MDP0000505478, MDP0000505478 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000505478
Unique Name	MDP0000505478
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1332

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr14	chromosome	chr14:13264837..13266168 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC009141.342	contig	MDC009141.342:29798..31129 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000505478_exon_1	MDP0000505478_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000505478	MDP0000505478	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 31..421 score: 9.1
None	No IPR available	COIL	coil	coiled-coil	coord: 137..158 score
None	No IPR available	SEG	seg	seg	coord: 408..423 score
None	No IPR available	SEG	seg	seg	coord: 75..89 score
None	No IPR available	SEG	seg	seg	coord: 10..24 score
None	No IPR available	SEG	seg	seg	coord: 31..43 score
None	No IPR available	SEG	seg	seg	coord: 23..29 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr14:13264837..13266168+
mRNA from alignment at MDC009141.342:29798..31129+
coding sequence from alignment at MDC009141.342:29798..31129+

mRNA sequence

>MDP0000505478 ID=MDP0000505478; Name=MDP0000505478; organism=Malus x domestica; type=mRNA; length=1332bp
ATGGAGGAGGTTCGGATCAGTTCTAAGGAGGAGAGATTCGAAAAACTGAG
GAAAGCACCAGAAGCTCCAGATTATAGCTCAAACCCAAAGATCCAAAAGG
TACCCTTCATGCTCCGCAAGCCCAAAACTTCCGAGAAGTATTACGAGCCG
AGGGCCGTAGCAATAGGCCCTTTCCATCATGGCAATCCAAGGTGCGAGCT
GGCTGAGGAATTCAAGCTTATGTTGACAAAAAGATTTCTTAAATACACTA
GCCAAACAGTTGAAGCTCTGCATCAGAAGGTTGAGAAGAAGATCAAAGAA
CTACGGGAATGTTACGCCGAGGAAGCGACACAGACCTATGATGATGAGAC
CCTCGCTTGGATGTTGTTCTTAGATGGGTGTTCAACCTTACAATTCATAC
ACTCCTTTGTGGATGAAGAGTTGGAAGAATTGTCGATCAAAAGGGACCAG
ATAGCCTTTGCACAACAGGACTTGTTCTTGCTAGAGAACCAAGTCCCTTA
TCAAGTCCTCGAGCTGTTGATGAGCTCAAGCAACAAATGCGAGGATTTGA
AGAAGGCGATCGAGACTTACGTTCAGGCAAACATTGGTGCACCTGGAAAG
AAGCAATCGGAAAAGAAAGTAGCAATAACCATGGAAAAAGAGAAAGAGCC
CGCTCATCAAGAGAAAGAGCCCGCTCATCTTCTTGACCTTCTCCGAACAA
GAATGCTAGGTCCACCAAAAAATCCCGATAAGCGAGCTAAAGACCACTCC
GTACAATCTTTTCGCAATGTACAAGAGCTTGATGCAGCCGGGATCCATTT
TAAGCTTAGTAACAGTAGCCTTTTGGGGGACATATCTTTTGTTTCTCATT
CCTTTGCAGGATACCTTAGTCTTCCTGCAATATCAGTAGATGACTCAACA
GGGCCTAAGTTCATGAATCTGATAGCATATGAAATGTGTCCTGATTTCCA
GAATGATTTTGCGGTCACCTCTTACATCAGCTTCCTTGATGCACTCATTG
ATCATGCAGATGATGTTAAGGAGCTAAGGTCAGCCGGTGTACTTTACAAC
TTACTGGGGAGTGATAAGGAGGTGGCTAAGCTCTTTAATGAGATTGGCAC
TGACTTGGTCCCTAACACTGACATATACCACGATGTCAAAGCCGAAATAG
AAAAACACTACAAAACCAAGTGGAAGACCTGGATGTCTCAATTCTGTCAC
GATCATTTCAGAAGCCCCTGGACTTTCCTGGCTTTCGTGGGTGTTCTAGC
AGCACTTGGGTTAACCGGCATCCAGACTTGGTTTGCAGTCTATTCTCCAT
CGTCTCCCTGTGATGTCGTTGCCAGAACTTGA

protein sequence of MDP0000505478

>MDP0000505478 ID=MDP0000505478; Name=MDP0000505478; organism=Malus x domestica; type=polypeptide; length=444bp
MEEVRISSKEERFEKLRKAPEAPDYSSNPKIQKVPFMLRKPKTSEKYYEP
RAVAIGPFHHGNPRCELAEEFKLMLTKRFLKYTSQTVEALHQKVEKKIKE
LRECYAEEATQTYDDETLAWMLFLDGCSTLQFIHSFVDEELEELSIKRDQ
IAFAQQDLFLLENQVPYQVLELLMSSSNKCEDLKKAIETYVQANIGAPGK
KQSEKKVAITMEKEKEPAHQEKEPAHLLDLLRTRMLGPPKNPDKRAKDHS
VQSFRNVQELDAAGIHFKLSNSSLLGDISFVSHSFAGYLSLPAISVDDST
GPKFMNLIAYEMCPDFQNDFAVTSYISFLDALIDHADDVKELRSAGVLYN
LLGSDKEVAKLFNEIGTDLVPNTDIYHDVKAEIEKHYKTKWKTWMSQFCH
DHFRSPWTFLAFVGVLAALGLTGIQTWFAVYSPSSPCDVVART*

mRNA from alignment at chr14:13264837..13266168+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000505478 ID=MDP0000505478; Name=MDP0000505478; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr14:13264837..13266168+ (Malus x domestica

mRNA from alignment at MDC009141.342:29798..31129+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000505478 ID=MDP0000505478; Name=MDP0000505478; organism=Malus x domestica; type=mRNA; length=1332bp; location=Sequence derived from: MDC009141.342:29798..31129+ (Malus x domestica
ATGGAGGAGGTTCGGATCAGTTCTAAGGAGGAGAGATTCGAAAAACTGAG
GAAAGCACCAGAAGCTCCAGATTATAGCTCAAACCCAAAGATCCAAAAGG
TACCCTTCATGCTCCGCAAGCCCAAAACTTCCGAGAAGTATTACGAGCCG
AGGGCCGTAGCAATAGGCCCTTTCCATCATGGCAATCCAAGGTGCGAGCT
GGCTGAGGAATTCAAGCTTATGTTGACAAAAAGATTTCTTAAATACACTA
GCCAAACAGTTGAAGCTCTGCATCAGAAGGTTGAGAAGAAGATCAAAGAA
CTACGGGAATGTTACGCCGAGGAAGCGACACAGACCTATGATGATGAGAC
CCTCGCTTGGATGTTGTTCTTAGATGGGTGTTCAACCTTACAATTCATAC
ACTCCTTTGTGGATGAAGAGTTGGAAGAATTGTCGATCAAAAGGGACCAG
ATAGCCTTTGCACAACAGGACTTGTTCTTGCTAGAGAACCAAGTCCCTTA
TCAAGTCCTCGAGCTGTTGATGAGCTCAAGCAACAAATGCGAGGATTTGA
AGAAGGCGATCGAGACTTACGTTCAGGCAAACATTGGTGCACCTGGAAAG
AAGCAATCGGAAAAGAAAGTAGCAATAACCATGGAAAAAGAGAAAGAGCC
CGCTCATCAAGAGAAAGAGCCCGCTCATCTTCTTGACCTTCTCCGAACAA
GAATGCTAGGTCCACCAAAAAATCCCGATAAGCGAGCTAAAGACCACTCC
GTACAATCTTTTCGCAATGTACAAGAGCTTGATGCAGCCGGGATCCATTT
TAAGCTTAGTAACAGTAGCCTTTTGGGGGACATATCTTTTGTTTCTCATT
CCTTTGCAGGATACCTTAGTCTTCCTGCAATATCAGTAGATGACTCAACA
GGGCCTAAGTTCATGAATCTGATAGCATATGAAATGTGTCCTGATTTCCA
GAATGATTTTGCGGTCACCTCTTACATCAGCTTCCTTGATGCACTCATTG
ATCATGCAGATGATGTTAAGGAGCTAAGGTCAGCCGGTGTACTTTACAAC
TTACTGGGGAGTGATAAGGAGGTGGCTAAGCTCTTTAATGAGATTGGCAC
TGACTTGGTCCCTAACACTGACATATACCACGATGTCAAAGCCGAAATAG
AAAAACACTACAAAACCAAGTGGAAGACCTGGATGTCTCAATTCTGTCAC
GATCATTTCAGAAGCCCCTGGACTTTCCTGGCTTTCGTGGGTGTTCTAGC
AGCACTTGGGTTAACCGGCATCCAGACTTGGTTTGCAGTCTATTCTCCAT
CGTCTCCCTGTGATGTCGTTGCCAGAACTTGA

Coding sequence (CDS) from alignment at MDC009141.342:29798..31129+

>MDP0000505478 ID=MDP0000505478; Name=MDP0000505478; organism=Malus x domestica; type=CDS; length=1332bp; location=Sequence derived from: MDC009141.342:29798..31129+ (Malus x domestica
ATGGAGGAGGTTCGGATCAGTTCTAAGGAGGAGAGATTCGAAAAACTGAG
GAAAGCACCAGAAGCTCCAGATTATAGCTCAAACCCAAAGATCCAAAAGG
TACCCTTCATGCTCCGCAAGCCCAAAACTTCCGAGAAGTATTACGAGCCG
AGGGCCGTAGCAATAGGCCCTTTCCATCATGGCAATCCAAGGTGCGAGCT
GGCTGAGGAATTCAAGCTTATGTTGACAAAAAGATTTCTTAAATACACTA
GCCAAACAGTTGAAGCTCTGCATCAGAAGGTTGAGAAGAAGATCAAAGAA
CTACGGGAATGTTACGCCGAGGAAGCGACACAGACCTATGATGATGAGAC
CCTCGCTTGGATGTTGTTCTTAGATGGGTGTTCAACCTTACAATTCATAC
ACTCCTTTGTGGATGAAGAGTTGGAAGAATTGTCGATCAAAAGGGACCAG
ATAGCCTTTGCACAACAGGACTTGTTCTTGCTAGAGAACCAAGTCCCTTA
TCAAGTCCTCGAGCTGTTGATGAGCTCAAGCAACAAATGCGAGGATTTGA
AGAAGGCGATCGAGACTTACGTTCAGGCAAACATTGGTGCACCTGGAAAG
AAGCAATCGGAAAAGAAAGTAGCAATAACCATGGAAAAAGAGAAAGAGCC
CGCTCATCAAGAGAAAGAGCCCGCTCATCTTCTTGACCTTCTCCGAACAA
GAATGCTAGGTCCACCAAAAAATCCCGATAAGCGAGCTAAAGACCACTCC
GTACAATCTTTTCGCAATGTACAAGAGCTTGATGCAGCCGGGATCCATTT
TAAGCTTAGTAACAGTAGCCTTTTGGGGGACATATCTTTTGTTTCTCATT
CCTTTGCAGGATACCTTAGTCTTCCTGCAATATCAGTAGATGACTCAACA
GGGCCTAAGTTCATGAATCTGATAGCATATGAAATGTGTCCTGATTTCCA
GAATGATTTTGCGGTCACCTCTTACATCAGCTTCCTTGATGCACTCATTG
ATCATGCAGATGATGTTAAGGAGCTAAGGTCAGCCGGTGTACTTTACAAC
TTACTGGGGAGTGATAAGGAGGTGGCTAAGCTCTTTAATGAGATTGGCAC
TGACTTGGTCCCTAACACTGACATATACCACGATGTCAAAGCCGAAATAG
AAAAACACTACAAAACCAAGTGGAAGACCTGGATGTCTCAATTCTGTCAC
GATCATTTCAGAAGCCCCTGGACTTTCCTGGCTTTCGTGGGTGTTCTAGC
AGCACTTGGGTTAACCGGCATCCAGACTTGGTTTGCAGTCTATTCTCCAT
CGTCTCCCTGTGATGTCGTTGCCAGAACTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln