MDP0000307492, MDP0000307492 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000307492
Unique Name	MDP0000307492
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	3394

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr17	chromosome	chr17:20735832..20739225 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC015963.393	contig	MDC015963.393:4649..8042 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000307492_exon_1	MDP0000307492_exon_1	Malus x domestica	CDS
MDP0000307492_exon_2	MDP0000307492_exon_2	Malus x domestica	CDS
MDP0000307492_exon_3	MDP0000307492_exon_3	Malus x domestica	CDS
MDP0000307492_exon_4	MDP0000307492_exon_4	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000307492	MDP0000307492	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 16..113 score: 1
None	No IPR available	SEG	seg	seg	coord: 151..159 score: NAcoord: 160..180 score
None	No IPR available	SEG	seg	seg	coord: 2..13 score
None	No IPR available	SEG	seg	seg	coord: 15..32 score
None	No IPR available	SEG	seg	seg	coord: 111..122 score
None	No IPR available	SEG	seg	seg	coord: 74..82 score: NAcoord: 112..130 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr17:20735832..20739225+
mRNA from alignment at MDC015963.393:4649..8042+
coding sequence from alignment at MDC015963.393:4649..8042+

mRNA sequence

>MDP0000307492 ID=MDP0000307492; Name=MDP0000307492; organism=Malus x domestica; type=mRNA; length=3394bp
ATGGAAAGTGAACAAAGTAGTCAACCAAAAGGAAGTAGAAGGGTTTGGAA
ACAATATGAAGAAGATGCATTGTTGTCCATACTTGAGGATGCAATTGTTA
AGAATTTGCGATGTGATAACGGTTGTTTCAAACCYGGAACAATGGCTCAA
TTTGAAACTGCWATTAATTTGAAATGTCCTAATGCCAATATAAAGGCAGT
TCCACATATTKAGTCCAAAATGAGGAGGTGGAAAAAAGATTATGCAATAG
TTTATGACATGGTTAATAAAAYTGGTTTTGCATGGAATGATGTACGAAAR
TGTATTGAGGTTGATAGCAATGAAGTATGGYAGTCWTATGTGAAGGTAAT
TCTRTAACWTAAWACTAGAATTTAACTTTACATATTTGATTACTTAACAT
GTTCCTTTACATACAATTTAATAGTATGATTGTGTCTACCAAACCATATC
MTCTAGCCCCATTCTGGAACAAAATAAGATTATTTGTATTTTATGGATAR
TGTGATTTGTTTTYGCATTGCAGGTTAAYAAAGAAGYASAGGGCTGGCTA
GGAAAATCGTTTCCATTGTATGACAGATTGAATGTTATTTTTGGGAAAGA
CCGAGCAAYTGGAGTAGGAGCWGCAACTCCTACTSWGATGATGAATGAGC
CWGAGCACATTAATGAAGATGAAGATGAAGATGAGGTGGAGACTAGTTCT
CMTTYTGTTGCTYGACGGTCAAGCAGTTCAAGTACYCGGAAAAGGAAGAG
AGCTGCTAMTGATAATGATCTTGCTGTGGCATTTAAAGAAATGCTTTCTG
AATCAGTGGATAAGTTGGGTRAAGTTTTACAAGCTGYTTTTRGGAAAGGA
GTGGATCCAAAACYTGAGATTGCTTCARAATTGTCAAAGATGGATTTGTC
TATTGAGGATCAAATCAAGGCACTMAATATTCTYTTCGAAAAGCCACARA
ATGAGAGGACATTCTTGTCTTTGGATKGTGCAATGMAAAAAGCTTTCGTA
CTCATGTTACTTGGACAAAGTAACCRCAATTGACATTTCAAACCAACAAT
ATATTTTGTTAAAAGCARCATGCATATCTTTTGTTAAGAGCTGCAGCATG
CATATATTTTGTTAAAAGCAGCATGCATATGTTTTGGCTATTTGGACAAA
ATGTTTCTTAGTGAAATCAACTTGCATTTGTATATTTTATGAACTTGGAT
ATGTGGTTGGATTAATCTATATAACGTAATGACTTGTAGTTGTTTTTTGT
GAACCTTCTTTTATGTTATTGGAAAATATTTTGAATTTGATGTATGGAAT
TTACTATGTTTCTTTGTTATTTGAAAATTTGTGTGGTTTTCAATAGGTAT
AAATATGAGAAAAGTTCAACAAACAAAAAAAGATTTGTTTTTTTTTTCTC
TTGTCCTCTCCGGTTCAGTACCAAACACAGTATAAATAATACGGTCATTA
ATCCGAAACTGCACCAAACGCCCGACTAATTTAGTCAGTACTATCCGGTG
GCTATTTATCCTATCCGACAGAAATAGTCAGTACAGTCCGAGCTGCCAAA
CGAGGCCTTAGGGTTTTATCATATAAAAGCCTATTTTTTATCTCGTTAAA
TAAAAGTATACAAATAAAAACCAATTTTTATCTAAAACTCTGAATTACAA
ACAATGCATTCTGTCAAAAAAAAAATAGTTGAATAAAATTATCCAAATAA
AAGCCTTTTTTTTTAGGAAAACTAATGAAAAAGATTTTAAAATTTTGAGT
TTTAACGATAAGAACAAAATAAAAGGTAAAGTAAATAGTAAATAGTATCA
AGATTGACTTTTGAGTTTTAACGATAAGAGCAACTTTTCTTGAGCTTCAA
TTCTAATCTGAAACTTTCTTTTGAACCTATTTTAAAAAGTAGCAACAACA
ATTAGAAGATGGGCCACATGTAATGATTCATAGTCCAATTTACTTTAGTC
CAAGATTGACCTAATTTTATGCATCGACAAATTTTAATCAAATAAAATGT
AAAAAAAAAAAACAGACGATAGCAAGTAAGTTTTCGGGGTGATCCGGAAG
ACATGGATGTCAACAAAATATCCAAAGTACCACTAGAGGAGGGCTATGTA
TACGAAATGCATAAATAGGAATGCAAATATCCAAAGCACCACTAGAGGAG
GGCTATGTATACAAAATGCATAAATAGGAATGCAAAGACGAGACGCTAAT
ATCAAAATGTCCCTTTTAATAAAGAAAAAATCCAAAGACAAGGTGCCTAT
ATCAAAACTCCCCATTTTAATAGTAGCTAAGTACTGGTAAACCAAGCTGT
AATCAAACCGGAGCTGATAAGTACTGGTTTCATATACCCTTGTTGTGAAA
AGATTCTCATAAACAACACGTAACTGATTGAGCACTTAAATGTGTCTTCG
TGTACATACGGCATGATCAATTTATGAATTTCACACGTAGGAAAACTAAA
AGAGTTCATTTTCCACATTGTTTCTTTCAGTTATCGGGCATTGTCCCCAC
ATTAGTTAATGCCCTGCATTGAGATCAGCAATTCAATCAAATCTGGCGTC
AGTCCAGTGACTTCAGCTAATTGAACAACTCAGTTGTTGAAAACATCGCA
ATTTTATGTAATTCTCTTTGAAACAATGGATTTGGGTACATGTGAAAACT
CTAGGATCAGGACTCAGTCCAAAACAACATATGAGATAACAACCCTACGA
CTCTTCTATATGAATTAAACACTTGGAACTAGTGAAAAATGCATTGTTTT
GCCGAAAGAAAAATAAAAATAAAAACTCGATCCTTATAGGAAGCCATCAG
TGTGAACACATAATGTGAATATAGAAACATGGTGTGGGCTTATCCTTGAA
TATAAATAGGGTAGCACGTTCGAAGCTATGGAGCAAGTAAATCACACGAG
AAAACGAGAAAGAGAGAAGAGGGAAGGGAGAAAAAAAAAAGAGACAAGTG
AGCGTGATCATCCCCATTTAACATGGCAGCACCACTACCAAACCCTTTTG
CGTGGCAATCTAACCACAACAGCAAGTACTTGCACTTAGATGGAGAAATC
GGAGGTCAAAGGGGGATTCTCGAATTCACCGAAGAGGATCCTAAATATGT
TTTCAAACGGGATACGTGAAAATCAAGTGCTCTGAAAACAAATTATACTT
GAAAGGAGTGTGGAATCAAACTTATGAAACATGGTTGATCGTGGCCGCTG
CTGAGAAGGATGATGAAGATTCCACATCCTTCGAGCATAAGCCAGGCAAT
TCAAGCTTCCGAATGCGCCATGTGAAGAGCAACCTCTATTTAAGGCCATA
CAAGATAGGTCATTCGGACGCAGTCCTCTGCGCAGTCAAGCCAGCTCCTG
ACGCTGGAAATGAGGATCTCTTTACAGCCTATAGGCATCCATGA

protein sequence of MDP0000307492

>MDP0000307492 ID=MDP0000307492; Name=MDP0000307492; organism=Malus x domestica; type=polypeptide; length=347bp
MESEQSSQPKGSRRVWKQYEEDALLSILEDAIVKNLRCDNGCFKPGTMAQ
FETAINLKCPNANIKAVPHIXSKMRRWKKDYAIVYDMVNKXGFAWNDVRK
CIEVDSNEVWXSYVKVNKEXXGWLGKSFPLYDRLNVIFGKDRAXGPEHIN
EDEDEDEVETSSXXVAXRSSSSSTRKRKRAAXDNDLAVAFKEMLSESVDK
LGXVLQAXFXKGVDPKXEIASXLSKMDLSIEDQIKALNILFEKPQNERTF
LSLDXAMXKAFVLMLLGQRVWNQTYETWLIVAAAEKDDEDSTSFEHKPGN
SSFRMRHVKSNLYLRPYKIGHSDAVLCAVKPAPDAGNEDLFTAYRHP

mRNA from alignment at chr17:20735832..20739225+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000307492 ID=MDP0000307492; Name=MDP0000307492; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr17:20735832..20739225+ (Malus x domestica

mRNA from alignment at MDC015963.393:4649..8042+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000307492 ID=MDP0000307492; Name=MDP0000307492; organism=Malus x domestica; type=mRNA; length=3394bp; location=Sequence derived from: MDC015963.393:4649..8042+ (Malus x domestica
ATGGAAAGTGAACAAAGTAGTCAACCAAAAGGAAGTAGAAGGGTTTGGAA
ACAATATGAAGAAGATGCATTGTTGTCCATACTTGAGGATGCAATTGTTA
AGAATTTGCGATGTGATAACGGTTGTTTCAAACCYGGAACAATGGCTCAA
TTTGAAACTGCWATTAATTTGAAATGTCCTAATGCCAATATAAAGGCAGT
TCCACATATTKAGTCCAAAATGAGGAGGTGGAAAAAAGATTATGCAATAG
TTTATGACATGGTTAATAAAAYTGGTTTTGCATGGAATGATGTACGAAAR
TGTATTGAGGTTGATAGCAATGAAGTATGGYAGTCWTATGTGAAGGTAAT
TCTRTAACWTAAWACTAGAATTTAACTTTACATATTTGATTACTTAACAT
GTTCCTTTACATACAATTTAATAGTATGATTGTGTCTACCAAACCATATC
MTCTAGCCCCATTCTGGAACAAAATAAGATTATTTGTATTTTATGGATAR
TGTGATTTGTTTTYGCATTGCAGGTTAAYAAAGAAGYASAGGGCTGGCTA
GGAAAATCGTTTCCATTGTATGACAGATTGAATGTTATTTTTGGGAAAGA
CCGAGCAAYTGGAGTAGGAGCWGCAACTCCTACTSWGATGATGAATGAGC
CWGAGCACATTAATGAAGATGAAGATGAAGATGAGGTGGAGACTAGTTCT
CMTTYTGTTGCTYGACGGTCAAGCAGTTCAAGTACYCGGAAAAGGAAGAG
AGCTGCTAMTGATAATGATCTTGCTGTGGCATTTAAAGAAATGCTTTCTG
AATCAGTGGATAAGTTGGGTRAAGTTTTACAAGCTGYTTTTRGGAAAGGA
GTGGATCCAAAACYTGAGATTGCTTCARAATTGTCAAAGATGGATTTGTC
TATTGAGGATCAAATCAAGGCACTMAATATTCTYTTCGAAAAGCCACARA
ATGAGAGGACATTCTTGTCTTTGGATKGTGCAATGMAAAAAGCTTTCGTA
CTCATGTTACTTGGACAAAGTAACCRCAATTGACATTTCAAACCAACAAT
ATATTTTGTTAAAAGCARCATGCATATCTTTTGTTAAGAGCTGCAGCATG
CATATATTTTGTTAAAAGCAGCATGCATATGTTTTGGCTATTTGGACAAA
ATGTTTCTTAGTGAAATCAACTTGCATTTGTATATTTTATGAACTTGGAT
ATGTGGTTGGATTAATCTATATAACGTAATGACTTGTAGTTGTTTTTTGT
GAACCTTCTTTTATGTTATTGGAAAATATTTTGAATTTGATGTATGGAAT
TTACTATGTTTCTTTGTTATTTGAAAATTTGTGTGGTTTTCAATAGGTAT
AAATATGAGAAAAGTTCAACAAACAAAAAAAGATTTGTTTTTTTTTTCTC
TTGTCCTCTCCGGTTCAGTACCAAACACAGTATAAATAATACGGTCATTA
ATCCGAAACTGCACCAAACGCCCGACTAATTTAGTCAGTACTATCCGGTG
GCTATTTATCCTATCCGACAGAAATAGTCAGTACAGTCCGAGCTGCCAAA
CGAGGCCTTAGGGTTTTATCATATAAAAGCCTATTTTTTATCTCGTTAAA
TAAAAGTATACAAATAAAAACCAATTTTTATCTAAAACTCTGAATTACAA
ACAATGCATTCTGTCAAAAAAAAAATAGTTGAATAAAATTATCCAAATAA
AAGCCTTTTTTTTTAGGAAAACTAATGAAAAAGATTTTAAAATTTTGAGT
TTTAACGATAAGAACAAAATAAAAGGTAAAGTAAATAGTAAATAGTATCA
AGATTGACTTTTGAGTTTTAACGATAAGAGCAACTTTTCTTGAGCTTCAA
TTCTAATCTGAAACTTTCTTTTGAACCTATTTTAAAAAGTAGCAACAACA
ATTAGAAGATGGGCCACATGTAATGATTCATAGTCCAATTTACTTTAGTC
CAAGATTGACCTAATTTTATGCATCGACAAATTTTAATCAAATAAAATGT
AAAAAAAAAAAACAGACGATAGCAAGTAAGTTTTCGGGGTGATCCGGAAG
ACATGGATGTCAACAAAATATCCAAAGTACCACTAGAGGAGGGCTATGTA
TACGAAATGCATAAATAGGAATGCAAATATCCAAAGCACCACTAGAGGAG
GGCTATGTATACAAAATGCATAAATAGGAATGCAAAGACGAGACGCTAAT
ATCAAAATGTCCCTTTTAATAAAGAAAAAATCCAAAGACAAGGTGCCTAT
ATCAAAACTCCCCATTTTAATAGTAGCTAAGTACTGGTAAACCAAGCTGT
AATCAAACCGGAGCTGATAAGTACTGGTTTCATATACCCTTGTTGTGAAA
AGATTCTCATAAACAACACGTAACTGATTGAGCACTTAAATGTGTCTTCG
TGTACATACGGCATGATCAATTTATGAATTTCACACGTAGGAAAACTAAA
AGAGTTCATTTTCCACATTGTTTCTTTCAGTTATCGGGCATTGTCCCCAC
ATTAGTTAATGCCCTGCATTGAGATCAGCAATTCAATCAAATCTGGCGTC
AGTCCAGTGACTTCAGCTAATTGAACAACTCAGTTGTTGAAAACATCGCA
ATTTTATGTAATTCTCTTTGAAACAATGGATTTGGGTACATGTGAAAACT
CTAGGATCAGGACTCAGTCCAAAACAACATATGAGATAACAACCCTACGA
CTCTTCTATATGAATTAAACACTTGGAACTAGTGAAAAATGCATTGTTTT
GCCGAAAGAAAAATAAAAATAAAAACTCGATCCTTATAGGAAGCCATCAG
TGTGAACACATAATGTGAATATAGAAACATGGTGTGGGCTTATCCTTGAA
TATAAATAGGGTAGCACGTTCGAAGCTATGGAGCAAGTAAATCACACGAG
AAAACGAGAAAGAGAGAAGAGGGAAGGGAGAAAAAAAAAAGAGACAAGTG
AGCGTGATCATCCCCATTTAACATGGCAGCACCACTACCAAACCCTTTTG
CGTGGCAATCTAACCACAACAGCAAGTACTTGCACTTAGATGGAGAAATC
GGAGGTCAAAGGGGGATTCTCGAATTCACCGAAGAGGATCCTAAATATGT
TTTCAAACGGGATACGTGAAAATCAAGTGCTCTGAAAACAAATTATACTT
GAAAGGAGTGTGGAATCAAACTTATGAAACATGGTTGATCGTGGCCGCTG
CTGAGAAGGATGATGAAGATTCCACATCCTTCGAGCATAAGCCAGGCAAT
TCAAGCTTCCGAATGCGCCATGTGAAGAGCAACCTCTATTTAAGGCCATA
CAAGATAGGTCATTCGGACGCAGTCCTCTGCGCAGTCAAGCCAGCTCCTG
ACGCTGGAAATGAGGATCTCTTTACAGCCTATAGGCATCCATGA

Coding sequence (CDS) from alignment at MDC015963.393:4649..8042+

>MDP0000307492 ID=MDP0000307492; Name=MDP0000307492; organism=Malus x domestica; type=CDS; length=1044bp; location=Sequence derived from: MDC015963.393:4649..8042+ (Malus x domestica
ATGGAAAGTGAACAAAGTAGTCAACCAAAAGGAAGTAGAAGGGTTTGGAA
ACAATATGAAGAAGATGCATTGTTGTCCATACTTGAGGATGCAATTGTTA
AGAATTTGCGATGTGATAACGGTTGTTTCAAACCYGGAACAATGGCTCAA
TTTGAAACTGCWATTAATTTGAAATGTCCTAATGCCAATATAAAGGCAGT
TCCACATATTKAGTCCAAAATGAGGAGGTGGAAAAAAGATTATGCAATAG
TTTATGACATGGTTAATAAAAYTGGTTTTGCATGGAATGATGTACGAAAR
TGTATTGAGGTTGATAGCAATGAAGTATGGYAGTCWTATGTGAAGGTTAA
YAAAGAAGYASAGGGCTGGCTAGGAAAATCGTTTCCATTGTATGACAGAT
TGAATGTTATTTTTGGGAAAGACCGAGCAAYTGGACCWGAGCACATTAAT
GAAGATGAAGATGAAGATGAGGTGGAGACTAGTTCTCMTTYTGTTGCTYG
ACGGTCAAGCAGTTCAAGTACYCGGAAAAGGAAGAGAGCTGCTAMTGATA
ATGATCTTGCTGTGGCATTTAAAGAAATGCTTTCTGAATCAGTGGATAAG
TTGGGTRAAGTTTTACAAGCTGYTTTTRGGAAAGGAGTGGATCCAAAACY
TGAGATTGCTTCARAATTGTCAAAGATGGATTTGTCTATTGAGGATCAAA
TCAAGGCACTMAATATTCTYTTCGAAAAGCCACARAATGAGAGGACATTC
TTGTCTTTGGATKGTGCAATGMAAAAAGCTTTCGTACTCATGTTACTTGG
ACAAAGAGTGTGGAATCAAACTTATGAAACATGGTTGATCGTGGCCGCTG
CTGAGAAGGATGATGAAGATTCCACATCCTTCGAGCATAAGCCAGGCAAT
TCAAGCTTCCGAATGCGCCATGTGAAGAGCAACCTCTATTTAAGGCCATA
CAAGATAGGTCATTCGGACGCAGTCCTCTGCGCAGTCAAGCCAGCTCCTG
ACGCTGGAAATGAGGATCTCTTTACAGCCTATAGGCATCCATGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR024752	Myb/SANT-like_dom