MDP0000370611, MDP0000370611 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000370611
Unique Name	MDP0000370611
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	5246

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr5	chromosome	chr5:1624857..1630102 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC001020.266	contig	MDC001020.266:6913..12158 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000370611_exon_1	MDP0000370611_exon_1	Malus x domestica	CDS
MDP0000370611_exon_2	MDP0000370611_exon_2	Malus x domestica	CDS
MDP0000370611_exon_3	MDP0000370611_exon_3	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000370611	MDP0000370611	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000070	Pectinesterase, catalytic	PFAM	PF01095	Pectinesterase	coord: 373..669 score: 7.5e
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 35..107 score: 8
IPR006501	Pectinesterase inhibitor	GENE3D	1.20.140.40	no description	coord: 183..330 score: 2.9
IPR006501	Pectinesterase inhibitor	PFAM	PF04043	PMEI	coord: 182..326 score: 8.2
IPR006501	Pectinesterase inhibitor	SMART	SM00856	Plant invertase/pectin methylesterase inhibi	coord: 177..328 score: 1.4
IPR006501	Pectinesterase inhibitor	TIGRFAMs	TIGR01614	PME_inhib: pectinesterase inhibitor domain	coord: 156..308 score: 1.3
IPR006501	Pectinesterase inhibitor	SUPERFAMILY	101148	Plant invertase/pectin methylesterase inhibitor	coord: 179..335 score: 9.1
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 366..684 score: 3.7e
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10	no description	coord: 370..683 score: 1e
IPR018040	Pectinesterase, active site	PROSITE	PS00503	PECTINESTERASE_2	coord: 517..526 score
IPR018040	Pectinesterase, active site	PROSITE	PS00800	PECTINESTERASE_1	coord: 398..417 score
IPR018222	Nuclear transport factor 2, Eukaryote	PROFILE	PS50177	NTF2_DOMAIN	coord: 13..129 score: 16
None	No IPR available	GENE3D	3.10.450.50	no description	coord: 8..107 score: 8.9
None	No IPR available	PANTHER	PTHR22931	FAMILY NOT NAMED	coord: 210..621 score: 1.8
None	No IPR available	PANTHER	PTHR22931:SF5	METHYLESTERASE INHIBITOR-RELATED	coord: 210..621 score: 1.8
None	No IPR available	SEG	seg	seg	coord: 412..423 score
None	No IPR available	SUPERFAMILY	54427	NTF2-like	coord: 9..107 score: 5
None	No IPR available	SEG	seg	seg	coord: 53..66 score
None	No IPR available	SEG	seg	seg	coord: 76..86 score
None	No IPR available	SEG	seg	seg	coord: 2..29 score
None	No IPR available	SEG	seg	seg	coord: 13..29 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:1624857..1630102-
mRNA from alignment at MDC001020.266:6913..12158-
coding sequence from alignment at MDC001020.266:6913..12158-

mRNA sequence

>MDP0000370611 ID=MDP0000370611; Name=MDP0000370611; organism=Malus x domestica; type=mRNA; length=5246bp
ATGGAAGATCGAAAAATGGAAGAGCAGGTTGCAATGGTGGGGAGGGCATT
TGTGGATCATTCCATTTATTTGATACTGATAGAGCTTCCCCTCTCTACCC
GTTACCAGCCTACCTCTATGCTGAGCTTTGAGGGGCAGAAGTTATTTGGC
GCCGACGATATATCTTCCAAGCTTAAACAGCTGCCGTTTGATCAAAGCAA
GCATTTGATCAGCACCATTGATTCCCAGCCATCGTCCCCAACCGGCGGCA
TTGTGGTTTTCGTCAGCGGTAGCCTCCAGTTACCGGGGGAAGAACACCTC
CTGAGATTCAGCCAGGTAATTTATTTATTTAATTTTCTGCRGATAACATG
GCGAAATACTAAAATGTGAACATATTTATTTAATTGTTGGGTGGTARAGY
ATCAACACGTACATAAAATTAGTGTAGYGGAGATAAGAATGCTTGTTGGA
TGTGTGGGCACACGAGAAATGATAAGATTAGGAATGAGGATATCCGAGGT
AAAGTAGGAGYAGCCGAAATTGAAGGAAAGATGAGAGAAAATSGGTTACG
TATACGGTGGTTTGGACACATGAAATGAAGGCCTACTGATGCTCTGGTTA
GAAAATGTGATTAYGGGACAGAGGTTCAGGGYCGAAGGGGTAGAGRAAGA
CCTAGAAGGACTTTGGAAGAGACTCCAAGAAAAGACTTAGAGTACTTGGA
TCTAACGGAAGACGCGACACAAAACCAAGCGTAATGACGTTTTATGATTA
TATAGCCGACCCCACTTAATGGGAAAAAGACTTTGTTGTTGTTGTAGATG
TTCCATTTGATCCCCACTCCAGAAGGAAGCTTCTTTGTGTAGAATGACAT
TTCGACTCAATTATGTTGGAAAACTAGGAGTATATAATATTAACAAGTAT
CCCAGATTACATATATTCAACTACGTGCGATACCTGGAGCAACCATGTTT
TTGGTTGGAAATGCAATTCTTCTACTTGTTTAAACCTTATGTTCCAAAGG
TGATAGAACCCTCATTCTCAGAACAATTCTTCACAAGTAGGGAATTGGAT
TATATAGACACATGCCTCATCTAATTTCCATCTATCGTGGAAATCAGTTA
CYTGCAGTTGCCRGCAGTTTTCACCGAATAATGGATAAGCMGTTATCATT
TGCTGCATGTTATCCACGTATCCTTGCTTATAGGAAGCAGTTTTCCACGT
TTGCAACTTACATCAGATTGTATTGTTACCAAAKACATTTCATCCTTCAC
TAAATGATTGTTTAGTCCAATTAAATTTCTAACAAATTATGGTTAATTAA
TTTGTAAATGGTAACTCAAGTACTACTGGGTTTTGCAAATTATTGTTGAA
ATGTCGTCGTAATCTTTGCTCGACTCTTGAAAGAATAAATATGTTATACC
TTGTTAATTTTCCATGAAATATCACCCGCAAACCAACGGAGAGAATATGA
CTCCATTAAATTTRATAAATRTTTACAACATATGTAGGGTTTGACAAAAC
CAATATGTCAAAGAAATCCTAARATAATTACATTCCTATAATTACGGAGA
AATTTCRGATTAACTAAATTTATCCTTACACACACACCCCACCCCATCCC
ATCACCTACCCTRCGCTCGCACGCACGCATGCAAATTGGACGAGCCTGAT
CGGACAAGTTTTGRAGCAAAGAGTWTCATGACAAGGCTAATGAAGGGCTT
TGGTAAGCAGGTTGATCAGCAGAAGAAATATAACAAACTCGTTGACTACT
AAGTGCAACTTTTTTAATGAATCAAATGATAATCAAGTGCAATATGACGT
GTGCAAGCATRATGAACAAGATTAGAAACAATATAAGTGGCATTAAGGTT
ATAACAGGGAAGGACAACTGAATCCAGTGCTCTCGGAGAAGATAACGATT
TCATGTAGTGCCGAACAAAAATAAGGTATGGTAAGGAACSAACCAACTCG
CGATGGTGACGAACGCAAAAAAAWTCTAGTAATAATAGTGAATAGTGCAT
TGCATTTCACATGCGTTTTGAAAGTGGGTGAGTTGGATTTAGGGGTGATT
CGGTATGAGATTCCAAACTGAAAATTTTTGGAASGGGAATTTGAAGAGCA
ATTCCAAACYAAAATTTCRGTATTCGTAATTAATTTTAGGTACTTMGGGA
TGGTTTGGTATTCTCAAATTTCATACAAATTGAAATAGCAATMATTCATA
CSAAGTTAAATTAATATTGCAACCAAAATAAAATAAGYAAYAAACCCAAA
ATCAAAAAAATAAGTTACAAACCTAATATGTTYRAAAACTAACAATACAA
TTTTTTGACACATTTGTTGGGGGTTCGTACTGGCAAATGTGGCGATAAAG
GGCTCTTGTTACTACCTTAGACCATGCCAATTATATTGCTACTAGTAGTT
AGCAACAATTCAAATCTATAATAATACATATATAAATATATAATAATATA
TATTATTTATTTTTGGTTCAGTATGAGATTACCGAAAGATTGAGTAGACA
ATACCGAATCTCGTATCGAAATTTTGAGATCGGTTCAGTATTTCATCCCA
AAAATTTCGGGAATTTTARTTTGGAATYGGAATTTTTTTRGATTGGTTCA
GAATTTTCAGGAWTTTTTTCCARCCCTAATTGGATTCCCACTAGTGTAGA
AGATTAGGTAATGCCCACTAGTTTATCCAAATTTGGTTTGGCACATTGCT
TTCTACAAATGCTCAACAACAATTTCTTCTTTTCACCAACACCCATGATG
GCTAATACTAAAATTAACTATTAATTAAGTTAGGCTATCCTTTAAAGCCT
CAAAGTTGAAAGATTCCCTCATAATTATGTCATAAAAAAACCAACAYTAC
CATGCTTTTCAAACCCTTATCTTAACCTTGTCAACWTGTAAATAAAGTTT
CACTCCAAACACAAGATCCTCTTCYATTRGTCGGTCAAGTAAGGTGATTA
GTCACCTCCAATTGTCATCGAACACACCAAAATCYTAAATTACACGCAAT
TGTATGTTTGAATGAAGAGTGTTATAATTAGTCGCACCCACTCATCTGAG
ATTTTCTTTTACTGTTGTRAATTTTGTATGCATCAATGGCCAAATTTAGC
TGATGCAAAAACTTGGATGATTGATTATGGTTGTGAAATCCTTATTTGAC
TAAATGGCTGAAGTGTAAGGTTAATGATGGTCATCGCTTGAAAAGTTAAC
TCTAGCTAATTAATAAATCCAAGGTTTATGACAATAATGATGCAGCTTGA
TGAATTTAAAATACATTATCATCATTCCTTAATTTACGGTTTTTCTATTT
AAGAACTATAGGACAAGAGAAACTAAGCAAAGCAGCCACAGAGATCTTAA
CCTAGCTACTAAGAATATGGCAATCCAGCAGCCTCTCCTTGAAGCTYTCA
AAACTACAACTTCCCACTGCAAACCCTACTCTCTAGTTCTCTGCTTAGTT
GCTGTTATAAGCTCAACTACWMTTTTTTCCATCCATGTGCTAACCAAATT
CGCCTCGTCCTCTAATCCTCCTTTAACTGGCTTAACCCAAGTCTGCGATC
ACGCGCTTGATCAGAAATCATGCTTATCCATAGTCTCAGAAACATCGCAT
GGCACAACCAAGCCAATGAGTGGTGCTGATCTATTACAAACCATCCTACA
AAATTCCATGCCACAATTACAAAAAACCCTAGATATTGCCAAAGTTGCGC
ACTCTCGGATCAACAGTCCAAAAGATCGAGCGGCTATCGTTGATTGCGTG
GAGCTGATGGATGTGACCAAAGACAGAGTTATGGACTCCATGGTAGCTCT
CCAGAAATTTGGTGCACATAATTATTATTCCCTTGAAGATGTGCATGGTT
GGCTTAGTAGTGTACTCACTAACCACGTCACTTGTTTGGATGGACTAGAA
GGTCCGGCCAGGACTATGATGGAGCCTTGGCTCAATGACTTGGTATCAAG
ATCAASAGCCTCCCTAGCCATTGTGGTTGCAATTTCCGATCGATCAAAGT
CAAACCCGATTAAGGAGCGGCTGGATGGGATTTTTCCAACTTGGGTCACA
AGCAAGGACAGAAGGCTTTTGCTGGATTCTAATTTGGCAAAGGAAAGTAA
TGCTAATGCTGTGGTTGCAAAGGATGGGAGTGGGAACTATAAGACTGTGA
AAGAAGCAGTGGCGGCAGCACCAGATAATAGCAAAACCAGGTACRCTATT
CATGTGAAAAAGGGAACTTACAAGGAAAATGTCGAGGTCGGGAAGAAAAA
GAAGAACTTGATGATKACTGGAGATGGCATGCATAACACAATCATCACTG
GCAGCCTCAATGTTGTTGATGGAGCAACCACTTTCAACTCCGCAACTCTA
GGTAATGATTTTAATGAAATTATTACGCATAGTAGGACCGGTTACAAACT
TTTCCTAAAAAATATAACGTAGAACACTAATCACACATCAAACTTAGGTT
TATATATATCTTCTCRTTTGTTTAGTGTCCCAAATATTGGATGTATTTAT
ATTATTCTAGCCTTAGAAATTGTGGGTTTCATTGGATTTGGTGTGCCAAT
GCAGCTGCTGTTGGTGATGGGTTTATAGCSCAAGACATTTGGTTCCAAAA
CACAGCTGGGGCAGCAAAGCACCAAGCTGTTGCACTCCGGGTTGGGGCAG
ATCGATCCGTGATAAACCGGTGTCGTATCGACGCCTACCAAGACACTCTC
TATGCCCACTCCAACAGGCAATTCTACAGAGATTCCTMCATCACAGGGAC
AGTGGACTTCATATTCGGAAATGCAGCTGTTGTGTTTCAAAACTGTAAAA
TCGTGGCCAGAAAGCCCATGACCGGACAAAACAACATGGTCACAGCACAA
GGACGTATAGACCCAAATCAAAACACTGGGACTTCTATTCAAAAATGCGA
TGTAGTTGCGAGCTCGGACTTAGAGCCYGTGAAAGGGACGATCCGATCTT
ACTTGGGTCGTCCATGGAAGGAGTACTCAAGGACTGTTGTGATGCAGTCC
AAGATTGGTGACCACATTGACCCAGCTGGGTGGTCTATTTGGTCTGGGGA
TTTTGCATTGAAGACATTGTATTATGGAGAGTATGCAAATAGTGGGCCTG
GTGCTGGTACTAGCAAGAGAGTGAAATGGGCTGGGTACCATGTGATCACA
AGCCCAAAAAAGGCCCAACCTTTCACTGTCGCGAACCTTATACAAGGTGG
GTCGTGGTTGAAGTCTACAGGGGTGACTTATACCGAAGGGTTGTGA

protein sequence of MDP0000370611

>MDP0000370611 ID=MDP0000370611; Name=MDP0000370611; organism=Malus x domestica; type=polypeptide; length=685bp
MEDRKMEEQVAMVGRAFVDHSIYLILIELPLSTRYQPTSMLSFEGQKLFG
ADDISSKLKQLPFDQSKHLISTIDSQPSSPTGGIVVFVSGSLQLPGEEHL
LRFSQNYRTRETKQSSHRDLNLATKNMAIQQPLLEAXKTTTSHCKPYSLV
LCLVAVISSTTXFSIHVLTKFASSSNPPLTGLTQVCDHALDQKSCLSIVS
ETSHGTTKPMSGADLLQTILQNSMPQLQKTLDIAKVAHSRINSPKDRAAI
VDCVELMDVTKDRVMDSMVALQKFGAHNYYSLEDVHGWLSSVLTNHVTCL
DGLEGPARTMMEPWLNDLVSRSXASLAIVVAISDRSKSNPIKERLDGIFP
TWVTSKDRRLLLDSNLAKESNANAVVAKDGSGNYKTVKEAVAAAPDNSKT
RYXIHVKKGTYKENVEVGKKKKNLMXTGDGMHNTIITGSLNVVDGATTFN
SATLAAVGDGFIAQDIWFQNTAGAAKHQAVALRVGADRSVINRCRIDAYQ
DTLYAHSNRQFYRDSXITGTVDFIFGNAAVVFQNCKIVARKPMTGQNNMV
TAQGRIDPNQNTGTSIQKCDVVASSDLEPVKGTIRSYLGRPWKEYSRTVV
MQSKIGDHIDPAGWSIWSGDFALKTLYYGEYANSGPGAGTSKRVKWAGYH
VITSPKKAQPFTVANLIQGGSWLKSTGVTYTEGL*

mRNA from alignment at chr5:1624857..1630102-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000370611 ID=MDP0000370611; Name=MDP0000370611; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr5:1624857..1630102- (Malus x domestica

mRNA from alignment at MDC001020.266:6913..12158-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000370611 ID=MDP0000370611; Name=MDP0000370611; organism=Malus x domestica; type=mRNA; length=5246bp; location=Sequence derived from: MDC001020.266:6913..12158- (Malus x domestica
ATGGAAGATCGAAAAATGGAAGAGCAGGTTGCAATGGTGGGGAGGGCATT
TGTGGATCATTCCATTTATTTGATACTGATAGAGCTTCCCCTCTCTACCC
GTTACCAGCCTACCTCTATGCTGAGCTTTGAGGGGCAGAAGTTATTTGGC
GCCGACGATATATCTTCCAAGCTTAAACAGCTGCCGTTTGATCAAAGCAA
GCATTTGATCAGCACCATTGATTCCCAGCCATCGTCCCCAACCGGCGGCA
TTGTGGTTTTCGTCAGCGGTAGCCTCCAGTTACCGGGGGAAGAACACCTC
CTGAGATTCAGCCAGGTAATTTATTTATTTAATTTTCTGCRGATAACATG
GCGAAATACTAAAATGTGAACATATTTATTTAATTGTTGGGTGGTARAGY
ATCAACACGTACATAAAATTAGTGTAGYGGAGATAAGAATGCTTGTTGGA
TGTGTGGGCACACGAGAAATGATAAGATTAGGAATGAGGATATCCGAGGT
AAAGTAGGAGYAGCCGAAATTGAAGGAAAGATGAGAGAAAATSGGTTACG
TATACGGTGGTTTGGACACATGAAATGAAGGCCTACTGATGCTCTGGTTA
GAAAATGTGATTAYGGGACAGAGGTTCAGGGYCGAAGGGGTAGAGRAAGA
CCTAGAAGGACTTTGGAAGAGACTCCAAGAAAAGACTTAGAGTACTTGGA
TCTAACGGAAGACGCGACACAAAACCAAGCGTAATGACGTTTTATGATTA
TATAGCCGACCCCACTTAATGGGAAAAAGACTTTGTTGTTGTTGTAGATG
TTCCATTTGATCCCCACTCCAGAAGGAAGCTTCTTTGTGTAGAATGACAT
TTCGACTCAATTATGTTGGAAAACTAGGAGTATATAATATTAACAAGTAT
CCCAGATTACATATATTCAACTACGTGCGATACCTGGAGCAACCATGTTT
TTGGTTGGAAATGCAATTCTTCTACTTGTTTAAACCTTATGTTCCAAAGG
TGATAGAACCCTCATTCTCAGAACAATTCTTCACAAGTAGGGAATTGGAT
TATATAGACACATGCCTCATCTAATTTCCATCTATCGTGGAAATCAGTTA
CYTGCAGTTGCCRGCAGTTTTCACCGAATAATGGATAAGCMGTTATCATT
TGCTGCATGTTATCCACGTATCCTTGCTTATAGGAAGCAGTTTTCCACGT
TTGCAACTTACATCAGATTGTATTGTTACCAAAKACATTTCATCCTTCAC
TAAATGATTGTTTAGTCCAATTAAATTTCTAACAAATTATGGTTAATTAA
TTTGTAAATGGTAACTCAAGTACTACTGGGTTTTGCAAATTATTGTTGAA
ATGTCGTCGTAATCTTTGCTCGACTCTTGAAAGAATAAATATGTTATACC
TTGTTAATTTTCCATGAAATATCACCCGCAAACCAACGGAGAGAATATGA
CTCCATTAAATTTRATAAATRTTTACAACATATGTAGGGTTTGACAAAAC
CAATATGTCAAAGAAATCCTAARATAATTACATTCCTATAATTACGGAGA
AATTTCRGATTAACTAAATTTATCCTTACACACACACCCCACCCCATCCC
ATCACCTACCCTRCGCTCGCACGCACGCATGCAAATTGGACGAGCCTGAT
CGGACAAGTTTTGRAGCAAAGAGTWTCATGACAAGGCTAATGAAGGGCTT
TGGTAAGCAGGTTGATCAGCAGAAGAAATATAACAAACTCGTTGACTACT
AAGTGCAACTTTTTTAATGAATCAAATGATAATCAAGTGCAATATGACGT
GTGCAAGCATRATGAACAAGATTAGAAACAATATAAGTGGCATTAAGGTT
ATAACAGGGAAGGACAACTGAATCCAGTGCTCTCGGAGAAGATAACGATT
TCATGTAGTGCCGAACAAAAATAAGGTATGGTAAGGAACSAACCAACTCG
CGATGGTGACGAACGCAAAAAAAWTCTAGTAATAATAGTGAATAGTGCAT
TGCATTTCACATGCGTTTTGAAAGTGGGTGAGTTGGATTTAGGGGTGATT
CGGTATGAGATTCCAAACTGAAAATTTTTGGAASGGGAATTTGAAGAGCA
ATTCCAAACYAAAATTTCRGTATTCGTAATTAATTTTAGGTACTTMGGGA
TGGTTTGGTATTCTCAAATTTCATACAAATTGAAATAGCAATMATTCATA
CSAAGTTAAATTAATATTGCAACCAAAATAAAATAAGYAAYAAACCCAAA
ATCAAAAAAATAAGTTACAAACCTAATATGTTYRAAAACTAACAATACAA
TTTTTTGACACATTTGTTGGGGGTTCGTACTGGCAAATGTGGCGATAAAG
GGCTCTTGTTACTACCTTAGACCATGCCAATTATATTGCTACTAGTAGTT
AGCAACAATTCAAATCTATAATAATACATATATAAATATATAATAATATA
TATTATTTATTTTTGGTTCAGTATGAGATTACCGAAAGATTGAGTAGACA
ATACCGAATCTCGTATCGAAATTTTGAGATCGGTTCAGTATTTCATCCCA
AAAATTTCGGGAATTTTARTTTGGAATYGGAATTTTTTTRGATTGGTTCA
GAATTTTCAGGAWTTTTTTCCARCCCTAATTGGATTCCCACTAGTGTAGA
AGATTAGGTAATGCCCACTAGTTTATCCAAATTTGGTTTGGCACATTGCT
TTCTACAAATGCTCAACAACAATTTCTTCTTTTCACCAACACCCATGATG
GCTAATACTAAAATTAACTATTAATTAAGTTAGGCTATCCTTTAAAGCCT
CAAAGTTGAAAGATTCCCTCATAATTATGTCATAAAAAAACCAACAYTAC
CATGCTTTTCAAACCCTTATCTTAACCTTGTCAACWTGTAAATAAAGTTT
CACTCCAAACACAAGATCCTCTTCYATTRGTCGGTCAAGTAAGGTGATTA
GTCACCTCCAATTGTCATCGAACACACCAAAATCYTAAATTACACGCAAT
TGTATGTTTGAATGAAGAGTGTTATAATTAGTCGCACCCACTCATCTGAG
ATTTTCTTTTACTGTTGTRAATTTTGTATGCATCAATGGCCAAATTTAGC
TGATGCAAAAACTTGGATGATTGATTATGGTTGTGAAATCCTTATTTGAC
TAAATGGCTGAAGTGTAAGGTTAATGATGGTCATCGCTTGAAAAGTTAAC
TCTAGCTAATTAATAAATCCAAGGTTTATGACAATAATGATGCAGCTTGA
TGAATTTAAAATACATTATCATCATTCCTTAATTTACGGTTTTTCTATTT
AAGAACTATAGGACAAGAGAAACTAAGCAAAGCAGCCACAGAGATCTTAA
CCTAGCTACTAAGAATATGGCAATCCAGCAGCCTCTCCTTGAAGCTYTCA
AAACTACAACTTCCCACTGCAAACCCTACTCTCTAGTTCTCTGCTTAGTT
GCTGTTATAAGCTCAACTACWMTTTTTTCCATCCATGTGCTAACCAAATT
CGCCTCGTCCTCTAATCCTCCTTTAACTGGCTTAACCCAAGTCTGCGATC
ACGCGCTTGATCAGAAATCATGCTTATCCATAGTCTCAGAAACATCGCAT
GGCACAACCAAGCCAATGAGTGGTGCTGATCTATTACAAACCATCCTACA
AAATTCCATGCCACAATTACAAAAAACCCTAGATATTGCCAAAGTTGCGC
ACTCTCGGATCAACAGTCCAAAAGATCGAGCGGCTATCGTTGATTGCGTG
GAGCTGATGGATGTGACCAAAGACAGAGTTATGGACTCCATGGTAGCTCT
CCAGAAATTTGGTGCACATAATTATTATTCCCTTGAAGATGTGCATGGTT
GGCTTAGTAGTGTACTCACTAACCACGTCACTTGTTTGGATGGACTAGAA
GGTCCGGCCAGGACTATGATGGAGCCTTGGCTCAATGACTTGGTATCAAG
ATCAASAGCCTCCCTAGCCATTGTGGTTGCAATTTCCGATCGATCAAAGT
CAAACCCGATTAAGGAGCGGCTGGATGGGATTTTTCCAACTTGGGTCACA
AGCAAGGACAGAAGGCTTTTGCTGGATTCTAATTTGGCAAAGGAAAGTAA
TGCTAATGCTGTGGTTGCAAAGGATGGGAGTGGGAACTATAAGACTGTGA
AAGAAGCAGTGGCGGCAGCACCAGATAATAGCAAAACCAGGTACRCTATT
CATGTGAAAAAGGGAACTTACAAGGAAAATGTCGAGGTCGGGAAGAAAAA
GAAGAACTTGATGATKACTGGAGATGGCATGCATAACACAATCATCACTG
GCAGCCTCAATGTTGTTGATGGAGCAACCACTTTCAACTCCGCAACTCTA
GGTAATGATTTTAATGAAATTATTACGCATAGTAGGACCGGTTACAAACT
TTTCCTAAAAAATATAACGTAGAACACTAATCACACATCAAACTTAGGTT
TATATATATCTTCTCRTTTGTTTAGTGTCCCAAATATTGGATGTATTTAT
ATTATTCTAGCCTTAGAAATTGTGGGTTTCATTGGATTTGGTGTGCCAAT
GCAGCTGCTGTTGGTGATGGGTTTATAGCSCAAGACATTTGGTTCCAAAA
CACAGCTGGGGCAGCAAAGCACCAAGCTGTTGCACTCCGGGTTGGGGCAG
ATCGATCCGTGATAAACCGGTGTCGTATCGACGCCTACCAAGACACTCTC
TATGCCCACTCCAACAGGCAATTCTACAGAGATTCCTMCATCACAGGGAC
AGTGGACTTCATATTCGGAAATGCAGCTGTTGTGTTTCAAAACTGTAAAA
TCGTGGCCAGAAAGCCCATGACCGGACAAAACAACATGGTCACAGCACAA
GGACGTATAGACCCAAATCAAAACACTGGGACTTCTATTCAAAAATGCGA
TGTAGTTGCGAGCTCGGACTTAGAGCCYGTGAAAGGGACGATCCGATCTT
ACTTGGGTCGTCCATGGAAGGAGTACTCAAGGACTGTTGTGATGCAGTCC
AAGATTGGTGACCACATTGACCCAGCTGGGTGGTCTATTTGGTCTGGGGA
TTTTGCATTGAAGACATTGTATTATGGAGAGTATGCAAATAGTGGGCCTG
GTGCTGGTACTAGCAAGAGAGTGAAATGGGCTGGGTACCATGTGATCACA
AGCCCAAAAAAGGCCCAACCTTTCACTGTCGCGAACCTTATACAAGGTGG
GTCGTGGTTGAAGTCTACAGGGGTGACTTATACCGAAGGGTTGTGA

Coding sequence (CDS) from alignment at MDC001020.266:6913..12158-

>MDP0000370611 ID=MDP0000370611; Name=MDP0000370611; organism=Malus x domestica; type=CDS; length=2055bp; location=Sequence derived from: MDC001020.266:6913..12158- (Malus x domestica
ATGGAAGATCGAAAAATGGAAGAGCAGGTTGCAATGGTGGGGAGGGCATT
TGTGGATCATTCCATTTATTTGATACTGATAGAGCTTCCCCTCTCTACCC
GTTACCAGCCTACCTCTATGCTGAGCTTTGAGGGGCAGAAGTTATTTGGC
GCCGACGATATATCTTCCAAGCTTAAACAGCTGCCGTTTGATCAAAGCAA
GCATTTGATCAGCACCATTGATTCCCAGCCATCGTCCCCAACCGGCGGCA
TTGTGGTTTTCGTCAGCGGTAGCCTCCAGTTACCGGGGGAAGAACACCTC
CTGAGATTCAGCCAGAACTATAGGACAAGAGAAACTAAGCAAAGCAGCCA
CAGAGATCTTAACCTAGCTACTAAGAATATGGCAATCCAGCAGCCTCTCC
TTGAAGCTYTCAAAACTACAACTTCCCACTGCAAACCCTACTCTCTAGTT
CTCTGCTTAGTTGCTGTTATAAGCTCAACTACWMTTTTTTCCATCCATGT
GCTAACCAAATTCGCCTCGTCCTCTAATCCTCCTTTAACTGGCTTAACCC
AAGTCTGCGATCACGCGCTTGATCAGAAATCATGCTTATCCATAGTCTCA
GAAACATCGCATGGCACAACCAAGCCAATGAGTGGTGCTGATCTATTACA
AACCATCCTACAAAATTCCATGCCACAATTACAAAAAACCCTAGATATTG
CCAAAGTTGCGCACTCTCGGATCAACAGTCCAAAAGATCGAGCGGCTATC
GTTGATTGCGTGGAGCTGATGGATGTGACCAAAGACAGAGTTATGGACTC
CATGGTAGCTCTCCAGAAATTTGGTGCACATAATTATTATTCCCTTGAAG
ATGTGCATGGTTGGCTTAGTAGTGTACTCACTAACCACGTCACTTGTTTG
GATGGACTAGAAGGTCCGGCCAGGACTATGATGGAGCCTTGGCTCAATGA
CTTGGTATCAAGATCAASAGCCTCCCTAGCCATTGTGGTTGCAATTTCCG
ATCGATCAAAGTCAAACCCGATTAAGGAGCGGCTGGATGGGATTTTTCCA
ACTTGGGTCACAAGCAAGGACAGAAGGCTTTTGCTGGATTCTAATTTGGC
AAAGGAAAGTAATGCTAATGCTGTGGTTGCAAAGGATGGGAGTGGGAACT
ATAAGACTGTGAAAGAAGCAGTGGCGGCAGCACCAGATAATAGCAAAACC
AGGTACRCTATTCATGTGAAAAAGGGAACTTACAAGGAAAATGTCGAGGT
CGGGAAGAAAAAGAAGAACTTGATGATKACTGGAGATGGCATGCATAACA
CAATCATCACTGGCAGCCTCAATGTTGTTGATGGAGCAACCACTTTCAAC
TCCGCAACTCTAGCTGCTGTTGGTGATGGGTTTATAGCSCAAGACATTTG
GTTCCAAAACACAGCTGGGGCAGCAAAGCACCAAGCTGTTGCACTCCGGG
TTGGGGCAGATCGATCCGTGATAAACCGGTGTCGTATCGACGCCTACCAA
GACACTCTCTATGCCCACTCCAACAGGCAATTCTACAGAGATTCCTMCAT
CACAGGGACAGTGGACTTCATATTCGGAAATGCAGCTGTTGTGTTTCAAA
ACTGTAAAATCGTGGCCAGAAAGCCCATGACCGGACAAAACAACATGGTC
ACAGCACAAGGACGTATAGACCCAAATCAAAACACTGGGACTTCTATTCA
AAAATGCGATGTAGTTGCGAGCTCGGACTTAGAGCCYGTGAAAGGGACGA
TCCGATCTTACTTGGGTCGTCCATGGAAGGAGTACTCAAGGACTGTTGTG
ATGCAGTCCAAGATTGGTGACCACATTGACCCAGCTGGGTGGTCTATTTG
GTCTGGGGATTTTGCATTGAAGACATTGTATTATGGAGAGTATGCAAATA
GTGGGCCTGGTGCTGGTACTAGCAAGAGAGTGAAATGGGCTGGGTACCAT
GTGATCACAAGCCCAAAAAAGGCCCAACCTTTCACTGTCGCGAACCTTAT
ACAAGGTGGGTCGTGGTTGAAGTCTACAGGGGTGACTTATACCGAAGGGT
TGTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000070	Pectinesterase_cat
IPR002075	NTF2_dom
IPR006501	Pectinesterase_inhib_dom
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold
IPR018040	Pectinesterase_Tyr_AS
IPR018222	Nuclear_transport_factor_2_euk

Vocabulary: **Cellular Component**
Term	Definition
GO:0005618	cell wall
GO:0005622	intracellular anatomical structure

Vocabulary: **Molecular Function**
Term	Definition
GO:0030599	pectinesterase activity
GO:0004857	enzyme inhibitor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0042545	cell wall modification
GO:0006810	transport