MDP0000435315, MDP0000435315 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000435315
Unique Name	MDP0000435315
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1957

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr3	chromosome	chr3:7586759..7588715 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC009159.412	contig	MDC009159.412:2511..4467 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.0	2012-04-02

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000435315_exon_1	MDP0000435315_exon_1	Malus x domestica	CDS
MDP0000435315_exon_2	MDP0000435315_exon_2	Malus x domestica	CDS
MDP0000435315_exon_3	MDP0000435315_exon_3	Malus x domestica	CDS

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..61 score: 2.1e-14coord: 67..112 score: 1.3
IPR001005	SANT/Myb domain	SMART	SM00717	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bin	coord: 13..63 score: 9.2e-14coord: 66..114 score: 1.4
IPR009057	Homeodomain-like	GENE3D	1.10.10.60	no description	coord: 5..68 score: 6.5e-27coord: 69..117 score: 3.3
IPR009057	Homeodomain-like	SUPERFAMILY	46689	Homeodomain-like	coord: 14..113 score: 9.2
IPR015495	Myb transcription factor	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 1..240 score: 1.8
IPR017930	Myb domain, DNA-binding	PROFILE	PS51294	HTH_MYB	coord: 62..116 score: 26.493coord: 9..61 score: 16
None	No IPR available	SEG	seg	seg	coord: 120..138 score: NAcoord: 156..168 score

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at chr3:7586759..7588715-
mRNA from alignment at MDC009159.412:2511..4467-
coding sequence from alignment at MDC009159.412:2511..4467-

mRNA sequence

>MDP0000435315 ID=MDP0000435315; Name=MDP0000435315; organism=Malus x domestica; type=mRNA; length=1957bp
ATGGGGAGAGCTCCTTGCTGTGAGAAGATGGGACTGAAGAAGGGGCCATG
GACCTCTGAAGAAGATCAAATTCTTACATCCTTCATCCACAAATATGGCC
ATGGAAATTGGCGTGCCCTGCCAAAGCAAGCTGGTAATTACAACTTCCCA
TCTGGGTTTTTTTTTCTCCAAAGATATATAGGCCACAAAGATCGGTTCTC
CAATCAAAGATAGTATTCCACATCTTTGCATTGCATGATGATTGCAAACC
TGGATTAAGTTAGCTAGCTATAGAAGTYTATTCTCCTCTGTTGCACCCAA
CTTCGAATTTTGCTTCTCGTAATTTAAATGAATTTAGTGTAGAGTACCAT
TTTTCTAAAAAATGTTACACACCATTTATGCATGTTTCATGTTGAATTAA
TTAAACAAAAACTAAAACTGGAAAATTAACAATAATAATTAAGAACACTT
CAATAGCTGCKAAATAGCAACGTTGCTATGATTGCTTTGAGCCTTGGATT
CATCTTTTTCACTTGTTTTTTTTTTCTTGAAATAGGGTTGTTGAGATGTG
GAAAGAGCTGCCGACTCCGGTGGATAAACTATTTGAGGCCGGATATTAAG
AGAGGAAACTTCACAAGAGAAGAAGAGGAAGCTATCATTAAGTTGCATGA
AATGCTGGGTAACAGGTAAATAAAAGCATCAAATTTTAATTTTCATGAAA
CTTTCGTAATTAAGCTAGTTTCAAAACATGCATGTTTATCTAGCCTTTTT
ACCCTGCTGCCAACTATCAAGTTATCAATCATAAGGAGGATTAACATAGT
CAAATTAATAAGAAAATTTCTATCAAACTCATTAAGACTTGTTTTTTCAA
AGAAGAAGGGCATTTATACATGTACTCGAGATCTGAGGTCAAATATGCAC
ACCCTACTCTCKAGCCTCGCTTATGAACCAAAAAATAAAATACAGGATCG
TTTCTCGGACACACAAATCAAAGGCACTGATTTTCTGTTAGAGAATAGCA
AGTGGGAGCTGGCAAAAAAKATTCTCTATTTGGAAGCCACCACAATAGAC
ATAATTTGATTGTAAATAACATGCAACCATGAGGTTGATAAATGATTGTC
TTACGATGCAGTCACAACTCTCAAATCTCAAATTTAAGCAAAAAATTTTA
GGACAATTAGCTGAAATAAATATATTTTGACATTTGAYATTTTATTACAG
AAATGATCAGTGTTTTTGTTTTTTCATTATTATATTATCATTATATTGTT
GTTGTGTCGTCGATATGTGATTGTCATTATTAAAAAATAATCATTACTGT
GAACCAAACATCAAAGCATGTTATTGTAGCTATTTTCCCAAAATTACATA
CTTGTTAGWTAAATTATCTTGCAAATGCTTAATTTAAATCTTTTGTTTCG
TTTTCAGGTGGTCAGCAATTGCAGCAAGATTACCAGGACGCACCGATAAC
GAAATAAAAAATGTATGGCACACCCACTTGAAAAAAAGACTCAAAGATCA
TACTACAACAACATCATCAACAACATCAACAAGAAGTAGTAGTAACAGTA
CTTCCAATGTMAMAAGCCAATTTGTTGATGAACCTGAAAATTTGAATTAT
CCACAACCATCTTCTAGTGATGTTTCCTCCTCAGTCACAAAAGTCTCAGC
TGCATTGAGTACCGATCAGGACACAATCGTCGTCAAGGGCGAAAACATGG
AGTTGTCGGAAACCTTCCCCGATATTGATGATGACAGCTTCTGGTCAGAG
GCACTTTCAACTGATAATTCCAGCGTCCCATTACAATTTCCAAAGGCCTC
AAATGATGAACCAATATCGGAGTTTCCCATCACCAAAAACGATTCGGAGG
AATTTGGTTTTAGTTTTGGTCTAAACATGGATGATGGCATGGAATTTTGG
TATGATCTTTTCATTAGAACTGGTCATGGGGGAACGCCAGAATTACCAGA
ATTTTGA

mRNA from alignment at chr3:7586759..7588715-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000435315 ID=MDP0000435315; Name=MDP0000435315; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr3:7586759..7588715- (Malus x domestica

mRNA from alignment at MDC009159.412:2511..4467-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000435315 ID=MDP0000435315; Name=MDP0000435315; organism=Malus x domestica; type=mRNA; length=1957bp; location=Sequence derived from: MDC009159.412:2511..4467- (Malus x domestica
ATGGGGAGAGCTCCTTGCTGTGAGAAGATGGGACTGAAGAAGGGGCCATG
GACCTCTGAAGAAGATCAAATTCTTACATCCTTCATCCACAAATATGGCC
ATGGAAATTGGCGTGCCCTGCCAAAGCAAGCTGGTAATTACAACTTCCCA
TCTGGGTTTTTTTTTCTCCAAAGATATATAGGCCACAAAGATCGGTTCTC
CAATCAAAGATAGTATTCCACATCTTTGCATTGCATGATGATTGCAAACC
TGGATTAAGTTAGCTAGCTATAGAAGTYTATTCTCCTCTGTTGCACCCAA
CTTCGAATTTTGCTTCTCGTAATTTAAATGAATTTAGTGTAGAGTACCAT
TTTTCTAAAAAATGTTACACACCATTTATGCATGTTTCATGTTGAATTAA
TTAAACAAAAACTAAAACTGGAAAATTAACAATAATAATTAAGAACACTT
CAATAGCTGCKAAATAGCAACGTTGCTATGATTGCTTTGAGCCTTGGATT
CATCTTTTTCACTTGTTTTTTTTTTCTTGAAATAGGGTTGTTGAGATGTG
GAAAGAGCTGCCGACTCCGGTGGATAAACTATTTGAGGCCGGATATTAAG
AGAGGAAACTTCACAAGAGAAGAAGAGGAAGCTATCATTAAGTTGCATGA
AATGCTGGGTAACAGGTAAATAAAAGCATCAAATTTTAATTTTCATGAAA
CTTTCGTAATTAAGCTAGTTTCAAAACATGCATGTTTATCTAGCCTTTTT
ACCCTGCTGCCAACTATCAAGTTATCAATCATAAGGAGGATTAACATAGT
CAAATTAATAAGAAAATTTCTATCAAACTCATTAAGACTTGTTTTTTCAA
AGAAGAAGGGCATTTATACATGTACTCGAGATCTGAGGTCAAATATGCAC
ACCCTACTCTCKAGCCTCGCTTATGAACCAAAAAATAAAATACAGGATCG
TTTCTCGGACACACAAATCAAAGGCACTGATTTTCTGTTAGAGAATAGCA
AGTGGGAGCTGGCAAAAAAKATTCTCTATTTGGAAGCCACCACAATAGAC
ATAATTTGATTGTAAATAACATGCAACCATGAGGTTGATAAATGATTGTC
TTACGATGCAGTCACAACTCTCAAATCTCAAATTTAAGCAAAAAATTTTA
GGACAATTAGCTGAAATAAATATATTTTGACATTTGAYATTTTATTACAG
AAATGATCAGTGTTTTTGTTTTTTCATTATTATATTATCATTATATTGTT
GTTGTGTCGTCGATATGTGATTGTCATTATTAAAAAATAATCATTACTGT
GAACCAAACATCAAAGCATGTTATTGTAGCTATTTTCCCAAAATTACATA
CTTGTTAGWTAAATTATCTTGCAAATGCTTAATTTAAATCTTTTGTTTCG
TTTTCAGGTGGTCAGCAATTGCAGCAAGATTACCAGGACGCACCGATAAC
GAAATAAAAAATGTATGGCACACCCACTTGAAAAAAAGACTCAAAGATCA
TACTACAACAACATCATCAACAACATCAACAAGAAGTAGTAGTAACAGTA
CTTCCAATGTMAMAAGCCAATTTGTTGATGAACCTGAAAATTTGAATTAT
CCACAACCATCTTCTAGTGATGTTTCCTCCTCAGTCACAAAAGTCTCAGC
TGCATTGAGTACCGATCAGGACACAATCGTCGTCAAGGGCGAAAACATGG
AGTTGTCGGAAACCTTCCCCGATATTGATGATGACAGCTTCTGGTCAGAG
GCACTTTCAACTGATAATTCCAGCGTCCCATTACAATTTCCAAAGGCCTC
AAATGATGAACCAATATCGGAGTTTCCCATCACCAAAAACGATTCGGAGG
AATTTGGTTTTAGTTTTGGTCTAAACATGGATGATGGCATGGAATTTTGG
TATGATCTTTTCATTAGAACTGGTCATGGGGGAACGCCAGAATTACCAGA
ATTTTGA

Coding sequence (CDS) from alignment at MDC009159.412:2511..4467-

>MDP0000435315 ID=MDP0000435315; Name=MDP0000435315; organism=Malus x domestica; type=CDS; length=813bp; location=Sequence derived from: MDC009159.412:2511..4467- (Malus x domestica
ATGGGGAGAGCTCCTTGCTGTGAGAAGATGGGACTGAAGAAGGGGCCATG
GACCTCTGAAGAAGATCAAATTCTTACATCCTTCATCCACAAATATGGCC
ATGGAAATTGGCGTGCCCTGCCAAAGCAAGCTGGGTTGTTGAGATGTGGA
AAGAGCTGCCGACTCCGGTGGATAAACTATTTGAGGCCGGATATTAAGAG
AGGAAACTTCACAAGAGAAGAAGAGGAAGCTATCATTAAGTTGCATGAAA
TGCTGGGTAACAGGTGGTCAGCAATTGCAGCAAGATTACCAGGACGCACC
GATAACGAAATAAAAAATGTATGGCACACCCACTTGAAAAAAAGACTCAA
AGATCATACTACAACAACATCATCAACAACATCAACAAGAAGTAGTAGTA
ACAGTACTTCCAATGTMAMAAGCCAATTTGTTGATGAACCTGAAAATTTG
AATTATCCACAACCATCTTCTAGTGATGTTTCCTCCTCAGTCACAAAAGT
CTCAGCTGCATTGAGTACCGATCAGGACACAATCGTCGTCAAGGGCGAAA
ACATGGAGTTGTCGGAAACCTTCCCCGATATTGATGATGACAGCTTCTGG
TCAGAGGCACTTTCAACTGATAATTCCAGCGTCCCATTACAATTTCCAAA
GGCCTCAAATGATGAACCAATATCGGAGTTTCCCATCACCAAAAACGATT
CGGAGGAATTTGGTTTTAGTTTTGGTCTAAACATGGATGATGGCATGGAA
TTTTGGTATGATCTTTTCATTAGAACTGGTCATGGGGGAACGCCAGAATT
ACCAGAATTTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeodomain-like_sf
IPR015495	Myb_TF_plants
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0005515	protein binding