEIcoord: 65..214
score: 2.5
IPR006501Pectinesterase inhibitorSMARTSM00856Plant invertase/pectin methylesterase inhibicoord: 63..214
score: 8.9
IPR006501Pectinesterase inhibitorTIGRFAMsTIGR01614PME_inhib: pectinesterase inhibitor domaincoord: 39..218
score: 6.9
IPR006501Pectinesterase inhibitorSUPERFAMILY101148Plant invertase/pectin methylesterase inhibitorcoord: 65..221
score: 2.1
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 259..572
score: 2.1
IPR012334Pectin lyase foldGENE3D2.160.20.10no descriptioncoord: 263..569
score: 2e
IPR018040Pectinesterase, active sitePROSITEPS00503PECTINESTERASE_2coord: 410..419
score
NoneNo IPR availablePANTHERPTHR22931FAMILY NOT NAMEDcoord: 123..508
score: 8.3
NoneNo IPR availablePANTHERPTHR22931:SF5METHYLESTERASE INHIBITOR-RELATEDcoord: 123..508
score: 8.3
NoneNo IPR availableSEGsegsegcoord: 28..47
score: NAcoord: 53..65
score: NAcoord: 83..94
score
NoneNo IPR availableSEGsegsegcoord: 29..43
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000299884 ID=MDP0000299884; Name=MDP0000299884; organism=Malus x domestica; type=mRNA; length=1941bp
ATGTCTTCCTTCAAATCCTATGGAAAGGTTGATGAATCCGAGCAAGCCCG
GCTCGACGCTTGTCGGAAAACTCGAAAAAGAGTAGCCATCATAAGCCTAT
CATCCATRGTTCTTGTCTGTATCGTTGTTGCTGCTGTGGTTGGAACCACC
GTTCATAATAAATCTGGTGGGAATTCTAAGGGCTCGGGCATCTCCACTTC
TGTCAAGGCTGTTTGCGATGTGACCTTGTACCAGGACTCGTGTTACAGCA
GTCTTAGTCCTCTGGTTAACTCCAACAATGTTAAGCCTGAGGAGCTTTTC
AAGTTGGCTGTTCAGGTGGCTATCAATGAATTGACGAAAGCCGCTAGTCA
TTTTTCGGCTGGTGGGGTTCTTAATGCGACTGCCAAGGACAGAAAGTCCG
TGGCAGCTTTGAAAGATTGTCAAGACCTTTTGAGTCTGGCATTGGATCAT
CTCAACGACACATTGTCCGATGCTAACTCGTTGGTTGATGTGTTTGATGA
TCTCACGACTTGGCTGAGCTCTTCAGGCACATATCAGCAGACTTGCATTG
AAGGTTTTGATGAAGTAAAAGGAGAACTCAAGGATAAAGTTATCGGCTAC
TTGAAGAACTCCACTGAGTTAACTAGCAACAGTCTTGCCATAGTCTCTTG
GATTTCCAAAATCCTTAACTCGGTGAAGCTAAGGCGACTGCTGACACACC
CTGACCCCACAGATAGCTACAGCCAGGGTGTGCCAGAGTGGCTGCATCGG
AAGGACCGCAAGCTGCTTCAGAGTTCGGATTTGAGGAAGAAGGCAGACAT
TGTCGTGGCGCGTGATGGCAGTGGCAAGTACAAAACAATTCACGATGCAC
TGAAGGCTGTYCCGAATAAAAGCAAGAAGAGAACAATCATCTACGTGAAG
AAGGGGGTTTATTACGGGAATGTGAGAGTTGAGAAATCCAAGTGGAATGT
TTTGGTGGTCGGTGATGGTTCGACTGCAACTATTGTATCTGCCAAACTCA
ACGTTGTGGATGGAACTCCCACATTTTCCACTGCCACATTCGGTAAACTT
TCATTTGACTTTCWTTTACAGTTCGATAAATMTTTTTGCACAGCTCGCAT
AYTTACTGAACACATTACTGACATGTCTCTTTTAARTATTGAGACCTATG
TCGGGACTCTACTCGTGCAAATGAGTCTCCGCTAGGTGAGAGATATGATC
AGTAATGTTGCCRGTAAATGTTTTATTWCATAATGGTAACAGAAACATTT
TTMTTTGTKTGCAGCYGTTTTTGGAAGGGGATTCATTGCTCGGGACATTG
GATTTCGCAACACTGCCGGACCAGCCAAGCACCAGGCAGTAGCCTTGATG
TCAACCGCCGATCAGTCAGTCTTCTATAGGTGCCACATTGATGCRTTCCA
GGACACTCTCTATGCTCACTCCAATCGCCAGTTCTACCGCGAATGCAACA
TTTATGGAACGGTTGAYTTCATTTTCGGGAACTCAGCAGTTGTGCTCCAG
AACTGCAACATAATGCCCAAAGTTCCCATGCCAGGCCAGCAGAACACCAT
CACAGCTCAAGGGAAAATTGATCCCAATCAAAATACAGGAATTTCAATTC
ACAATTGCAGCATATYGCCCTTCGGAGACTTGTCCMGGGTCAAAACTTAC
CTCGGGAGGCCATGGAAGAATCACTCCACAACTGTGTACATGCAAACATA
CATGGGAAGCCTCATCAACCCTAATGGATGGATGCCATGGGTGGGCACAA
GCGCTCCGGAYACCATATTTTACTCGGAATTTCAAAATTYTGGACCTGGT
TCTTCCACARAGAATAGAGTTAAATGGAARGGKTTGAGATCCATCAACCA
ARAAGYAGCCAGCAAATTTACAGTGCATTCATTTCTCCAAGGAACTAAGT
GGATCTCTGATGCTGGTGTTACCTACAAAKCGAGCCTCTGA
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protein sequence of MDP0000299884

>MDP0000299884 ID=MDP0000299884; Name=MDP0000299884; organism=Malus x domestica; type=polypeptide; length=572bp
MSSFKSYGKVDESEQARLDACRKTRKRVAIISLSSXVLVCIVVAAVVGTT
VHNKSGGNSKGSGISTSVKAVCDVTLYQDSCYSSLSPLVNSNNVKPEELF
KLAVQVAINELTKAASHFSAGGVLNATAKDRKSVAALKDCQDLLSLALDH
LNDTLSDANSLVDVFDDLTTWLSSSGTYQQTCIEGFDEVKGELKDKVIGY
LKNSTELTSNSLAIVSWISKILNSVKLRRLLTHPDPTDSYSQGVPEWLHR
KDRKLLQSSDLRKKADIVVARDGSGKYKTIHDALKAVPNKSKKRTIIYVK
KGVYYGNVRVEKSKWNVLVVGDGSTATIVSAKLNVVDGTPTFSTATFAVF
GRGFIARDIGFRNTAGPAKHQAVALMSTADQSVFYRCHIDAFQDTLYAHS
NRQFYRECNIYGTVDFIFGNSAVVLQNCNIMPKVPMPGQQNTITAQGKID
PNQNTGISIHNCSIXPFGDLSXVKTYLGRPWKNHSTTVYMQTYMGSLINP
NGWMPWVGTSAPDTIFYSEFQNXGPGSSTXNRVKWKGLRSINQXXASKFT
VHSFLQGTKWISDAGVTYKXSL
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mRNA from alignment at chr7:4243312..4245252+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000299884 ID=MDP0000299884; Name=MDP0000299884; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr7:4243312..4245252+ (Malus x domestica
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mRNA from alignment at MDC013690.194:1735..3675+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000299884 ID=MDP0000299884; Name=MDP0000299884; organism=Malus x domestica; type=mRNA; length=1941bp; location=Sequence derived from: MDC013690.194:1735..3675+ (Malus x domestica
ATGTCTTCCTTCAAATCCTATGGAAAGGTTGATGAATCCGAGCAAGCCCG
GCTCGACGCTTGTCGGAAAACTCGAAAAAGAGTAGCCATCATAAGCCTAT
CATCCATRGTTCTTGTCTGTATCGTTGTTGCTGCTGTGGTTGGAACCACC
GTTCATAATAAATCTGGTGGGAATTCTAAGGGCTCGGGCATCTCCACTTC
TGTCAAGGCTGTTTGCGATGTGACCTTGTACCAGGACTCGTGTTACAGCA
GTCTTAGTCCTCTGGTTAACTCCAACAATGTTAAGCCTGAGGAGCTTTTC
AAGTTGGCTGTTCAGGTGGCTATCAATGAATTGACGAAAGCCGCTAGTCA
TTTTTCGGCTGGTGGGGTTCTTAATGCGACTGCCAAGGACAGAAAGTCCG
TGGCAGCTTTGAAAGATTGTCAAGACCTTTTGAGTCTGGCATTGGATCAT
CTCAACGACACATTGTCCGATGCTAACTCGTTGGTTGATGTGTTTGATGA
TCTCACGACTTGGCTGAGCTCTTCAGGCACATATCAGCAGACTTGCATTG
AAGGTTTTGATGAAGTAAAAGGAGAACTCAAGGATAAAGTTATCGGCTAC
TTGAAGAACTCCACTGAGTTAACTAGCAACAGTCTTGCCATAGTCTCTTG
GATTTCCAAAATCCTTAACTCGGTGAAGCTAAGGCGACTGCTGACACACC
CTGACCCCACAGATAGCTACAGCCAGGGTGTGCCAGAGTGGCTGCATCGG
AAGGACCGCAAGCTGCTTCAGAGTTCGGATTTGAGGAAGAAGGCAGACAT
TGTCGTGGCGCGTGATGGCAGTGGCAAGTACAAAACAATTCACGATGCAC
TGAAGGCTGTYCCGAATAAAAGCAAGAAGAGAACAATCATCTACGTGAAG
AAGGGGGTTTATTACGGGAATGTGAGAGTTGAGAAATCCAAGTGGAATGT
TTTGGTGGTCGGTGATGGTTCGACTGCAACTATTGTATCTGCCAAACTCA
ACGTTGTGGATGGAACTCCCACATTTTCCACTGCCACATTCGGTAAACTT
TCATTTGACTTTCWTTTACAGTTCGATAAATMTTTTTGCACAGCTCGCAT
AYTTACTGAACACATTACTGACATGTCTCTTTTAARTATTGAGACCTATG
TCGGGACTCTACTCGTGCAAATGAGTCTCCGCTAGGTGAGAGATATGATC
AGTAATGTTGCCRGTAAATGTTTTATTWCATAATGGTAACAGAAACATTT
TTMTTTGTKTGCAGCYGTTTTTGGAAGGGGATTCATTGCTCGGGACATTG
GATTTCGCAACACTGCCGGACCAGCCAAGCACCAGGCAGTAGCCTTGATG
TCAACCGCCGATCAGTCAGTCTTCTATAGGTGCCACATTGATGCRTTCCA
GGACACTCTCTATGCTCACTCCAATCGCCAGTTCTACCGCGAATGCAACA
TTTATGGAACGGTTGAYTTCATTTTCGGGAACTCAGCAGTTGTGCTCCAG
AACTGCAACATAATGCCCAAAGTTCCCATGCCAGGCCAGCAGAACACCAT
CACAGCTCAAGGGAAAATTGATCCCAATCAAAATACAGGAATTTCAATTC
ACAATTGCAGCATATYGCCCTTCGGAGACTTGTCCMGGGTCAAAACTTAC
CTCGGGAGGCCATGGAAGAATCACTCCACAACTGTGTACATGCAAACATA
CATGGGAAGCCTCATCAACCCTAATGGATGGATGCCATGGGTGGGCACAA
GCGCTCCGGAYACCATATTTTACTCGGAATTTCAAAATTYTGGACCTGGT
TCTTCCACARAGAATAGAGTTAAATGGAARGGKTTGAGATCCATCAACCA
ARAAGYAGCCAGCAAATTTACAGTGCATTCATTTCTCCAAGGAACTAAGT
GGATCTCTGATGCTGGTGTTACCTACAAAKCGAGCCTCTGA
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Coding sequence (CDS) from alignment at MDC013690.194:1735..3675+

>MDP0000299884 ID=MDP0000299884; Name=MDP0000299884; organism=Malus x domestica; type=CDS; length=1719bp; location=Sequence derived from: MDC013690.194:1735..3675+ (Malus x domestica
ATGTCTTCCTTCAAATCCTATGGAAAGGTTGATGAATCCGAGCAAGCCCG
GCTCGACGCTTGTCGGAAAACTCGAAAAAGAGTAGCCATCATAAGCCTAT
CATCCATRGTTCTTGTCTGTATCGTTGTTGCTGCTGTGGTTGGAACCACC
GTTCATAATAAATCTGGTGGGAATTCTAAGGGCTCGGGCATCTCCACTTC
TGTCAAGGCTGTTTGCGATGTGACCTTGTACCAGGACTCGTGTTACAGCA
GTCTTAGTCCTCTGGTTAACTCCAACAATGTTAAGCCTGAGGAGCTTTTC
AAGTTGGCTGTTCAGGTGGCTATCAATGAATTGACGAAAGCCGCTAGTCA
TTTTTCGGCTGGTGGGGTTCTTAATGCGACTGCCAAGGACAGAAAGTCCG
TGGCAGCTTTGAAAGATTGTCAAGACCTTTTGAGTCTGGCATTGGATCAT
CTCAACGACACATTGTCCGATGCTAACTCGTTGGTTGATGTGTTTGATGA
TCTCACGACTTGGCTGAGCTCTTCAGGCACATATCAGCAGACTTGCATTG
AAGGTTTTGATGAAGTAAAAGGAGAACTCAAGGATAAAGTTATCGGCTAC
TTGAAGAACTCCACTGAGTTAACTAGCAACAGTCTTGCCATAGTCTCTTG
GATTTCCAAAATCCTTAACTCGGTGAAGCTAAGGCGACTGCTGACACACC
CTGACCCCACAGATAGCTACAGCCAGGGTGTGCCAGAGTGGCTGCATCGG
AAGGACCGCAAGCTGCTTCAGAGTTCGGATTTGAGGAAGAAGGCAGACAT
TGTCGTGGCGCGTGATGGCAGTGGCAAGTACAAAACAATTCACGATGCAC
TGAAGGCTGTYCCGAATAAAAGCAAGAAGAGAACAATCATCTACGTGAAG
AAGGGGGTTTATTACGGGAATGTGAGAGTTGAGAAATCCAAGTGGAATGT
TTTGGTGGTCGGTGATGGTTCGACTGCAACTATTGTATCTGCCAAACTCA
ACGTTGTGGATGGAACTCCCACATTTTCCACTGCCACATTCGCYGTTTTT
GGAAGGGGATTCATTGCTCGGGACATTGGATTTCGCAACACTGCCGGACC
AGCCAAGCACCAGGCAGTAGCCTTGATGTCAACCGCCGATCAGTCAGTCT
TCTATAGGTGCCACATTGATGCRTTCCAGGACACTCTCTATGCTCACTCC
AATCGCCAGTTCTACCGCGAATGCAACATTTATGGAACGGTTGAYTTCAT
TTTCGGGAACTCAGCAGTTGTGCTCCAGAACTGCAACATAATGCCCAAAG
TTCCCATGCCAGGCCAGCAGAACACCATCACAGCTCAAGGGAAAATTGAT
CCCAATCAAAATACAGGAATTTCAATTCACAATTGCAGCATATYGCCCTT
CGGAGACTTGTCCMGGGTCAAAACTTACCTCGGGAGGCCATGGAAGAATC
ACTCCACAACTGTGTACATGCAAACATACATGGGAAGCCTCATCAACCCT
AATGGATGGATGCCATGGGTGGGCACAAGCGCTCCGGAYACCATATTTTA
CTCGGAATTTCAAAATTYTGGACCTGGTTCTTCCACARAGAATAGAGTTA
AATGGAARGGKTTGAGATCCATCAACCAARAAGYAGCCAGCAAATTTACA
GTGCATTCATTTCTCCAAGGAACTAAGTGGATCTCTGATGCTGGTGTTAC
CTACAAAKCGAGCCTCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000070Pectinesterase_cat
IPR006501Pectinesterase_inhib_dom
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR018040Pectinesterase_Tyr_AS
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
GO:0004857enzyme inhibitor activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification