MDP0000417096, MDP0000417096 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000417096
Unique NameMDP0000417096
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1212
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000417096_exon_1MDP0000417096_exon_1Malus x domesticaCDS
MDP0000417096_exon_2MDP0000417096_exon_2Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000417096MDP0000417096Malus x domesticapolypeptide


Homology
[Close]
BLAST of MDP0000417096 vs. NCBI nr
Match: gi|15230730|ref|NP_187299.1| (DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] >gi|75313790|sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 >gi|6437557|gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] >gi|332640879|gb|AEE74400.1| DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana])

HSP 1 Score: 67.3958 bits (163), Expect = 9.280e-10
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYPTHS 279
            +DPTLP PW+ + DG+ G+LYYW+PETNV+QYE P   P HS
Sbjct:   18 EDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAPPPHS 59
[Close]
BLAST of MDP0000417096 vs. NCBI nr
Match: gi|359477631|ref|XP_002274485.2| (PREDICTED: uncharacterized protein LOC100252874 [Vitis vinifera])

HSP 1 Score: 63.5438 bits (153), Expect = 1.340e-8
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYP 270
            DPTLP PW+ + DG+ G+LYYW+PETN++QYE+P   P
Sbjct:   19 DPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALP 56
[Close]
BLAST of MDP0000417096 vs. NCBI nr
Match: gi|297736781|emb|CBI25982.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 63.5438 bits (153), Expect = 1.340e-8
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYP 270
            DPTLP PW+ + DG+ G+LYYW+PETN++QYE+P   P
Sbjct:   19 DPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALP 56
[Close]
BLAST of MDP0000417096 vs. NCBI nr
Match: gi|255564033|ref|XP_002523015.1| (dead box ATP-dependent RNA helicase, putative [Ricinus communis] >gi|223537737|gb|EEF39357.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis])

HSP 1 Score: 63.5438 bits (153), Expect = 1.340e-8
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYP 270
            +DPTLP PW  + DG+ G+LYYW+PETNV+QYE+P   P
Sbjct:   18 EDPTLPKPWMGLIDGSTGLLYYWNPETNVTQYEKPASVP 56
[Close]
BLAST of MDP0000417096 vs. NCBI nr
Match: gi|297833410|ref|XP_002884587.1| (hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp. lyrata] >gi|297330427|gb|EFH60846.1| hypothetical protein ARALYDRAFT_477953 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 63.1586 bits (152), Expect = 1.750e-8
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +DPTLP PW+ + DG+ G+LYYW+PETNV+QYE P
Sbjct:   18 EDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERP 52
[Close]
BLAST of MDP0000417096 vs. NCBI nr
Match: gi|168038086|ref|XP_001771533.1| (predicted protein [Physcomitrella patens subsp. patens] >gi|162677260|gb|EDQ63733.1| predicted protein [Physcomitrella patens subsp. patens])

HSP 1 Score: 63.1586 bits (152), Expect = 1.750e-8
Identity = 22/36 (61.11%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPV 261
            +DPTLP PWR + DGN G +YYW+PETN++QY++P+
Sbjct:   15 EDPTLPAPWRALVDGNTGYIYYWNPETNITQYDKPL 50
[Close]
BLAST of MDP0000417096 vs. NCBI nr
Match: gi|356558103|ref|XP_003547347.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like [Glycine max])

HSP 1 Score: 62.3882 bits (150), Expect = 2.985e-8
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            DPTLP PW+ + DG+ G+LYYW+PETNV+QYE+P
Sbjct:   19 DPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKP 52
[Close]
BLAST of MDP0000417096 vs. NCBI nr
Match: gi|356532479|ref|XP_003534800.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 40-like [Glycine max])

HSP 1 Score: 62.3882 bits (150), Expect = 2.985e-8
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            DPTLP PW+ + DG+ G+LYYW+PETNV+QYE+P
Sbjct:   19 DPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKP 52
[Close]
BLAST of MDP0000417096 vs. NCBI nr
Match: gi|357448701|ref|XP_003594626.1| (DEAD-box ATP-dependent RNA helicase [Medicago truncatula] >gi|355483674|gb|AES64877.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula])

HSP 1 Score: 62.3882 bits (150), Expect = 2.985e-8
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            DPTLP PW+ + DG+ G+LYYW+PETNV+QYE+P
Sbjct:   15 DPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKP 48
[Close]
BLAST of MDP0000417096 vs. NCBI nr
Match: gi|293331893|ref|NP_001169380.1| (uncharacterized protein LOC100383248 [Zea mays] >gi|224029005|gb|ACN33578.1| unknown [Zea mays])

HSP 1 Score: 62.3882 bits (150), Expect = 2.985e-8
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPV 261
            DPTLP PWR + DG  G LYYW+PETNV+QYE PV
Sbjct:   19 DPTLPKPWRGLVDGATGYLYYWNPETNVTQYERPV 53
[Close]
BLAST of MDP0000417096 vs. Vitis vinifera
Match: GSVIVT01017652001 (assembled CDS)

HSP 1 Score: 63.5438 bits (153), Expect = 2.032e-11
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYP 270
            DPTLP PW+ + DG+ G+LYYW+PETN++QYE+P   P
Sbjct:   19 DPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALP 56
[Close]
BLAST of MDP0000417096 vs. Vitis vinifera
Match: GSVIVT01032443001 (assembled CDS)

HSP 1 Score: 59.3066 bits (142), Expect = 3.832e-10
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +DPTLP PW+ + DG  G LY+W+PETNV+QYE P
Sbjct:   13 EDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERP 47
[Close]
BLAST of MDP0000417096 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.740e-11
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYPTHS 279
            +DPTLP PW+ + DG+ G+LYYW+PETNV+QYE P   P HS
Sbjct:   18 EDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAPPPHS 59
[Close]
BLAST of MDP0000417096 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 3.349e-9
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPV 261
            DP+LP PWR + DG  G LYYW+PETN++QYE+P+
Sbjct:   16 DPSLPKPWRGLVDGTTGYLYYWNPETNITQYEKPL 50
[Close]
BLAST of MDP0000417096 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.662e-8
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYPTHS 279
            DPTLP PWR + DGN G LY+W+PET   QY+ P   P  S
Sbjct:   20 DPTLPKPWRGLIDGNTGYLYFWNPETKAVQYDRPTAPPPSS 60
[Close]
BLAST of MDP0000417096 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.835e-8
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPV 261
            +DPTLP PW+ + DG  G +Y+W+PETN +QYE PV
Sbjct:   16 EDPTLPKPWKGLVDGTTGFIYFWNPETNDTQYERPV 51
[Close]
BLAST of MDP0000417096 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 1.407e-7
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +DP LP PW+ + D   G LY+W+PETNV+QYE P
Sbjct:   13 EDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERP 47
[Close]
BLAST of MDP0000417096 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2)

HSP 1 Score: 53.9138 bits (128), Expect = 3.135e-7
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +D TLP PW+ + D   G LY+W+PETNV+QYE+P
Sbjct:   15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
[Close]
BLAST of MDP0000417096 vs. ExPASy TrEMBL
Match: F6HE23_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g00470 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.503e-8
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYP 270
            DPTLP PW+ + DG+ G+LYYW+PETN++QYE+P   P
Sbjct:   19 DPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALP 56
[Close]
BLAST of MDP0000417096 vs. ExPASy TrEMBL
Match: B9SAJ6_RICCO (Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0726500 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.503e-8
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYP 270
            +DPTLP PW  + DG+ G+LYYW+PETNV+QYE+P   P
Sbjct:   18 EDPTLPKPWMGLIDGSTGLLYYWNPETNVTQYEKPASVP 56
[Close]
BLAST of MDP0000417096 vs. ExPASy TrEMBL
Match: D7L5I4_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_477953 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.964e-8
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +DPTLP PW+ + DG+ G+LYYW+PETNV+QYE P
Sbjct:   18 EDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERP 52
[Close]
BLAST of MDP0000417096 vs. ExPASy TrEMBL
Match: A9SYT2_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_107194 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.964e-8
Identity = 22/36 (61.11%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPV 261
            +DPTLP PWR + DGN G +YYW+PETN++QY++P+
Sbjct:   15 EDPTLPAPWRALVDGNTGYIYYWNPETNITQYDKPL 50
[Close]
BLAST of MDP0000417096 vs. ExPASy TrEMBL
Match: I1MGA4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.349e-8
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            DPTLP PW+ + DG+ G+LYYW+PETNV+QYE+P
Sbjct:   19 DPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKP 52
[Close]
BLAST of MDP0000417096 vs. ExPASy TrEMBL
Match: I1L0L8_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.349e-8
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            DPTLP PW+ + DG+ G+LYYW+PETNV+QYE+P
Sbjct:   19 DPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKP 52
[Close]
BLAST of MDP0000417096 vs. ExPASy TrEMBL
Match: G7IKZ2_MEDTR (DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_2g032630 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.349e-8
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            DPTLP PW+ + DG+ G+LYYW+PETNV+QYE+P
Sbjct:   15 DPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKP 48
[Close]
BLAST of MDP0000417096 vs. ExPASy TrEMBL
Match: C0PEG2_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.349e-8
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPV 261
            DPTLP PWR + DG  G LYYW+PETNV+QYE PV
Sbjct:   19 DPTLPKPWRGLVDGATGYLYYWNPETNVTQYERPV 53
[Close]
BLAST of MDP0000417096 vs. ExPASy TrEMBL
Match: B9HX85_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_880189 PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.349e-8
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYP 270
            +DPTLP PW  + DG+ G+LYYW+PETN++QYE+P   P
Sbjct:   18 EDPTLPKPWTGLIDGSTGLLYYWNPETNITQYEKPPSVP 56
[Close]
BLAST of MDP0000417096 vs. ExPASy TrEMBL
Match: C5XNF0_SORBI (Putative uncharacterized protein Sb03g004420 OS=Sorghum bicolor GN=Sb03g004420 PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.374e-8
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPV 261
            DPTLP PWR + DGN G LY+W+PET V+QYE PV
Sbjct:   19 DPTLPKPWRGLIDGNTGYLYFWNPETKVTQYERPV 53
[Close]
BLAST of MDP0000417096 vs. TAIR10
Match: AT3G06480.1 (| Symbols: | DEAD box RNA helicase family protein | chr3:1985697-1989666 REVERSE LENGTH=1088)

HSP 1 Score: 67.3958 bits (163), Expect = 2.086e-12
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYPTHS 279
            +DPTLP PW+ + DG+ G+LYYW+PETNV+QYE P   P HS
Sbjct:   18 EDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPSAPPPHS 59
[Close]
BLAST of MDP0000417096 vs. TAIR10
Match: AT5G14610.2 (| Symbols: | DEAD box RNA helicase family protein | chr5:4711271-4714713 FORWARD LENGTH=645)

HSP 1 Score: 55.0694 bits (131), Expect = 1.071e-8
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +DP LP PW+ + D   G LY+W+PETNV+QYE P
Sbjct:   13 EDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERP 47
[Close]
BLAST of MDP0000417096 vs. TAIR10
Match: AT5G14610.1 (| Symbols: | DEAD box RNA helicase family protein | chr5:4711271-4714713 FORWARD LENGTH=712)

HSP 1 Score: 55.0694 bits (131), Expect = 1.071e-8
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +DP LP PW+ + D   G LY+W+PETNV+QYE P
Sbjct:   13 EDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERP 47
[Close]
BLAST of MDP0000417096 vs. TAIR10
Match: AT3G01540.4 (| Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=619)

HSP 1 Score: 53.9138 bits (128), Expect = 2.387e-8
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +D TLP PW+ + D   G LY+W+PETNV+QYE+P
Sbjct:   15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
[Close]
BLAST of MDP0000417096 vs. TAIR10
Match: AT3G01540.3 (| Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=619)

HSP 1 Score: 53.9138 bits (128), Expect = 2.387e-8
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +D TLP PW+ + D   G LY+W+PETNV+QYE+P
Sbjct:   15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
[Close]
BLAST of MDP0000417096 vs. TAIR10
Match: AT3G01540.1 (| Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=618)

HSP 1 Score: 53.9138 bits (128), Expect = 2.387e-8
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +D TLP PW+ + D   G LY+W+PETNV+QYE+P
Sbjct:   15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
[Close]
BLAST of MDP0000417096 vs. TAIR10
Match: AT3G01540.2 (| Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 | chr3:213077-216142 REVERSE LENGTH=619)

HSP 1 Score: 53.9138 bits (128), Expect = 2.387e-8
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +D TLP PW+ + D   G LY+W+PETNV+QYE+P
Sbjct:   15 EDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKP 49
[Close]
BLAST of MDP0000417096 vs. Populus trichicarpa v2.0
Match: POPTR_0010s16220.1 ()

HSP 1 Score: 62.3882 bits (150), Expect = 7.770e-11
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYP 270
            +DPTLP PW  + DG+ G+LYYW+PETN++QYE+P   P
Sbjct:   18 EDPTLPKPWTGLIDGSTGLLYYWNPETNITQYEKPPSVP 56
[Close]
BLAST of MDP0000417096 vs. Populus trichicarpa v2.0
Match: POPTR_0001s35150.1 ()

HSP 1 Score: 61.6178 bits (148), Expect = 1.325e-10
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPV------HYP-THSIGVHRIPH 303
            +DPTLP PWR + DG  G LY+W+PETNV+QYE P         P T S+ VH+  H
Sbjct:   17 EDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTLPKSVSSLPITSSVQVHQSSH 73
[Close]
BLAST of MDP0000417096 vs. Populus trichicarpa v2.0
Match: POPTR_0017s10760.1 ()

HSP 1 Score: 60.077 bits (144), Expect = 3.856e-10
Identity = 23/34 (67.65%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            DPTLP PWR + DG  G LY+W+PETNV+QYE P
Sbjct:   18 DPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERP 51
[Close]
BLAST of MDP0000417096 vs. GDR
Match: ppa000495m ()

HSP 1 Score: 63.5438 bits (153), Expect = 2.394e-11
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  157 DPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYP 270
            DPTLP PW+ + DG+ G+LYYW+PETN++QYE+P   P
Sbjct:   15 DPTLPNPWKGLIDGSTGLLYYWNPETNITQYEKPASLP 52
[Close]
BLAST of MDP0000417096 vs. GDR
Match: ppa002318m ()

HSP 1 Score: 59.3066 bits (142), Expect = 4.515e-10
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +DPTLP PWR + DG  G LY+W+PETNV+QY+ P
Sbjct:   16 EDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYDRP 50
[Close]
BLAST of MDP0000417096 vs. GDR
Match: ppa002303m ()

HSP 1 Score: 59.3066 bits (142), Expect = 4.515e-10
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:  154 KDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEP 258
            +DPTLP PWR + DG  G LY+W+PETNV+QY+ P
Sbjct:   16 EDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYDRP 50
The following BLAST results are available for this feature:
BLAST of MDP0000417096 vs. NCBI nr
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs NCBI nr)
Total hits: 25
Match NameE-valueIdentityDescription
gi|15230730|ref|NP_187299.1|9.280e-1061.90DEAD-box ATP-dependent RNA helicase 40 [Arabidopsi... [more]
gi|359477631|ref|XP_002274485.2|1.340e-860.53PREDICTED: uncharacterized protein LOC100252874 [V... [more]
gi|297736781|emb|CBI25982.3|1.340e-860.53unnamed protein product [Vitis vinifera][more]
gi|255564033|ref|XP_002523015.1|1.340e-861.54dead box ATP-dependent RNA helicase, putative [Ric... [more]
gi|297833410|ref|XP_002884587.1|1.750e-865.71hypothetical protein ARALYDRAFT_477953 [Arabidopsi... [more]
gi|168038086|ref|XP_001771533.1|1.750e-861.11predicted protein [Physcomitrella patens subsp. pa... [more]
gi|356558103|ref|XP_003547347.1|2.985e-867.65PREDICTED: DEAD-box ATP-dependent RNA helicase 40-... [more]
gi|356532479|ref|XP_003534800.1|2.985e-867.65PREDICTED: DEAD-box ATP-dependent RNA helicase 40-... [more]
gi|357448701|ref|XP_003594626.1|2.985e-867.65DEAD-box ATP-dependent RNA helicase [Medicago trun... [more]
gi|293331893|ref|NP_001169380.1|2.985e-871.43uncharacterized protein LOC100383248 [Zea mays] >g... [more]

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BLAST of MDP0000417096 vs. Vitis vinifera
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs Vitis vinifera)
Total hits: 2
Match NameE-valueIdentityDescription
GSVIVT010176520012.032e-1160.53assembled CDS[more]
GSVIVT010324430013.832e-1062.86assembled CDS[more]
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BLAST of MDP0000417096 vs. ExPASy Swiss-Prot
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs UniProt Swiss-Prot)
Total hits: 6
Match NameE-valueIdentityDescription
RH40_ARATH2.740e-1161.90DEAD-box ATP-dependent RNA helicase 40 OS=Arabidop... [more]
RH40_ORYSJ3.349e-962.86DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa... [more]
RH14_ORYSJ1.662e-856.10DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sa... [more]
DB10_NICSY2.835e-858.33ATP-dependent RNA helicase-like protein DB10 OS=Ni... [more]
RH46_ARATH1.407e-757.14DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop... [more]
RH14_ARATH3.135e-757.14DEAD-box ATP-dependent RNA helicase 14 OS=Arabidop... [more]
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BLAST of MDP0000417096 vs. ExPASy TrEMBL
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs UniProt TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
F6HE23_VITVI1.503e-860.53Putative uncharacterized protein OS=Vitis vinifera... [more]
B9SAJ6_RICCO1.503e-861.54Dead box ATP-dependent RNA helicase, putative OS=R... [more]
D7L5I4_ARALL1.964e-865.71Putative uncharacterized protein OS=Arabidopsis ly... [more]
A9SYT2_PHYPA1.964e-861.11Predicted protein OS=Physcomitrella patens subsp. ... [more]
I1MGA4_SOYBN3.349e-867.65Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
I1L0L8_SOYBN3.349e-867.65Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
G7IKZ2_MEDTR3.349e-867.65DEAD-box ATP-dependent RNA helicase OS=Medicago tr... [more]
C0PEG2_MAIZE3.349e-871.43Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
B9HX85_POPTR3.349e-858.97Predicted protein (Fragment) OS=Populus trichocarp... [more]
C5XNF0_SORBI4.374e-868.57Putative uncharacterized protein Sb03g004420 OS=So... [more]

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BLAST of MDP0000417096 vs. TAIR10
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs TAIR 10)
Total hits: 7
Match NameE-valueIdentityDescription
AT3G06480.12.086e-1261.90| Symbols: | DEAD box RNA helicase family protein... [more]
AT5G14610.21.071e-857.14| Symbols: | DEAD box RNA helicase family protein... [more]
AT5G14610.11.071e-857.14| Symbols: | DEAD box RNA helicase family protein... [more]
AT3G01540.42.387e-857.14| Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 ... [more]
AT3G01540.32.387e-857.14| Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 ... [more]
AT3G01540.12.387e-857.14| Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 ... [more]
AT3G01540.22.387e-857.14| Symbols: DRH1, ATDRH1 | DEAD box RNA helicase 1 ... [more]
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BLAST of MDP0000417096 vs. Populus trichicarpa v2.0
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs Populus trichocarpa v2.0)
Total hits: 3
Match NameE-valueIdentityDescription
POPTR_0010s16220.17.770e-1158.97[more]
POPTR_0001s35150.11.325e-1050.88[more]
POPTR_0017s10760.13.856e-1067.65[more]
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BLAST of MDP0000417096 vs. GDR
Analysis Date: 2012-07-23 (BLASTx of Malus x domestica v1.0 mRNA vs Prunus persica v1.0)
Total hits: 3
Match NameE-valueIdentityDescription
ppa000495m2.394e-1160.53[more]
ppa002318m4.515e-1062.86[more]
ppa002303m4.515e-1062.86[more]
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InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW/Rsp5/WWPGENE3D2.20.70.10no descriptioncoord: 52..88
score: 3.8
IPR001202WW/Rsp5/WWPPFAMPF00397WWcoord: 56..86
score: 4.2
IPR001202WW/Rsp5/WWPSMARTSM00456Domain with 2 conserved Trp (W) residuescoord: 55..88
score: 8.6
IPR001202WW/Rsp5/WWPPROSITEPS01159WW_DOMAIN_1coord: 60..86
score
IPR001202WW/Rsp5/WWPPROFILEPS50020WW_DOMAIN_2coord: 54..88
score: 11
IPR001202WW/Rsp5/WWPSUPERFAMILY51045WW domaincoord: 46..87
score: 1.9
IPR006566FBDPFAMPF08387FBDcoord: 6..46
score: 4.4
NoneNo IPR availableSEGsegsegcoord: 17..28
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000417096 ID=MDP0000417096; Name=MDP0000417096; organism=Malus x domestica; type=mRNA; length=1212bp
ATGCAGGAGATTAAAAGATGTCCTCATCAACGCCTTAAGGTGGTGAGATT
TTCTGGGTTCATTGGAATGGGAGGGTCAATTATCGATAAGGAATTTGCCA
TGTACTTGATGGAAAATGCTGTAGTACTTGAAAAGTTCTTCATGGATCTT
GAAAAGGTCGTCGGCCCTATATACTGCTAGAGTCTGTTACAACCGAAGAG
AAATTAGAAGCAACAAAGGAGCATGCTTTGCAGCTTATTGGAACACAATT
ACCACCTGGAGCTGAGTTGGTTATCATATAAGCCCTTTCATTTACCTGTT
TTTGCCGCATACTTGAAGCTCTTTTTAGACTGGAATATAATACGCAGCTT
TCAACAATTTATATTTTGACTTCATTTKGCTACTGATAGTATACATTTCA
TAATGTATGAGCGATATTTTAATGTATTGATTACTGTTACATGAGTTTGA
TTTAATTTGTCTATTAGATGAATTTTTAAATTTRAATTAATTTACAATTT
AATTATAGTTAAATAAAAGYTAAATGGTTATAAATTATATGGGCATATAT
ATRCCACTTAGTATTACGGTTTMATAATATTCTCTTTACTTGTAAGTGAA
AGCTYTTATATTCGATTTTCGTAAAAAACAAATTTAAATCAYATTATTAC
TAGTTTATTGTGAGGTTTAGCCCACACTCTTTTTTCCTAGGTAGAACGTT
TGTTTCCAGAAAAAACGAAGGGGGGCGTATATTCATGCCCACCCAAGGAA
ACGTGGAACATGCATTCGTCCCTCAATACGCAGGCTTTTCACTTTGGCCC
ATCCAAAAACCCGCGAACAATAACGAACCTACCCACAACCATGATCCGTC
ATGGCACCTCTGATAGCACACAAATCTCAAACCCCTGCAAAGCCCTAACT
TCTTCAACCTCACAGACCTTCCACCATCTGATGCGACTCTAACTTATCAG
GTTTTTGTTATAACTAATGTATTTCCATGAGGGAATTTTGGTTCGAATCT
TGGTTCGAATCGAGGGTCACTTGAATCTTTGGTTTGTTTCTTAGGATCCT
ACACTTCCCCCGCCGTGGAGGCGAGTGTTTGACGGTAACAATGGAGTTCT
GTACTACTGGCATCCCGAAACCAACGTTTCTCAGTATGAAGAACCAGTCC
ACTATCCGACGCACTCCATCGGAGTCCATCGAATCCCTCATTCCTATGCC
GTAGTGTTATGA
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protein sequence of MDP0000417096

>MDP0000417096 ID=MDP0000417096; Name=MDP0000417096; organism=Malus x domestica; type=polypeptide; length=108bp
MQEIKRCPHQRLKVVRFSGFIGMGGSIIDKEFAMYLMENAVVLEKFFMDL
EKDPTLPPPWRRVFDGNNGVLYYWHPETNVSQYEEPVHYPTHSIGVHRIP
HSYAVVL*
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mRNA from alignment at chr15:17284699..17285910+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000417096 ID=MDP0000417096; Name=MDP0000417096; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr15:17284699..17285910+ (Malus x domestica
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mRNA from alignment at MDC015346.240:6959..8170+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000417096 ID=MDP0000417096; Name=MDP0000417096; organism=Malus x domestica; type=mRNA; length=1212bp; location=Sequence derived from: MDC015346.240:6959..8170+ (Malus x domestica
ATGCAGGAGATTAAAAGATGTCCTCATCAACGCCTTAAGGTGGTGAGATT
TTCTGGGTTCATTGGAATGGGAGGGTCAATTATCGATAAGGAATTTGCCA
TGTACTTGATGGAAAATGCTGTAGTACTTGAAAAGTTCTTCATGGATCTT
GAAAAGGTCGTCGGCCCTATATACTGCTAGAGTCTGTTACAACCGAAGAG
AAATTAGAAGCAACAAAGGAGCATGCTTTGCAGCTTATTGGAACACAATT
ACCACCTGGAGCTGAGTTGGTTATCATATAAGCCCTTTCATTTACCTGTT
TTTGCCGCATACTTGAAGCTCTTTTTAGACTGGAATATAATACGCAGCTT
TCAACAATTTATATTTTGACTTCATTTKGCTACTGATAGTATACATTTCA
TAATGTATGAGCGATATTTTAATGTATTGATTACTGTTACATGAGTTTGA
TTTAATTTGTCTATTAGATGAATTTTTAAATTTRAATTAATTTACAATTT
AATTATAGTTAAATAAAAGYTAAATGGTTATAAATTATATGGGCATATAT
ATRCCACTTAGTATTACGGTTTMATAATATTCTCTTTACTTGTAAGTGAA
AGCTYTTATATTCGATTTTCGTAAAAAACAAATTTAAATCAYATTATTAC
TAGTTTATTGTGAGGTTTAGCCCACACTCTTTTTTCCTAGGTAGAACGTT
TGTTTCCAGAAAAAACGAAGGGGGGCGTATATTCATGCCCACCCAAGGAA
ACGTGGAACATGCATTCGTCCCTCAATACGCAGGCTTTTCACTTTGGCCC
ATCCAAAAACCCGCGAACAATAACGAACCTACCCACAACCATGATCCGTC
ATGGCACCTCTGATAGCACACAAATCTCAAACCCCTGCAAAGCCCTAACT
TCTTCAACCTCACAGACCTTCCACCATCTGATGCGACTCTAACTTATCAG
GTTTTTGTTATAACTAATGTATTTCCATGAGGGAATTTTGGTTCGAATCT
TGGTTCGAATCGAGGGTCACTTGAATCTTTGGTTTGTTTCTTAGGATCCT
ACACTTCCCCCGCCGTGGAGGCGAGTGTTTGACGGTAACAATGGAGTTCT
GTACTACTGGCATCCCGAAACCAACGTTTCTCAGTATGAAGAACCAGTCC
ACTATCCGACGCACTCCATCGGAGTCCATCGAATCCCTCATTCCTATGCC
GTAGTGTTATGA
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Coding sequence (CDS) from alignment at MDC015346.240:6959..8170+

>MDP0000417096 ID=MDP0000417096; Name=MDP0000417096; organism=Malus x domestica; type=CDS; length=324bp; location=Sequence derived from: MDC015346.240:6959..8170+ (Malus x domestica
ATGCAGGAGATTAAAAGATGTCCTCATCAACGCCTTAAGGTGGTGAGATT
TTCTGGGTTCATTGGAATGGGAGGGTCAATTATCGATAAGGAATTTGCCA
TGTACTTGATGGAAAATGCTGTAGTACTTGAAAAGTTCTTCATGGATCTT
GAAAAGGATCCTACACTTCCCCCGCCGTGGAGGCGAGTGTTTGACGGTAA
CAATGGAGTTCTGTACTACTGGCATCCCGAAACCAACGTTTCTCAGTATG
AAGAACCAGTCCACTATCCGACGCACTCCATCGGAGTCCATCGAATCCCT
CATTCCTATGCCGTAGTGTTATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR006566FBD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding