MDP0000306587, MDP0000306587 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000306587
Unique Name	MDP0000306587
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	2160

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr5	chromosome	chr5:495053..497212 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC016621.372	contig	MDC016621.372:7547..9706 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000306587_exon_1	MDP0000306587_exon_1	Malus x domestica	CDS
MDP0000306587_exon_2	MDP0000306587_exon_2	Malus x domestica	CDS
MDP0000306587_exon_3	MDP0000306587_exon_3	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000306587	MDP0000306587	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain, cyclin-like	PFAM	PF00646	F-box	coord: 123..160 score: 1.9
IPR001810	F-box domain, cyclin-like	SMART	SM00256	A Receptor for Ubiquitination Targets	coord: 124..164 score: 4.3
IPR001810	F-box domain, cyclin-like	PROFILE	PS50181	FBOX	coord: 118..163 score: 11
IPR001810	F-box domain, cyclin-like	SUPERFAMILY	81383	F-box domain	coord: 121..228 score: 1.2
IPR015916	Galactose oxidase, beta-propeller	GENE3D	2.130.10.80	no description	coord: 224..416 score: 2.8
IPR017451	F-box associated interaction domain	TIGRFAMs	TIGR01640	F_box_assoc_1: F-box protein interaction domain	coord: 215..437 score: 3
None	No IPR available	GENE3D	1.20.1280.50	no description	coord: 120..159 score: 9.6
None	No IPR available	PANTHER	PTHR10775	UNCHARACTERIZED	coord: 114..367 score: 5.9
None	No IPR available	PANTHER	PTHR10775:SF7	F-BOX FAMILY PROTEIN	coord: 114..367 score: 5.9
None	No IPR available	SEG	seg	seg	coord: 84..99 score
None	No IPR available	SEG	seg	seg	coord: 45..56 score
None	No IPR available	SEG	seg	seg	coord: 20..28 score
None	No IPR available	SEG	seg	seg	coord: 41..52 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:495053..497212-
mRNA from alignment at MDC016621.372:7547..9706-
coding sequence from alignment at MDC016621.372:7547..9706-

mRNA sequence

>MDP0000306587 ID=MDP0000306587; Name=MDP0000306587; organism=Malus x domestica; type=mRNA; length=2160bp
ATGCCGATCGGAAGGCTCGACTCAGAAATCGTAAATATCCGGCGGTTCTT
ATGCTGGTGGGCAATCACAAAATATTATGTAATTCGTCGAAATCGGATGG
GGAAGAAGCRGTCGAGCCAGGAGAAGGGTAGAGGTGTAAGAATACGGAAG
CAAGTTGCACGCGTTGGCGGGGAAGACTGATTTTGGTTAGGTTAAAAAAG
GGATGGTCTTTACTTTACGAATTTACTCAGACCCGTTTCACTGCATATTT
GTAGGCCCAATATTCTGTTCATAGCAAAAATTGTGAACCATAGCCCATAG
ATATTTTGAGGACATTGGTTCCCATGAGAAAACGAGGAGCTGAAGCTGAT
GGTGAACATGTGGAGTCAAAGAAATTATTTTATTTAGGATAATACTTGCT
TTTTCTCTTGTGATGAGTTCATTCTCCAATTTTGAATAACARAAACTTAA
TCSTTGAATTTATTAGGTTTCATTTGAAGATCATTTCAACAACAAAAAAT
TATTCGAATTCAAAATCGTTCAATTATTTATAGACATTAAATAAATAAAT
AATTTATCCTGAATATGTMATTTGTTATTTATATCGGCGATTTGTTCAAT
TATTTTAATGATTTATACTGAATGAATTTGACTGTCTATTCTCAAGGCAA
TAAAAAAGGGTAAAATTGCTCCACGACCACGCTAACGTTTAATTGGAATA
TTGACAAAAAAATGAACTTTAATGGGAATTTCATCTTTATAATAACATCG
CGTGGCCCCCACTAGCCATTCACGATAAAGTCAGAATCACCCTCGTTCGT
CCATTCAAACAAACCGTAATCCGAAAGGATAAATCTGTAATGATGCGTGC
TCTCGCGAGATTTCCTATAGCACCAACTCCACCCAGACTTTCCACAACAA
CTGCAAGGACCAATGTGAAGGAAACTGAAGGTGAGAAACCCTAGAGCCTG
CCACCAAATTCCAGAGATGAAGACTCCAAAATCCACCGTAGATACCACGC
AGCTTCAAATCCAAGCATCCAAGGCTATGGCGGATCTCCCGCCGGAAGTA
ATCGTCGACATACTMTCTCGTTTACCCGTCTGCCTCCTCCTCCGTTTCCG
GTCGATTGCAAAACCATGGCGGTCGCTCATCGACAGCTCATACTTCGTCG
ATCTCCACCTCACGCAATCGGCAGAGTCCAAATCGCATCTCAGTTTGATT
CTCAGAAAGGACTCCGACCTCTACTGCATCGATTTCGATTCTTTAAACGA
CGCCGTCGAGCTCAATCATCCACTGATGTGTTACAGCAATCGGATTCGCG
TGCTGGGATCCTGCAACGGCCTCCTGTGCATCTGTAACGTGGCTGAAGAT
ATCGCTTTCTGGAACCCGTCGACGAAGAAATACAGAATCTTGCCATCGCT
GCCATCGGATCGAAAGCGCGATTCGAATATGTGTTTATGTGGAGCTAGGG
TTTATGGTCTCGGATATGACGCCGTTCACGATGATTATAAACTGGTGAGG
ATTTCTCAGTTTATTGGATTGGATTACCTGTCGTTTGTGTCTGAGGTGAG
GGTTTTTAGCCTAAGAAACAACGCGTGGAAGCGACTCGAAGACATGCCTT
ATGTGCTCTGTTACACACGAAAAATGGGAATTCTTGTGAGCGGTTGTGTG
CATTGGGTGGTGACTCGGAACCTCGAATTAGATCAACATGCAATGGAGTT
GGTCATTGCATTTGACGTTACGAATGAGACTTGTGGTGAGGTGCCTATGC
CGCAGAACATGGACAGGAAGTGTCAGATTGATGTGGGATACTTGGGAGGG
TGTCTTTGCATTGTAGCTAAATATGAAGATAAGGGTGTTGATGTGTGGAC
ATTGAAGGAGTATGGGGTTAAAGAGTCTTGGAGTAAATTGTTTACCGTAT
CGCAAACTCGAAGAATCAAGAGTGTTAGACCTTTGGTGTATTCGAAGAAT
GGCAGCGAAGTTTTGTTCGAACAAGACCACGAAAATCTCGCTTGGTTTGA
CCTGAAAAGCCAGAGGGTCAAGAGTGTTAAGGTTCGTGGCTTGCCAGATC
TATTTGAGGCTGTAGTTTGTATGGAAAGCCTTGTTTCGGTTCATCCTTGT
AGACGAGAGGATAAGAAAAAGCAGGAAGCAGCAGGGGACTTGAAGAATAA
GAAGAGGTAA

protein sequence of MDP0000306587

>MDP0000306587 ID=MDP0000306587; Name=MDP0000306587; organism=Malus x domestica; type=polypeptide; length=497bp
MPIGRLDSEIVNIRRFLCWWAITKYYVIRRNRMGKKXSSQEKGRAIHDKV
RITLVRPFKQTVIRKDKSVMMRALARFPIAPTPPRLSTTTARTNVKETEE
MKTPKSTVDTTQLQIQASKAMADLPPEVIVDILSRLPVCLLLRFRSIAKP
WRSLIDSSYFVDLHLTQSAESKSHLSLILRKDSDLYCIDFDSLNDAVELN
HPLMCYSNRIRVLGSCNGLLCICNVAEDIAFWNPSTKKYRILPSLPSDRK
RDSNMCLCGARVYGLGYDAVHDDYKLVRISQFIGLDYLSFVSEVRVFSLR
NNAWKRLEDMPYVLCYTRKMGILVSGCVHWVVTRNLELDQHAMELVIAFD
VTNETCGEVPMPQNMDRKCQIDVGYLGGCLCIVAKYEDKGVDVWTLKEYG
VKESWSKLFTVSQTRRIKSVRPLVYSKNGSEVLFEQDHENLAWFDLKSQR
VKSVKVRGLPDLFEAVVCMESLVSVHPCRREDKKKQEAAGDLKNKKR

mRNA from alignment at chr5:495053..497212-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000306587 ID=MDP0000306587; Name=MDP0000306587; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr5:495053..497212- (Malus x domestica

mRNA from alignment at MDC016621.372:7547..9706-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000306587 ID=MDP0000306587; Name=MDP0000306587; organism=Malus x domestica; type=mRNA; length=2160bp; location=Sequence derived from: MDC016621.372:7547..9706- (Malus x domestica
ATGCCGATCGGAAGGCTCGACTCAGAAATCGTAAATATCCGGCGGTTCTT
ATGCTGGTGGGCAATCACAAAATATTATGTAATTCGTCGAAATCGGATGG
GGAAGAAGCRGTCGAGCCAGGAGAAGGGTAGAGGTGTAAGAATACGGAAG
CAAGTTGCACGCGTTGGCGGGGAAGACTGATTTTGGTTAGGTTAAAAAAG
GGATGGTCTTTACTTTACGAATTTACTCAGACCCGTTTCACTGCATATTT
GTAGGCCCAATATTCTGTTCATAGCAAAAATTGTGAACCATAGCCCATAG
ATATTTTGAGGACATTGGTTCCCATGAGAAAACGAGGAGCTGAAGCTGAT
GGTGAACATGTGGAGTCAAAGAAATTATTTTATTTAGGATAATACTTGCT
TTTTCTCTTGTGATGAGTTCATTCTCCAATTTTGAATAACARAAACTTAA
TCSTTGAATTTATTAGGTTTCATTTGAAGATCATTTCAACAACAAAAAAT
TATTCGAATTCAAAATCGTTCAATTATTTATAGACATTAAATAAATAAAT
AATTTATCCTGAATATGTMATTTGTTATTTATATCGGCGATTTGTTCAAT
TATTTTAATGATTTATACTGAATGAATTTGACTGTCTATTCTCAAGGCAA
TAAAAAAGGGTAAAATTGCTCCACGACCACGCTAACGTTTAATTGGAATA
TTGACAAAAAAATGAACTTTAATGGGAATTTCATCTTTATAATAACATCG
CGTGGCCCCCACTAGCCATTCACGATAAAGTCAGAATCACCCTCGTTCGT
CCATTCAAACAAACCGTAATCCGAAAGGATAAATCTGTAATGATGCGTGC
TCTCGCGAGATTTCCTATAGCACCAACTCCACCCAGACTTTCCACAACAA
CTGCAAGGACCAATGTGAAGGAAACTGAAGGTGAGAAACCCTAGAGCCTG
CCACCAAATTCCAGAGATGAAGACTCCAAAATCCACCGTAGATACCACGC
AGCTTCAAATCCAAGCATCCAAGGCTATGGCGGATCTCCCGCCGGAAGTA
ATCGTCGACATACTMTCTCGTTTACCCGTCTGCCTCCTCCTCCGTTTCCG
GTCGATTGCAAAACCATGGCGGTCGCTCATCGACAGCTCATACTTCGTCG
ATCTCCACCTCACGCAATCGGCAGAGTCCAAATCGCATCTCAGTTTGATT
CTCAGAAAGGACTCCGACCTCTACTGCATCGATTTCGATTCTTTAAACGA
CGCCGTCGAGCTCAATCATCCACTGATGTGTTACAGCAATCGGATTCGCG
TGCTGGGATCCTGCAACGGCCTCCTGTGCATCTGTAACGTGGCTGAAGAT
ATCGCTTTCTGGAACCCGTCGACGAAGAAATACAGAATCTTGCCATCGCT
GCCATCGGATCGAAAGCGCGATTCGAATATGTGTTTATGTGGAGCTAGGG
TTTATGGTCTCGGATATGACGCCGTTCACGATGATTATAAACTGGTGAGG
ATTTCTCAGTTTATTGGATTGGATTACCTGTCGTTTGTGTCTGAGGTGAG
GGTTTTTAGCCTAAGAAACAACGCGTGGAAGCGACTCGAAGACATGCCTT
ATGTGCTCTGTTACACACGAAAAATGGGAATTCTTGTGAGCGGTTGTGTG
CATTGGGTGGTGACTCGGAACCTCGAATTAGATCAACATGCAATGGAGTT
GGTCATTGCATTTGACGTTACGAATGAGACTTGTGGTGAGGTGCCTATGC
CGCAGAACATGGACAGGAAGTGTCAGATTGATGTGGGATACTTGGGAGGG
TGTCTTTGCATTGTAGCTAAATATGAAGATAAGGGTGTTGATGTGTGGAC
ATTGAAGGAGTATGGGGTTAAAGAGTCTTGGAGTAAATTGTTTACCGTAT
CGCAAACTCGAAGAATCAAGAGTGTTAGACCTTTGGTGTATTCGAAGAAT
GGCAGCGAAGTTTTGTTCGAACAAGACCACGAAAATCTCGCTTGGTTTGA
CCTGAAAAGCCAGAGGGTCAAGAGTGTTAAGGTTCGTGGCTTGCCAGATC
TATTTGAGGCTGTAGTTTGTATGGAAAGCCTTGTTTCGGTTCATCCTTGT
AGACGAGAGGATAAGAAAAAGCAGGAAGCAGCAGGGGACTTGAAGAATAA
GAAGAGGTAA

Coding sequence (CDS) from alignment at MDC016621.372:7547..9706-

>MDP0000306587 ID=MDP0000306587; Name=MDP0000306587; organism=Malus x domestica; type=CDS; length=1494bp; location=Sequence derived from: MDC016621.372:7547..9706- (Malus x domestica
ATGCCGATCGGAAGGCTCGACTCAGAAATCGTAAATATCCGGCGGTTCTT
ATGCTGGTGGGCAATCACAAAATATTATGTAATTCGTCGAAATCGGATGG
GGAAGAAGCRGTCGAGCCAGGAGAAGGGTAGAGCCATTCACGATAAAGTC
AGAATCACCCTCGTTCGTCCATTCAAACAAACCGTAATCCGAAAGGATAA
ATCTGTAATGATGCGTGCTCTCGCGAGATTTCCTATAGCACCAACTCCAC
CCAGACTTTCCACAACAACTGCAAGGACCAATGTGAAGGAAACTGAAGAG
ATGAAGACTCCAAAATCCACCGTAGATACCACGCAGCTTCAAATCCAAGC
ATCCAAGGCTATGGCGGATCTCCCGCCGGAAGTAATCGTCGACATACTMT
CTCGTTTACCCGTCTGCCTCCTCCTCCGTTTCCGGTCGATTGCAAAACCA
TGGCGGTCGCTCATCGACAGCTCATACTTCGTCGATCTCCACCTCACGCA
ATCGGCAGAGTCCAAATCGCATCTCAGTTTGATTCTCAGAAAGGACTCCG
ACCTCTACTGCATCGATTTCGATTCTTTAAACGACGCCGTCGAGCTCAAT
CATCCACTGATGTGTTACAGCAATCGGATTCGCGTGCTGGGATCCTGCAA
CGGCCTCCTGTGCATCTGTAACGTGGCTGAAGATATCGCTTTCTGGAACC
CGTCGACGAAGAAATACAGAATCTTGCCATCGCTGCCATCGGATCGAAAG
CGCGATTCGAATATGTGTTTATGTGGAGCTAGGGTTTATGGTCTCGGATA
TGACGCCGTTCACGATGATTATAAACTGGTGAGGATTTCTCAGTTTATTG
GATTGGATTACCTGTCGTTTGTGTCTGAGGTGAGGGTTTTTAGCCTAAGA
AACAACGCGTGGAAGCGACTCGAAGACATGCCTTATGTGCTCTGTTACAC
ACGAAAAATGGGAATTCTTGTGAGCGGTTGTGTGCATTGGGTGGTGACTC
GGAACCTCGAATTAGATCAACATGCAATGGAGTTGGTCATTGCATTTGAC
GTTACGAATGAGACTTGTGGTGAGGTGCCTATGCCGCAGAACATGGACAG
GAAGTGTCAGATTGATGTGGGATACTTGGGAGGGTGTCTTTGCATTGTAG
CTAAATATGAAGATAAGGGTGTTGATGTGTGGACATTGAAGGAGTATGGG
GTTAAAGAGTCTTGGAGTAAATTGTTTACCGTATCGCAAACTCGAAGAAT
CAAGAGTGTTAGACCTTTGGTGTATTCGAAGAATGGCAGCGAAGTTTTGT
TCGAACAAGACCACGAAAATCTCGCTTGGTTTGACCTGAAAAGCCAGAGG
GTCAAGAGTGTTAAGGTTCGTGGCTTGCCAGATCTATTTGAGGCTGTAGT
TTGTATGGAAAGCCTTGTTTCGGTTCATCCTTGTAGACGAGAGGATAAGA
AAAAGCAGGAAGCAGCAGGGGACTTGAAGAATAAGAAGAGGTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR015916	Gal_Oxidase_b-propeller
IPR017451	F-box-assoc_interact_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding