MDP0000319973, MDP0000319973 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000319973
Unique Name	MDP0000319973
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	5044

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr13	chromosome	chr13:3804040..3809083 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC003581.256	contig	MDC003581.256:4544..9587 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000319973_exon_1	MDP0000319973_exon_1	Malus x domestica	CDS
MDP0000319973_exon_2	MDP0000319973_exon_2	Malus x domestica	CDS
MDP0000319973_exon_3	MDP0000319973_exon_3	Malus x domestica	CDS
MDP0000319973_exon_4	MDP0000319973_exon_4	Malus x domestica	CDS
MDP0000319973_exon_5	MDP0000319973_exon_5	Malus x domestica	CDS
MDP0000319973_exon_6	MDP0000319973_exon_6	Malus x domestica	CDS

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 11..80 score: 4.6
IPR000504	RNA recognition motif domain	SMART	SM00360	RNA recognition motif	coord: 10..83 score: 1.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 9..87 score: 18
IPR011611	Carbohydrate/purine kinase	PFAM	PF00294	PfkB	coord: 366..640 score: 3.2
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 7..89 score: 3.3
None	No IPR available	COIL	coil	coiled-coil	coord: 124..171 score
None	No IPR available	GENE3D	3.40.1190.20	no description	coord: 334..684 score: 4.7
None	No IPR available	PANTHER	PTHR10584	SUGAR KINASE	coord: 323..702 score: 1.5e
None	No IPR available	PANTHER	PTHR10584:SF34	FRUCTOKINASE	coord: 323..702 score: 1.5e
None	No IPR available	SEG	seg	seg	coord: 62..73 score: NAcoord: 123..137 score: NAcoord: 156..166 score: NAcoord: 181..197 score: NAcoord: 209..232 score: NAcoord: 269..286 score: NAcoord: 309..325 score
None	No IPR available	SUPERFAMILY	53613	Ribokinase-like	coord: 334..685 score: 1.1
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 2..106 score: 1.2
None	No IPR available	SEG	seg	seg	coord: 34..60 score
None	No IPR available	SEG	seg	seg	coord: 11..41 score
None	No IPR available	SEG	seg	seg	coord: 18..41 score
None	No IPR available	SEG	seg	seg	coord: 12..21 score: NAcoord: 54..76 score
None	No IPR available	SEG	seg	seg	coord: 31..47 score
None	No IPR available	SEG	seg	seg	coord: 14..30 score
None	No IPR available	SEG	seg	seg	coord: 58..81 score
None	No IPR available	SEG	seg	seg	coord: 32..49 score: NAcoord: 61..77 score: NAcoord: 122..139 score
None	No IPR available	SEG	seg	seg	coord: 14..27 score
None	No IPR available	SEG	seg	seg	coord: 2..42 score: NAcoord: 45..66 score: NAcoord: 114..124 score

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at chr13:3804040..3809083+
mRNA from alignment at MDC003581.256:4544..9587+
coding sequence from alignment at MDC003581.256:4544..9587+

mRNA sequence

>MDP0000319973 ID=MDP0000319973; Name=MDP0000319973; organism=Malus x domestica; type=mRNA; length=5044bp
ATGGCGCAGCAAGCAGTGCAGAAGAACACGCTGTACGTCGGAGGACTGGC
GGAGGAGGTGAACGAGTCCATACTCCACGCGGCGTTCATACCCTTCGGGG
ACATCAAGGACGTCAAGACGCCTCTCGATCAAGCCACCCAGAAGCACCGC
TCTTTTGGGTTCGTCACGTTCTTGGAGAGAGAGGACGCCGCCGCCGCCAT
GGACAACATGGACGGCGCCGAGCTCTACGGCCGCGTCCTCACTGTTAATT
ATGCCCTCCCTGAGAAAATCAAGGGCGGTGAACAGGGTTGGGCCGCTCAG
CCCAGTAAGTCCTTGTTCCCTTTTACTCCTACTCCTCAATCCTCCTTCCA
TTGTTATTACTTYTGTGTGGATTTGAATGTTAGCTTGATTTGTTTAGATG
GGTTTGGTTGATTTATTAATTATTTGGGTTATCTGGGATGTTTCGATTTT
TGGGTTTTGTTGTGAAATTTGGTTCTAGGGTTCGTGATTGATGCTCTTTG
GGGTYMACTTCTTGTTGTTATTAAGTGTGTATGTTAGTGTAGCTGTTTCG
ACTTTGGGGGTTTAGGGTTTTAGGATTCAATCTGGGTATGCAGTCAATTT
TACTTTAGATTTAGATTCATGATTAGGATTCAGGAAGATACTGAGCTCTG
GTATTTAGATGCTTTTTTGRTGATCCGYCTCGTTTCACCCAAGTTCGAAT
ACTCAGCCTCGTAGATTAGATTCATGGAACTTTAACGAAAAGCTTCCGTT
ACTGTTTATTTTGACGAAAAAYCATATTTTTACACTAAAAAGACAACTTT
ACYYTTTATTTTGTCCTTATCGTTAAAACTCAAAAGTTTCAAACTCTTTT
CATTAGTTTTCTTTAGATTCATTAGAATGTATACATTGTTTTGTGAAAAA
GAAAAGGGGTTGAAAGAAAATAGAACGATGACATCGAATTAGAAACAGTT
GAATAGCATTTTGAAGTTAATGATCGTCGTTGAACTAAAATTACCTGCTC
TTGTGTTCAACTCAAATTGCTTAAATTGTTTGTCCGTTGAGATTAATGTT
CATTCCGAATCAAGCTTRAAATTTTAGGTATGCTTAGCATCTTTCGTTGC
TTTGTTAYTACAGTTTGGGCAGATGCAGACACGTGGTTTGAGAGACAGCA
ACAAGAAGAGGAAATGCAGCGTATTCAGGCAGAGAACAAGGCTGCCATGC
AGGCCGCGGAAGAGTTGCACAGGAAAAAATTGACGCAAGAACGAGAAGGG
GAAAAAGAAGAGGAGATCGAGATGAAGGACGACCCCATGGCAAGGGCTGA
GGCAGAGGTTTTGCAACAGAGTGACTAGTGTTCCACTGCTTCCAAGTGAA
CAKTATGTGAGGAGTATGCAGTTTTGTTCTGTCAAATCCGTGCAACTTGT
CGAAGCTCGCTTGTATAACTTAGCTAACGAAACAAACCCTTGATTSCGAA
TCTCGTATTAATATTTGGAACAAGTGAGCCGAATAGGGGTTGATCTTTAT
GTTGTTGAAAGATTATTTTGTGCACTTATTCTATCCAATCCAAGGTTAAT
GAACATATCCCAAAGTTCGGAGACCCGATTTCTGAATCTATCTAGTGTGC
ACCAACTTCTGGTTGGTTGCTCAACCKCTCGTTCAGAGAAATGATATCYR
CACACCCTTTTACRATAACTTCCGGTTGGTTTACCATAGAAKKCAAAAGC
AAAGATTTTACCAAGGYGGACAAAATCATCCAATTTTCTTATTTCCCAAG
TTCGAATCCCCAACTGTAATAACGAAGATTGTACGAAGACCGGCAATCCC
CCACCCCCATTAAGCAAAAAACGAAGGTTCTGCTAAGTTTGAATTCCAWA
CSTTTCCAAGCTATATAATTCGACRAGGGTGGTGCTATTCAATATTCACA
CACCTATTTTTTATCTCAAACACGCTTCTCTCAATTTTTTGGATTGTTAG
AAGAAAATCAATTGATAAAAATTAACAAGTAAAAATWAATGYGTGAAAAG
CACTYMYCTTTCGACAATGATTTACCGTTCTTAACTGCACGCCTTATGCA
CGTGCAAAAGCTCTCATCCTATTTCCTTCTCCCGCTAAGCTAAAAAGCTG
CYGTTGCTGAAAAGTGATAAATCTCACACTCATCGCTTCTATCTCATGGC
TTAATAGTAAAACACCCAATTGTTGAATTTACCCGGGCGACGAACAAGTT
GAGCTCTTGGCGCACCTCTGTCCATGGCGTCTCTTCCTTTCACTCACTTT
CTCCTCCTACCCAGGTTCCTCTCTCTTTCTCTCTCTCTTAAAATTCCAGT
CTTTTAATTCAAAACCGTGTGTTTTCTTTTGCTCCTTATCCAAACGGCAA
TCCAAAACTGAGCAGAAATGAGAATTAATTAGTAGTTAAATGAAAAATGT
GGAAACTTYTCTGGGTTTGGATAATTGTAGATTTTTGTTGGTGGGTTTTA
ACTTATAAGATAAACCCATGAAAAAACAACAGAATTTGCTTAAACCCTTA
AAACCCTACAATTAATTGCACCTCACTGTCTCCTTCCCAAGAAAAATTAG
TAAACTTGTCCRCTGAAATTTCCAGGTGCCATTCGGTTTGGCCCAATAGC
CGGTCGATGAGTTTCGTGCAGCTTCAGGGTCTTAGATTGCGTGGTAAAAA
AGGGGGACTTGCAGCTCTCCCTAAAAAGATAAACTCAGAGAACTCAGCTC
TGGAGGGTTCCGTTGAAGATGAGGAGGTGGTTGTGAAGAAGAAGACATCT
AGGACTCCTAGAAGAACCCGAAAGAAAGCAACATCCGATAATGAGTCTTC
GGATGAGGAAACTGTCATTTCTGCATCTAGTGAAGAGACCAAGAAACCGC
GTGGAAGAACTCGTAAGAAAGGTATTATTCCTACTTATTGCTCATTTAGT
ACTGTTACATGAATGTTTATCTTGTATGTGCTAACAAACCAGTAATTTGA
TATATCTAGTTGCATCAGCTTCCACAAGCGTGGAGGAAGAACAAACTGAG
AAGAAGGTAAGGAAGAGAAGAACTAAGAAGAAGGACGATGCGATTGAGCA
GCAGGTTAGTGACGGTGAACTTAGTGAGACTGAGGATTTTACATTCGTCA
TGGATATGAAGGATGAGAATGAGGAAGACCYAGAATTGAAAATTGATGAG
GGAGAGGATATTAGCGAAACTTACGATTGGCCTCCTCTTGTTTGTTGCTT
TGGAGCCGCACAACATGCTTTTGTGCYCTCAGGGAGGCCAGCCAACAGAC
TTGTAGATTATGAAATACATGAAAGAAAGAAAGATGCGTTATGGGCCCCT
GAGAAATTTATTAGGTCTCCTGGGGGATCTGCAGGCAGCGTYGCAATTGC
TCTTGCAAGCTTGGGAGGCAAGGTTGCTTTCATGGGAAAACTTGGAGATG
ATCAGTTTGGTCAGGCCATGCTGTATTATATGAATGTCAAAAATGTTCAA
ACCCGTTCTGTTCGCATGGATACTAAAAGGGCAACTGCAGTATCACAAAT
GAAGATTGGTAAAAGGGGTCGCATGAAATTGAGTTGTGTCAAACCATGTG
CTGAGGATTCTTTAACAAAGTCAGAGATCAACGTYGATGTGCTGAAGGAG
GTAAAATCTTGGGTCCCTTGGAATATTTAACTTTTATTGTAGATCCTGCT
ATTTAGGTGGTATATCTTTGTTGTGTTTCTTTGGAGGGGAGGGGGTGAAT
AAGAACTGCTGACATTCTATATCATACACAGTTTTCGGCAAATATACTTC
CATCTGTGATTCCCATTATATTTTGTCAATTTGAGTGCCTACGCATTAGA
TCTTTTAGCTGCATTTGTGGTTAGATTGCTCTTAACTGTGGACACCTTTT
AACAACATGTGGTGCAGGCAAAGATGTTTTACTTCAGCACAAATTCTCTG
CTTGATCGAAACATGAGGTCAACWACACTGCAGGCAATCAAGATTTCAAA
GAAACTTGGAGGAGTTATTTTCTACGATGTAAACCTTCCATTGCCACTAT
GGCAGTCTTGTGAAGAAACAAAGTTGTTCGTACAGCAAGTGTGGAATCTT
GCTGATATTATTGAAGTTACTAAGCAAGAGCTTGAGTTTCTCTGCGGGAT
CCAGCCCTCTGAGGAATTTGACACTAAAAATAATGACAGGTCAAAGTTTG
TCCATCATTCACCAGAAGTGGTTGAACAACTTTGGCATGACAATCTTAAG
GTTTTGTTCGTGACAAATGGGACTTCGAAGATACACTACTACACAAAGGA
CCACCAAGGTGCTGTTAACGGAATGGAAGATCCCCCCATCAGTCCTTTCA
CTTCTGATATGTCAGCATCTGGAGACGGCATTGTGGCRGGTACACTCCTA
TGAKTTGCAAATCTATCAAATTTTAGTTTCTTTAATGATCRAGCGTATCT
TCAAATGCTTTCACTATGAGAGTAGGTCCTGCTTAGCTCTTGCATTTGGG
TGTTTGGGTCAAGAAATGCAGATACAAGCCTATAGTTTATATTCCCTGGC
TTGTTCTGTTGATAAAGTTGTGTGTTGTAAGATTTAGATTCCGGCTATTA
GTTTGGKGCACTTTGTGTCAACTTTCACTCGCACACAAGGTATTYGCTGG
GCACAGTTCRTCATAGACAAAACTTGTACCTGGACTGATGTGGTGAAATT
ATCAATGAGTTGGAAAACAACATAAAACCGTGAGTTAACTCACAATTTTA
AACCTATGCATATAATTACATTGGCCGGTAGGTGAAAGACAATGAACTTG
GATAAAGTTCTGCATTACAAGCTAAATTTTTGTATTTCCTAACTTCTGCG
TGACTTGTTTTCAGCTCTCATGAGAATGTTGACAGTTCAACCACATCTTA
TTACTGATAAAGAATATCTGGAGCACTCAATCAACTATGCAATCGATTGC
GGAGTGATAGATCAATGGCTGCTTGGACAAGAACGCGGCTTCCCTCCGAA
GGAAGACATGGAAGAGGTGGTTCCTGATTCAGACGGTATAAGGTCGATAA
CAGAAATGGAATATCGCACTCTGACACCAGAGACTGTAAGTTGA

mRNA from alignment at chr13:3804040..3809083+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000319973 ID=MDP0000319973; Name=MDP0000319973; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:3804040..3809083+ (Malus x domestica

mRNA from alignment at MDC003581.256:4544..9587+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000319973 ID=MDP0000319973; Name=MDP0000319973; organism=Malus x domestica; type=mRNA; length=5044bp; location=Sequence derived from: MDC003581.256:4544..9587+ (Malus x domestica
ATGGCGCAGCAAGCAGTGCAGAAGAACACGCTGTACGTCGGAGGACTGGC
GGAGGAGGTGAACGAGTCCATACTCCACGCGGCGTTCATACCCTTCGGGG
ACATCAAGGACGTCAAGACGCCTCTCGATCAAGCCACCCAGAAGCACCGC
TCTTTTGGGTTCGTCACGTTCTTGGAGAGAGAGGACGCCGCCGCCGCCAT
GGACAACATGGACGGCGCCGAGCTCTACGGCCGCGTCCTCACTGTTAATT
ATGCCCTCCCTGAGAAAATCAAGGGCGGTGAACAGGGTTGGGCCGCTCAG
CCCAGTAAGTCCTTGTTCCCTTTTACTCCTACTCCTCAATCCTCCTTCCA
TTGTTATTACTTYTGTGTGGATTTGAATGTTAGCTTGATTTGTTTAGATG
GGTTTGGTTGATTTATTAATTATTTGGGTTATCTGGGATGTTTCGATTTT
TGGGTTTTGTTGTGAAATTTGGTTCTAGGGTTCGTGATTGATGCTCTTTG
GGGTYMACTTCTTGTTGTTATTAAGTGTGTATGTTAGTGTAGCTGTTTCG
ACTTTGGGGGTTTAGGGTTTTAGGATTCAATCTGGGTATGCAGTCAATTT
TACTTTAGATTTAGATTCATGATTAGGATTCAGGAAGATACTGAGCTCTG
GTATTTAGATGCTTTTTTGRTGATCCGYCTCGTTTCACCCAAGTTCGAAT
ACTCAGCCTCGTAGATTAGATTCATGGAACTTTAACGAAAAGCTTCCGTT
ACTGTTTATTTTGACGAAAAAYCATATTTTTACACTAAAAAGACAACTTT
ACYYTTTATTTTGTCCTTATCGTTAAAACTCAAAAGTTTCAAACTCTTTT
CATTAGTTTTCTTTAGATTCATTAGAATGTATACATTGTTTTGTGAAAAA
GAAAAGGGGTTGAAAGAAAATAGAACGATGACATCGAATTAGAAACAGTT
GAATAGCATTTTGAAGTTAATGATCGTCGTTGAACTAAAATTACCTGCTC
TTGTGTTCAACTCAAATTGCTTAAATTGTTTGTCCGTTGAGATTAATGTT
CATTCCGAATCAAGCTTRAAATTTTAGGTATGCTTAGCATCTTTCGTTGC
TTTGTTAYTACAGTTTGGGCAGATGCAGACACGTGGTTTGAGAGACAGCA
ACAAGAAGAGGAAATGCAGCGTATTCAGGCAGAGAACAAGGCTGCCATGC
AGGCCGCGGAAGAGTTGCACAGGAAAAAATTGACGCAAGAACGAGAAGGG
GAAAAAGAAGAGGAGATCGAGATGAAGGACGACCCCATGGCAAGGGCTGA
GGCAGAGGTTTTGCAACAGAGTGACTAGTGTTCCACTGCTTCCAAGTGAA
CAKTATGTGAGGAGTATGCAGTTTTGTTCTGTCAAATCCGTGCAACTTGT
CGAAGCTCGCTTGTATAACTTAGCTAACGAAACAAACCCTTGATTSCGAA
TCTCGTATTAATATTTGGAACAAGTGAGCCGAATAGGGGTTGATCTTTAT
GTTGTTGAAAGATTATTTTGTGCACTTATTCTATCCAATCCAAGGTTAAT
GAACATATCCCAAAGTTCGGAGACCCGATTTCTGAATCTATCTAGTGTGC
ACCAACTTCTGGTTGGTTGCTCAACCKCTCGTTCAGAGAAATGATATCYR
CACACCCTTTTACRATAACTTCCGGTTGGTTTACCATAGAAKKCAAAAGC
AAAGATTTTACCAAGGYGGACAAAATCATCCAATTTTCTTATTTCCCAAG
TTCGAATCCCCAACTGTAATAACGAAGATTGTACGAAGACCGGCAATCCC
CCACCCCCATTAAGCAAAAAACGAAGGTTCTGCTAAGTTTGAATTCCAWA
CSTTTCCAAGCTATATAATTCGACRAGGGTGGTGCTATTCAATATTCACA
CACCTATTTTTTATCTCAAACACGCTTCTCTCAATTTTTTGGATTGTTAG
AAGAAAATCAATTGATAAAAATTAACAAGTAAAAATWAATGYGTGAAAAG
CACTYMYCTTTCGACAATGATTTACCGTTCTTAACTGCACGCCTTATGCA
CGTGCAAAAGCTCTCATCCTATTTCCTTCTCCCGCTAAGCTAAAAAGCTG
CYGTTGCTGAAAAGTGATAAATCTCACACTCATCGCTTCTATCTCATGGC
TTAATAGTAAAACACCCAATTGTTGAATTTACCCGGGCGACGAACAAGTT
GAGCTCTTGGCGCACCTCTGTCCATGGCGTCTCTTCCTTTCACTCACTTT
CTCCTCCTACCCAGGTTCCTCTCTCTTTCTCTCTCTCTTAAAATTCCAGT
CTTTTAATTCAAAACCGTGTGTTTTCTTTTGCTCCTTATCCAAACGGCAA
TCCAAAACTGAGCAGAAATGAGAATTAATTAGTAGTTAAATGAAAAATGT
GGAAACTTYTCTGGGTTTGGATAATTGTAGATTTTTGTTGGTGGGTTTTA
ACTTATAAGATAAACCCATGAAAAAACAACAGAATTTGCTTAAACCCTTA
AAACCCTACAATTAATTGCACCTCACTGTCTCCTTCCCAAGAAAAATTAG
TAAACTTGTCCRCTGAAATTTCCAGGTGCCATTCGGTTTGGCCCAATAGC
CGGTCGATGAGTTTCGTGCAGCTTCAGGGTCTTAGATTGCGTGGTAAAAA
AGGGGGACTTGCAGCTCTCCCTAAAAAGATAAACTCAGAGAACTCAGCTC
TGGAGGGTTCCGTTGAAGATGAGGAGGTGGTTGTGAAGAAGAAGACATCT
AGGACTCCTAGAAGAACCCGAAAGAAAGCAACATCCGATAATGAGTCTTC
GGATGAGGAAACTGTCATTTCTGCATCTAGTGAAGAGACCAAGAAACCGC
GTGGAAGAACTCGTAAGAAAGGTATTATTCCTACTTATTGCTCATTTAGT
ACTGTTACATGAATGTTTATCTTGTATGTGCTAACAAACCAGTAATTTGA
TATATCTAGTTGCATCAGCTTCCACAAGCGTGGAGGAAGAACAAACTGAG
AAGAAGGTAAGGAAGAGAAGAACTAAGAAGAAGGACGATGCGATTGAGCA
GCAGGTTAGTGACGGTGAACTTAGTGAGACTGAGGATTTTACATTCGTCA
TGGATATGAAGGATGAGAATGAGGAAGACCYAGAATTGAAAATTGATGAG
GGAGAGGATATTAGCGAAACTTACGATTGGCCTCCTCTTGTTTGTTGCTT
TGGAGCCGCACAACATGCTTTTGTGCYCTCAGGGAGGCCAGCCAACAGAC
TTGTAGATTATGAAATACATGAAAGAAAGAAAGATGCGTTATGGGCCCCT
GAGAAATTTATTAGGTCTCCTGGGGGATCTGCAGGCAGCGTYGCAATTGC
TCTTGCAAGCTTGGGAGGCAAGGTTGCTTTCATGGGAAAACTTGGAGATG
ATCAGTTTGGTCAGGCCATGCTGTATTATATGAATGTCAAAAATGTTCAA
ACCCGTTCTGTTCGCATGGATACTAAAAGGGCAACTGCAGTATCACAAAT
GAAGATTGGTAAAAGGGGTCGCATGAAATTGAGTTGTGTCAAACCATGTG
CTGAGGATTCTTTAACAAAGTCAGAGATCAACGTYGATGTGCTGAAGGAG
GTAAAATCTTGGGTCCCTTGGAATATTTAACTTTTATTGTAGATCCTGCT
ATTTAGGTGGTATATCTTTGTTGTGTTTCTTTGGAGGGGAGGGGGTGAAT
AAGAACTGCTGACATTCTATATCATACACAGTTTTCGGCAAATATACTTC
CATCTGTGATTCCCATTATATTTTGTCAATTTGAGTGCCTACGCATTAGA
TCTTTTAGCTGCATTTGTGGTTAGATTGCTCTTAACTGTGGACACCTTTT
AACAACATGTGGTGCAGGCAAAGATGTTTTACTTCAGCACAAATTCTCTG
CTTGATCGAAACATGAGGTCAACWACACTGCAGGCAATCAAGATTTCAAA
GAAACTTGGAGGAGTTATTTTCTACGATGTAAACCTTCCATTGCCACTAT
GGCAGTCTTGTGAAGAAACAAAGTTGTTCGTACAGCAAGTGTGGAATCTT
GCTGATATTATTGAAGTTACTAAGCAAGAGCTTGAGTTTCTCTGCGGGAT
CCAGCCCTCTGAGGAATTTGACACTAAAAATAATGACAGGTCAAAGTTTG
TCCATCATTCACCAGAAGTGGTTGAACAACTTTGGCATGACAATCTTAAG
GTTTTGTTCGTGACAAATGGGACTTCGAAGATACACTACTACACAAAGGA
CCACCAAGGTGCTGTTAACGGAATGGAAGATCCCCCCATCAGTCCTTTCA
CTTCTGATATGTCAGCATCTGGAGACGGCATTGTGGCRGGTACACTCCTA
TGAKTTGCAAATCTATCAAATTTTAGTTTCTTTAATGATCRAGCGTATCT
TCAAATGCTTTCACTATGAGAGTAGGTCCTGCTTAGCTCTTGCATTTGGG
TGTTTGGGTCAAGAAATGCAGATACAAGCCTATAGTTTATATTCCCTGGC
TTGTTCTGTTGATAAAGTTGTGTGTTGTAAGATTTAGATTCCGGCTATTA
GTTTGGKGCACTTTGTGTCAACTTTCACTCGCACACAAGGTATTYGCTGG
GCACAGTTCRTCATAGACAAAACTTGTACCTGGACTGATGTGGTGAAATT
ATCAATGAGTTGGAAAACAACATAAAACCGTGAGTTAACTCACAATTTTA
AACCTATGCATATAATTACATTGGCCGGTAGGTGAAAGACAATGAACTTG
GATAAAGTTCTGCATTACAAGCTAAATTTTTGTATTTCCTAACTTCTGCG
TGACTTGTTTTCAGCTCTCATGAGAATGTTGACAGTTCAACCACATCTTA
TTACTGATAAAGAATATCTGGAGCACTCAATCAACTATGCAATCGATTGC
GGAGTGATAGATCAATGGCTGCTTGGACAAGAACGCGGCTTCCCTCCGAA
GGAAGACATGGAAGAGGTGGTTCCTGATTCAGACGGTATAAGGTCGATAA
CAGAAATGGAATATCGCACTCTGACACCAGAGACTGTAAGTTGA

Coding sequence (CDS) from alignment at MDC003581.256:4544..9587+

>MDP0000319973 ID=MDP0000319973; Name=MDP0000319973; organism=Malus x domestica; type=CDS; length=2127bp; location=Sequence derived from: MDC003581.256:4544..9587+ (Malus x domestica
ATGGCGCAGCAAGCAGTGCAGAAGAACACGCTGTACGTCGGAGGACTGGC
GGAGGAGGTGAACGAGTCCATACTCCACGCGGCGTTCATACCCTTCGGGG
ACATCAAGGACGTCAAGACGCCTCTCGATCAAGCCACCCAGAAGCACCGC
TCTTTTGGGTTCGTCACGTTCTTGGAGAGAGAGGACGCCGCCGCCGCCAT
GGACAACATGGACGGCGCCGAGCTCTACGGCCGCGTCCTCACTGTTAATT
ATGCCCTCCCTGAGAAAATCAAGGGCGGTGAACAGGGTTGGGCCGCTCAG
CCCAGTATGCTTAGCATCTTTCGTTGCTTTGTTAYTACAGTTTGGGCAGA
TGCAGACACGTGGTTTGAGAGACAGCAACAAGAAGAGGAAATGCAGCGTA
TTCAGGCAGAGAACAAGGCTGCCATGCAGGCCGCGGAAGAGTTGCACAGG
AAAAAATTGACGCAAGAACGAGAAGGGGAAAAAGAAGAGGAGATCGAGAT
GAAGGACGACCCCATGGCAAGGGCTGAGGCAGAGCTTCAGGGTCTTAGAT
TGCGTGGTAAAAAAGGGGGACTTGCAGCTCTCCCTAAAAAGATAAACTCA
GAGAACTCAGCTCTGGAGGGTTCCGTTGAAGATGAGGAGGTGGTTGTGAA
GAAGAAGACATCTAGGACTCCTAGAAGAACCCGAAAGAAAGCAACATCCG
ATAATGAGTCTTCGGATGAGGAAACTGTCATTTCTGCATCTAGTGAAGAG
ACCAAGAAACCGCGTGGAAGAACTCGTAAGAAAGTTGCATCAGCTTCCAC
AAGCGTGGAGGAAGAACAAACTGAGAAGAAGGTAAGGAAGAGAAGAACTA
AGAAGAAGGACGATGCGATTGAGCAGCAGGTTAGTGACGGTGAACTTAGT
GAGACTGAGGATTTTACATTCGTCATGGATATGAAGGATGAGAATGAGGA
AGACCYAGAATTGAAAATTGATGAGGGAGAGGATATTAGCGAAACTTACG
ATTGGCCTCCTCTTGTTTGTTGCTTTGGAGCCGCACAACATGCTTTTGTG
CYCTCAGGGAGGCCAGCCAACAGACTTGTAGATTATGAAATACATGAAAG
AAAGAAAGATGCGTTATGGGCCCCTGAGAAATTTATTAGGTCTCCTGGGG
GATCTGCAGGCAGCGTYGCAATTGCTCTTGCAAGCTTGGGAGGCAAGGTT
GCTTTCATGGGAAAACTTGGAGATGATCAGTTTGGTCAGGCCATGCTGTA
TTATATGAATGTCAAAAATGTTCAAACCCGTTCTGTTCGCATGGATACTA
AAAGGGCAACTGCAGTATCACAAATGAAGATTGGTAAAAGGGGTCGCATG
AAATTGAGTTGTGTCAAACCATGTGCTGAGGATTCTTTAACAAAGTCAGA
GATCAACGTYGATGTGCTGAAGGAGGCAAAGATGTTTTACTTCAGCACAA
ATTCTCTGCTTGATCGAAACATGAGGTCAACWACACTGCAGGCAATCAAG
ATTTCAAAGAAACTTGGAGGAGTTATTTTCTACGATGTAAACCTTCCATT
GCCACTATGGCAGTCTTGTGAAGAAACAAAGTTGTTCGTACAGCAAGTGT
GGAATCTTGCTGATATTATTGAAGTTACTAAGCAAGAGCTTGAGTTTCTC
TGCGGGATCCAGCCCTCTGAGGAATTTGACACTAAAAATAATGACAGGTC
AAAGTTTGTCCATCATTCACCAGAAGTGGTTGAACAACTTTGGCATGACA
ATCTTAAGGTTTTGTTCGTGACAAATGGGACTTCGAAGATACACTACTAC
ACAAAGGACCACCAAGGTGCTGTTAACGGAATGGAAGATCCCCCCATCAG
TCCTTTCACTTCTGATATGTCAGCATCTGGAGACGGCATTGTGGCRGCTC
TCATGAGAATGTTGACAGTTCAACCACATCTTATTACTGATAAAGAATAT
CTGGAGCACTCAATCAACTATGCAATCGATTGCGGAGTGATAGATCAATG
GCTGCTTGGACAAGAACGCGGCTTCCCTCCGAAGGAAGACATGGAAGAGG
TGGTTCCTGATTCAGACGGTATAAGGTCGATAACAGAAATGGAATATCGC
ACTCTGACACCAGAGACTGTAAGTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR011611	PfkB_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding