MDP0000486156, MDP0000486156 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000486156
Unique NameMDP0000486156
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length603
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000486156_exon_1MDP0000486156_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000486156MDP0000486156Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184Ring fingercoord: 108..149
score: 1.1
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 108..150
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10no descriptioncoord: 106..153
score: 2.7
NoneNo IPR availablePANTHERPTHR22765FAMILY NOT NAMEDcoord: 20..150
score: 2.6
NoneNo IPR availablePANTHERPTHR22765:SF22OS05G0478000 PROTEINcoord: 20..150
score: 2.6
NoneNo IPR availablePFAMPF13639zf-RING_2coord: 107..151
score: 2.9
NoneNo IPR availableSEGsegsegcoord: 38..51
score: NAcoord: 155..200
score
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 82..156
score: 1.1
NoneNo IPR availableSEGsegsegcoord: 73..89
score: NAcoord: 107..116
score
NoneNo IPR availableSEGsegsegcoord: 151..155
score
NoneNo IPR availableSEGsegsegcoord: 20..42
score: NAcoord: 43..55
score
NoneNo IPR availableSEGsegsegcoord: 48..58
score
NoneNo IPR availableSEGsegsegcoord: 5..9
score: NAcoord: 17..49
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000486156 ID=MDP0000486156; Name=MDP0000486156; organism=Malus x domestica; type=mRNA; length=603bp
ATGCATCGACATCTCCTCGGAACAGCGCTGAACACGGCGGCGCCGTCGTC
CAATGGGAACAGAACCGCCGATTCGTTCATTAACGAGGCCAACTTCGACA
CCAACATGGTGATCATATTGGCGGCCTTGCTGTGTGCTCTGATATGCGCG
CTTGGTCTCAACTCGATCGTCCGCTGCGCCCTCCGCTGCAGCCATAGGTT
CGTTCTCGAGACGCCGGAGCAGGCGGCAGCGCGGTTGGCCGCCACCGGCT
TGAAGAAGAGCCATTTGAGGCAAATCCCAATTGCGGTGTACGGCTCCGGC
GTGAATATTCCGGCCACCGAATGCCCAATCTGTCTTACGGAGTTCGAAGA
CGGAGAAAAAGTTCGAGTCTTGCCAAAATGCAATCACGGATTCCATGTGA
GGTGCATAGACACGTGGTTTCTGTCGCACTCCTCGTGTCCGAATTGTCGG
CACTCGCTGCTGAGTACGAGTTCWRCGGCAGCTGCCGTTGCTGCAGATTC
AAGTGGAGAAGCTGCGGCGGCGGAGGAGGAGTCACCGGCAGCGGCCAATG
AGTCCAGCCAGCAAGGTGGCAGAGTAGTGGTAGTGGTCGAGCAGGGGAGT
TAA
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protein sequence of MDP0000486156

>MDP0000486156 ID=MDP0000486156; Name=MDP0000486156; organism=Malus x domestica; type=polypeptide; length=201bp
MHRHLLGTALNTAAPSSNGNRTADSFINEANFDTNMVIILAALLCALICA
LGLNSIVRCALRCSHRFVLETPEQAAARLAATGLKKSHLRQIPIAVYGSG
VNIPATECPICLTEFEDGEKVRVLPKCNHGFHVRCIDTWFLSHSSCPNCR
HSLLSTSSXAAAVAADSSGEAAAAEEESPAAANESSQQGGRVVVVVEQGS
*
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mRNA from alignment at chr12:26076178..26076780-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000486156 ID=MDP0000486156; Name=MDP0000486156; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr12:26076178..26076780- (Malus x domestica
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mRNA from alignment at MDC008490.386:4055..4657-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000486156 ID=MDP0000486156; Name=MDP0000486156; organism=Malus x domestica; type=mRNA; length=603bp; location=Sequence derived from: MDC008490.386:4055..4657- (Malus x domestica
ATGCATCGACATCTCCTCGGAACAGCGCTGAACACGGCGGCGCCGTCGTC
CAATGGGAACAGAACCGCCGATTCGTTCATTAACGAGGCCAACTTCGACA
CCAACATGGTGATCATATTGGCGGCCTTGCTGTGTGCTCTGATATGCGCG
CTTGGTCTCAACTCGATCGTCCGCTGCGCCCTCCGCTGCAGCCATAGGTT
CGTTCTCGAGACGCCGGAGCAGGCGGCAGCGCGGTTGGCCGCCACCGGCT
TGAAGAAGAGCCATTTGAGGCAAATCCCAATTGCGGTGTACGGCTCCGGC
GTGAATATTCCGGCCACCGAATGCCCAATCTGTCTTACGGAGTTCGAAGA
CGGAGAAAAAGTTCGAGTCTTGCCAAAATGCAATCACGGATTCCATGTGA
GGTGCATAGACACGTGGTTTCTGTCGCACTCCTCGTGTCCGAATTGTCGG
CACTCGCTGCTGAGTACGAGTTCWRCGGCAGCTGCCGTTGCTGCAGATTC
AAGTGGAGAAGCTGCGGCGGCGGAGGAGGAGTCACCGGCAGCGGCCAATG
AGTCCAGCCAGCAAGGTGGCAGAGTAGTGGTAGTGGTCGAGCAGGGGAGT
TAA
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Coding sequence (CDS) from alignment at MDC008490.386:4055..4657-

>MDP0000486156 ID=MDP0000486156; Name=MDP0000486156; organism=Malus x domestica; type=CDS; length=603bp; location=Sequence derived from: MDC008490.386:4055..4657- (Malus x domestica
ATGCATCGACATCTCCTCGGAACAGCGCTGAACACGGCGGCGCCGTCGTC
CAATGGGAACAGAACCGCCGATTCGTTCATTAACGAGGCCAACTTCGACA
CCAACATGGTGATCATATTGGCGGCCTTGCTGTGTGCTCTGATATGCGCG
CTTGGTCTCAACTCGATCGTCCGCTGCGCCCTCCGCTGCAGCCATAGGTT
CGTTCTCGAGACGCCGGAGCAGGCGGCAGCGCGGTTGGCCGCCACCGGCT
TGAAGAAGAGCCATTTGAGGCAAATCCCAATTGCGGTGTACGGCTCCGGC
GTGAATATTCCGGCCACCGAATGCCCAATCTGTCTTACGGAGTTCGAAGA
CGGAGAAAAAGTTCGAGTCTTGCCAAAATGCAATCACGGATTCCATGTGA
GGTGCATAGACACGTGGTTTCTGTCGCACTCCTCGTGTCCGAATTGTCGG
CACTCGCTGCTGAGTACGAGTTCWRCGGCAGCTGCCGTTGCTGCAGATTC
AAGTGGAGAAGCTGCGGCGGCGGAGGAGGAGTCACCGGCAGCGGCCAATG
AGTCCAGCCAGCAAGGTGGCAGAGTAGTGGTAGTGGTCGAGCAGGGGAGT
TAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding