MDP0000578672, MDP0000578672 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000578672
Unique Name	MDP0000578672
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	6068

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr11	chromosome	chr11:32012507..32018574 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC021893.200	contig	MDC021893.200:4076..10143 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000578672_exon_1	MDP0000578672_exon_1	Malus x domestica	CDS
MDP0000578672_exon_2	MDP0000578672_exon_2	Malus x domestica	CDS
MDP0000578672_exon_3	MDP0000578672_exon_3	Malus x domestica	CDS

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011684	KIP1-like	PFAM	PF07765	KIP1	coord: 14..87 score: 1.9
None	No IPR available	COIL	coil	coiled-coil	coord: 228..249 score: NAcoord: 256..272 score: NAcoord: 273..282 score: NAcoord: 283..305 score: NAcoord: 312..354 score: NAcoord: 361..405 score: NAcoord: 406..425 score: NAcoord: 426..433 score: NAcoord: 434..436 score: NAcoord: 437..446 score: NAcoord: 447..452 score: NAcoord: 473..501 score: NAcoord: 550..578 score: NAcoord: 585..607 score: NAcoord: 608..634 score: NAcoord: 655..683 score: NAcoord: 686..690 score: NAcoord: 691..728 score: NAcoord: 742..743 score: NAcoord: 744..763 score: NAcoord: 812..822 score: NAcoord: 823..840 score: NAcoord: 907..913 score: NAcoord: 914..923 score: NAcoord: 924..928 score: NAcoord: 1017..1034 score: NAcoord: 1035..1053 score: NAcoord: 1054..1076 score: NAcoord: 1077..1080 score: NAcoord: 1164..1234 score: NAcoord: 1248..1269 score: NAcoord: 1276..1297 score: NAcoord: 1304..1339 score: NAcoord: 1471..1492 score: NAcoord: 1631..1652 score: NAcoord: 1659..1680 score
None	No IPR available	PANTHER	PTHR13140	FAMILY NOT NAMED	coord: 1..1790 score: 6.9
None	No IPR available	PANTHER	PTHR13140:SF97	SUBFAMILY NOT NAMED	coord: 1..1790 score: 6.9
None	No IPR available	SEG	seg	seg	coord: 238..254 score: NAcoord: 354..366 score: NAcoord: 409..422 score: NAcoord: 695..708 score: NAcoord: 776..787 score: NAcoord: 821..835 score: NAcoord: 1062..1076 score: NAcoord: 1202..1215 score: NAcoord: 1727..1739 score
None	No IPR available	SEG	seg	seg	coord: 55..66 score
None	No IPR available	SEG	seg	seg	coord: 8..19 score
None	No IPR available	SEG	seg	seg	coord: 36..53 score
None	No IPR available	SEG	seg	seg	coord: 48..52 score: NAcoord: 58..74 score
None	No IPR available	SEG	seg	seg	coord: 26..36 score
None	No IPR available	SEG	seg	seg	coord: 17..34 score
None	No IPR available	SEG	seg	seg	coord: 9..20 score: NAcoord: 66..86 score
None	No IPR available	SEG	seg	seg	coord: 38..52 score: NAcoord: 55..69 score: NAcoord: 114..132 score: NAcoord: 146..161 score
None	No IPR available	SEG	seg	seg	coord: 20..40 score: NAcoord: 79..102 score
None	No IPR available	SEG	seg	seg	coord: 2..19 score: NAcoord: 22..37 score
None	No IPR available	SEG	seg	seg	coord: 42..54 score

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at chr11:32012507..32018574+
mRNA from alignment at MDC021893.200:4076..10143+
coding sequence from alignment at MDC021893.200:4076..10143+

mRNA sequence

>MDP0000578672 ID=MDP0000578672; Name=MDP0000578672; organism=Malus x domestica; type=mRNA; length=6068bp
ATGGCTACCGCGTCGCAGGCAGACTCTAGACGCAAGTATTCTTGGTGGTG
GGACAGCCACATAAGCCCGAAGAATTCAAGATGGCTTCAGGAAAATCTTA
CAGGTATACATCATATAACTGGTTTGGTTTGCCGTGTTTCTCATATATGT
GGAGTGAAGCAATGCTCTCTCGCCGGACATCATTAAGTTTTTTTATCATG
TCAACTGCATTGCATATTGTGACACGATTTTTACTTCGTCCTATCAAGAA
ATGTTCATAATGAATAACGAATTCTCGTTTCCTAAACTGTTACATCATCA
AATATGGAATATTGGATGGCTAAGAAGTGGAACTCGGACTTTATTTAAGT
TAGTTTGAATAGTGTAAATATGTATGTTGGTAGATTCCCAATTTCTGTTG
TTGACTGCTCGATGAGACGTCATTGTGGTAGTACCGGGCCTGTAAACTGC
AGTGATCCTGATTTGTCAACATATTGTTCTCTCTCCCTCCGCCTCTCTTC
TATGTATTAGATATATATAGAGTTAATTATGTTTTAACTTKTTGAACAGA
TATGGATGCCAAAGTCAAACACATGATCAAGCTCATTGAATTGGATGCCG
ATTCCTTTGCTAGGAGGGCAGAGATGTACTATAAACAGCGCCCAGAATTA
ATGAAATTGGTAGAAGAGTTCTATCGAGCATACCGTGCATTAGCTGAGAG
ATATGATCATGCAACTGGGGCGCTGCGCCAGGCTCATCGAACCATGGCAG
AAGCATTTCCCAACCAAGTTCCCTTTGCAATGGGAGATGATTCACCTGCA
GGTTCCTCTGCTAGTGAGGCTGATCCCCGTACACCTGAGATGCCACATCC
AATGCGGGCATTCTTAGACCTTGATGAAATGCCAAAAGATGCTCCGGGAA
TCTCCTCATCCCATTTCCTTGGTGTAAAAAAGAATGGAGCTTATACCGAT
GAATCTGACTCTGGAACAAGCAGAATGGGCTTGAAACAGCTGAATGATCT
ATTTGGGTCTGGAGAAGGAAGGGCGAAAAAAGGTCTCAATTTTCCTGATG
AAGAAGAAAAAGACCGCAGCATGCAGGACAATGAGACCCATAACGTCAAG
GCTCGATCATTGTCCGAGTCTGATCGACTGGGTAAAGCAGAGACAGAAAT
TTCAAACTTGAAGGTGGCCCTTGCTAAATTAGAAGCCGAAAAGGAAGCTG
GCCTACTTCAGTACCAACAGTGTTTAGAGAGGTTAAATAATCTGGAGTCT
GAAGTCGCTYGTGCACATGAGGATTCCAGGGGACTGAACRAGCGAGCCAG
TAAAGCTGAAGCTGAAGTTCAAGCTTCGAAGGAAGCACTTGCTAAATTAG
AGTCTGAAAGGGATGCTAGCCTTCTGCAGTATCAGCAGTGTTTGGAGAAA
ATCACTAATCTGGAGGACAGTATCTCTTGTGCCCAAAAGGATGCTGCAGA
GCTCAATGATCGCGCGAGTAAAGTTGAAACTGAAGCTGGAACTCTAAAGC
AAGATCTTGCAAAGGTCGTAGMTGAGAAAGAAGCTGCGCTTGCACAATAT
CAACAATGTCTAGAAATGATATCAAATCTGGAGGAAAAAATACTGCATAT
TGAGGAGGATACAAGAAGAATTAATGAGCGAGCTGTTAAAGCCGAAGGTG
AAGTTGAAAMCTTGAAGCAAGCAATTGCCAAGTTAAATGAAGAGAAGGAA
GCTGCTGCTCTCCAGTACCASCAGTGCTTGGAAACCATATCTRCTCTGGA
GYATAAGATAGCTAGTGCYCAAGAGGAGGCCCRACGGCTACACTCTGAAA
TAGATGATGGGATTGCAAAGTTAAAGGGTTCTGAAGAAAAGTGTATTCTG
CTGGCACAATCAAATCAGACGCTCCAATCTGAGTTGGAGTCTTTGGTGCA
GAAAATGGAATCTCAGGGTGAAGAACTGACTGAGAAGCAGAAGGAGTTGG
GCAGACTCTGGACTTCCATACGMGAAGAGCGTTTGCGATTCWTGGAGGCT
GAAACTGCTTTCCAGACACTGCAGCATTTGCATTCTCAATCCCAGGAGGA
ACTTAGATCTATGTATTCTGAACTTCACAATGGAGCTTTAATTATGAAGG
ACATGGAAACGCGTAATCAGGTTTTGGAGGACGAAGTCCAGAATTCGAAG
GAGGAAAACAAGAGGCTGAGTGAGTTCAATCTGTCTGCATCCATGTCGAT
AAAAAATCTGCAAGATGAGATCTTAATCTTGAGGGAGACGATCAGAAAAC
TTGAAGAGGAACTCGKACTCCGAGTAGACCAAAGAAAYGCTCTCCAGCAA
GAGATATACTGCCTGAAAGAGGAACTCAATGGCTTGAACAAGAAACACCA
AGTTATGCTAGAGCAGGTAGAGTCAGTTGGCTTGAATCCAGAGTGCCTTG
CGTCATCTGTGAAGGAACTGCAGGGTGAAAAATCACAGCTAGAACAGATG
TGTGAGGCTGATAGAAGTGAGAAAGCGGCACTGTTAGAAAAGTTGGAAAT
CATGCAGAAACTTMTGGAGAAAAATGTTCTTTTGGAGAATTCCCTTTCKG
ATTTGAACCTTGAGTTAGAAGGTGTTAGAGGGAAGGTAAAGGAGTTGGAA
GAATCATGTCAATCTCATCTRGAAGAAAAAGGTACAATTGCTGCTGAAAA
TGCCGCCCTACTTTCCCAGTTAMAAATTATGACCGAGAACTTGAAGAAAT
CATCGGAGAATAACAAAATTTTGGAGAATTCCCTTTGTGATGCAAATGCT
GAACTTGAAGGCTTGAGGGTAAAATCAAAGAGCTTAGAAGAGTCCTGTCT
ATTGCTTGATAACGAGAAGTCTGGTCTGACCAAGGAGAGAGAAAATGTAG
TTTCTGAGTTGGGCGCTACTCAGCRAAGACTGGCAGGTCTGGAAAAAGGA
TATACAGAARTAGAAGAGAAACTCTCTGCTCTTGAGAAAGARAGAGAATC
CGCACTTCGTAAAGTGGAAGAGCTACATGTTTTCTTRGATTCTGAGAAAC
AAAAACATGCCAGTTTTGTTCAGTTGAGTGAAACCCAGATGGCTGGTATG
GGATTGCAGATCTCTCGTCTCCAAGCAGAAGGCATGTGCATGAAGAAAGW
ATATGAAGTGGAACAAGACAAAGCTGTGAACGCGCAGATTGAAATCTTTG
TCTTGCAGAAATGCATAAAAGATCTGGAAGAAAAKATCTTGTCCCTCATG
GTTGAGCGTCAAAAKCTGTTGGAGGCATCCAAAATGTCAGAGAAACAGRT
TTCTGACCTAGAGCATGGAAATCTTGAGCAACAGGTGGAGATTAAATCTT
TCCTTTTGCAAACGAAAGTACTGAGAATGGGRCTGTATCAGGTGTTGAAG
ACTCTTGACGTGGAGGCAAACCTCAGTTGTGCAGGAGAGGTTGAGCAAGA
CGAAACACTTCTTAACAACATTCTTGTCAAACTTCAAGAGACGCAAAATT
CTCTCTCTGAAACTTGTGATCAAAATCAGCAGTTGGTTATTGAGAAGTCR
GTTCTCATAGAAATGATTGACCAACTAAAACTAGAGGCAGCAAATCWTAT
GAGAGAAAGAAACACCCTGGACGGAGAGTTCAAGAATCAGTCTGAGAAGC
TYRTGGTGTTACAGAGTGGGGCCCAAAGACTTGAGGAGAAGAATGAAGAA
TTGAAGTTGAAAGTAGTGGAGRGAGACCACAGAGAGCAAGTGTTGAGGAC
TGAAATAGATGATCTGCATGAGCAGTTCTTGGACTTGCARAGTGCATACA
ACGATGTATTGGAAGAGAATGGCAAGATGCTTGTAGAGAAAGGAGCTTTG
ACAAAGATGGTATCGAATTTGTGGGAAGAGAAYCGTGACCTCGAAGAGGA
GAAATGTGTCATGTTTGGTGAAACGATATATCACAATAACTTTTCACTTG
TTCTCAAAGATTTTATTTCAAGAAAGCTGCAGGAACTGGAAGAGCTCACT
GACTATTTAGATAAACTTCATCTTGGAAAGAATGACCTGGAAGATAAGGT
AAGGATGTTGGAGGGGAAGTTAGAAGATACACGGATGGACAACGTACAGC
TCAAGGAGTCATTGAATAAGTCCGAGAATGAGCTGGAGTTAGTTAAATCT
GTTAATGATCAATTGAATGGTGAAATYGCAAATGCAAAGGATGCGTCGTA
CCATAAAGAAAATGAGCTTTTGGAAGTACATCAGGCCATCAGTGTGCTAC
AGAATGAGAGGCAAGAGTTGCATGCGTTAGTGGAGGACATGAATGGTAAG
TATGGTGAGGCYRAGGTGGTACTACAAGATCAAGAGAAGCAAATTCTCAA
ACTCTCTGCAGACAATGAACTTCATATCAAAGAGACTGGCAACCTTTGTG
TAGTGAATCAGGAGTTGGAGTCAGAAGTGCAGAAAATGCAGCAAAAAGCT
GAAAAAACTAAAATCAAAGAGGAAGGTTTGATCAATGAACTGCAAAAGGA
AAGACAAGAGATAGAAATGTGGTTGTTTCAGGCTGCCACATTATTTGGCG
AACTGCAGGGTTCCAACATTCGTGAAACATTGTTTGAAGGAAAGATTCGC
GAGCTCATTGAAGCATGTCAGATCCTCGAAGACAGAAGCAATTCCAGAGG
CATCGAGAACAAAATTTTGAAAGAAAGAGTTTGCGCATTGGAAGACGAAA
ATGGAGGGCTACAAGCTCAGTTGGCTGCATATATTCCAGCTGTCATCTCT
TTGAAGGAGTGTATAACATCGCTTGAGAAGCATATACTCGCAGACACCGG
TTCTCATAAACTTGACACTGAAGAATCAAAGGTAACTTTTCATGTCTGTT
TATATATTACCTATGGAAATTGAAAGTTTCAATTGTCACGAGCCATTATT
TGAACTCATGCTTTATCATCAACATTCAAGGTTTATCTCTGGCAAGTTTT
ACGGAAAGTAAGCCGGTTTCTGTCTAAAGCTTATTTGGCTTAAGACATGA
TGACTTCGTTTTATAGTTCAATGGTGGATATCATTTGAAATAACATATTT
GTATCCCACTTTATCCAGGATGCCCTTCTGCATGCTGAAAGCCCTCAAAT
GGATGGAGATCAAACAGCCACAGTATCASATGGTGTTTTGGACTTGCAGG
ATTTACAAAGAAGACTTGAAGCTATTGAAAAGGCAGTGGTGGAAAAGGAA
GGTCATGTTTCTGTAAATCAGGTTCGTGACACTATGAAGAAGCGTGAAAT
ATCTGGATCAGGGAATGAAGTTCTGACAAAAGACATCGTTCTTGATCAGA
TATCGGAGTGTTCATCCTATGGGATAAGCAGAAGAGAAACCATAGAGCCT
GATGCTCAGATGCTTGAGTTGTGGGAGACCAGTGACCAGGATGGCAGCAT
TGATTTGACAGTTGGCAACTCCCAGAAGGCAGGCGCTGTACCAACTGACC
ACAGTCAGATGGAGGCAGTAAAGGAGCACAATAAAGGACATCCCTCTTCT
GAATCATTGGTTGAGAAAGAATTGGGTATTAACAAATTAGAACTCTCTAG
GAGATTTACGCAGCCCCGTCAAGAAGGGAACAAGAGAAGCATCCTAGAAA
GACTTGATTCCGATGTGCAAAAGTTGACAAACCTTCAAATTACTGTGGAA
GACCTGAAGACAAAGGTGGAGATTACTGAGAAGAGCAAAAAGGGCAATAA
TATGGAACTTGATAGCGTAAAGGGGCAGCTGGAAGAAGCCAAAGAGGCYA
TTACGAAGTTGTTTGATGCCAATCAAATGTTGATGAAGAGCGTTGAAGAT
GATCCCCCGTCCTCTGCCGGATCTTCTGGGGAAGTACCAGATGAAAGTGG
GAGCGTGAGAAGGAGGAGACTTTCTGAACAAGCAAAAAGAGGGTCGGAAA
ACATTGGGCGGTTGCAGTTACAGGTTCAGAAACTGCAGTTTCTTCTTCTG
AAAATYGATGGCGAAAAAGACAGCAAAGGATCAGCTAGAATCATCGAGCG
GAAGAAAAGYGTTCTTCTTCGCGACTACCTCTATGGCGTRGGAAAACCCG
TCAACCAAGGGAAACGGAAGAAATCGCCCTTCTGTGCATGCATACAGCCC
CCAACCAAGGGAGATTAA

mRNA from alignment at chr11:32012507..32018574+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000578672 ID=MDP0000578672; Name=MDP0000578672; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr11:32012507..32018574+ (Malus x domestica

mRNA from alignment at MDC021893.200:4076..10143+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000578672 ID=MDP0000578672; Name=MDP0000578672; organism=Malus x domestica; type=mRNA; length=6068bp; location=Sequence derived from: MDC021893.200:4076..10143+ (Malus x domestica
ATGGCTACCGCGTCGCAGGCAGACTCTAGACGCAAGTATTCTTGGTGGTG
GGACAGCCACATAAGCCCGAAGAATTCAAGATGGCTTCAGGAAAATCTTA
CAGGTATACATCATATAACTGGTTTGGTTTGCCGTGTTTCTCATATATGT
GGAGTGAAGCAATGCTCTCTCGCCGGACATCATTAAGTTTTTTTATCATG
TCAACTGCATTGCATATTGTGACACGATTTTTACTTCGTCCTATCAAGAA
ATGTTCATAATGAATAACGAATTCTCGTTTCCTAAACTGTTACATCATCA
AATATGGAATATTGGATGGCTAAGAAGTGGAACTCGGACTTTATTTAAGT
TAGTTTGAATAGTGTAAATATGTATGTTGGTAGATTCCCAATTTCTGTTG
TTGACTGCTCGATGAGACGTCATTGTGGTAGTACCGGGCCTGTAAACTGC
AGTGATCCTGATTTGTCAACATATTGTTCTCTCTCCCTCCGCCTCTCTTC
TATGTATTAGATATATATAGAGTTAATTATGTTTTAACTTKTTGAACAGA
TATGGATGCCAAAGTCAAACACATGATCAAGCTCATTGAATTGGATGCCG
ATTCCTTTGCTAGGAGGGCAGAGATGTACTATAAACAGCGCCCAGAATTA
ATGAAATTGGTAGAAGAGTTCTATCGAGCATACCGTGCATTAGCTGAGAG
ATATGATCATGCAACTGGGGCGCTGCGCCAGGCTCATCGAACCATGGCAG
AAGCATTTCCCAACCAAGTTCCCTTTGCAATGGGAGATGATTCACCTGCA
GGTTCCTCTGCTAGTGAGGCTGATCCCCGTACACCTGAGATGCCACATCC
AATGCGGGCATTCTTAGACCTTGATGAAATGCCAAAAGATGCTCCGGGAA
TCTCCTCATCCCATTTCCTTGGTGTAAAAAAGAATGGAGCTTATACCGAT
GAATCTGACTCTGGAACAAGCAGAATGGGCTTGAAACAGCTGAATGATCT
ATTTGGGTCTGGAGAAGGAAGGGCGAAAAAAGGTCTCAATTTTCCTGATG
AAGAAGAAAAAGACCGCAGCATGCAGGACAATGAGACCCATAACGTCAAG
GCTCGATCATTGTCCGAGTCTGATCGACTGGGTAAAGCAGAGACAGAAAT
TTCAAACTTGAAGGTGGCCCTTGCTAAATTAGAAGCCGAAAAGGAAGCTG
GCCTACTTCAGTACCAACAGTGTTTAGAGAGGTTAAATAATCTGGAGTCT
GAAGTCGCTYGTGCACATGAGGATTCCAGGGGACTGAACRAGCGAGCCAG
TAAAGCTGAAGCTGAAGTTCAAGCTTCGAAGGAAGCACTTGCTAAATTAG
AGTCTGAAAGGGATGCTAGCCTTCTGCAGTATCAGCAGTGTTTGGAGAAA
ATCACTAATCTGGAGGACAGTATCTCTTGTGCCCAAAAGGATGCTGCAGA
GCTCAATGATCGCGCGAGTAAAGTTGAAACTGAAGCTGGAACTCTAAAGC
AAGATCTTGCAAAGGTCGTAGMTGAGAAAGAAGCTGCGCTTGCACAATAT
CAACAATGTCTAGAAATGATATCAAATCTGGAGGAAAAAATACTGCATAT
TGAGGAGGATACAAGAAGAATTAATGAGCGAGCTGTTAAAGCCGAAGGTG
AAGTTGAAAMCTTGAAGCAAGCAATTGCCAAGTTAAATGAAGAGAAGGAA
GCTGCTGCTCTCCAGTACCASCAGTGCTTGGAAACCATATCTRCTCTGGA
GYATAAGATAGCTAGTGCYCAAGAGGAGGCCCRACGGCTACACTCTGAAA
TAGATGATGGGATTGCAAAGTTAAAGGGTTCTGAAGAAAAGTGTATTCTG
CTGGCACAATCAAATCAGACGCTCCAATCTGAGTTGGAGTCTTTGGTGCA
GAAAATGGAATCTCAGGGTGAAGAACTGACTGAGAAGCAGAAGGAGTTGG
GCAGACTCTGGACTTCCATACGMGAAGAGCGTTTGCGATTCWTGGAGGCT
GAAACTGCTTTCCAGACACTGCAGCATTTGCATTCTCAATCCCAGGAGGA
ACTTAGATCTATGTATTCTGAACTTCACAATGGAGCTTTAATTATGAAGG
ACATGGAAACGCGTAATCAGGTTTTGGAGGACGAAGTCCAGAATTCGAAG
GAGGAAAACAAGAGGCTGAGTGAGTTCAATCTGTCTGCATCCATGTCGAT
AAAAAATCTGCAAGATGAGATCTTAATCTTGAGGGAGACGATCAGAAAAC
TTGAAGAGGAACTCGKACTCCGAGTAGACCAAAGAAAYGCTCTCCAGCAA
GAGATATACTGCCTGAAAGAGGAACTCAATGGCTTGAACAAGAAACACCA
AGTTATGCTAGAGCAGGTAGAGTCAGTTGGCTTGAATCCAGAGTGCCTTG
CGTCATCTGTGAAGGAACTGCAGGGTGAAAAATCACAGCTAGAACAGATG
TGTGAGGCTGATAGAAGTGAGAAAGCGGCACTGTTAGAAAAGTTGGAAAT
CATGCAGAAACTTMTGGAGAAAAATGTTCTTTTGGAGAATTCCCTTTCKG
ATTTGAACCTTGAGTTAGAAGGTGTTAGAGGGAAGGTAAAGGAGTTGGAA
GAATCATGTCAATCTCATCTRGAAGAAAAAGGTACAATTGCTGCTGAAAA
TGCCGCCCTACTTTCCCAGTTAMAAATTATGACCGAGAACTTGAAGAAAT
CATCGGAGAATAACAAAATTTTGGAGAATTCCCTTTGTGATGCAAATGCT
GAACTTGAAGGCTTGAGGGTAAAATCAAAGAGCTTAGAAGAGTCCTGTCT
ATTGCTTGATAACGAGAAGTCTGGTCTGACCAAGGAGAGAGAAAATGTAG
TTTCTGAGTTGGGCGCTACTCAGCRAAGACTGGCAGGTCTGGAAAAAGGA
TATACAGAARTAGAAGAGAAACTCTCTGCTCTTGAGAAAGARAGAGAATC
CGCACTTCGTAAAGTGGAAGAGCTACATGTTTTCTTRGATTCTGAGAAAC
AAAAACATGCCAGTTTTGTTCAGTTGAGTGAAACCCAGATGGCTGGTATG
GGATTGCAGATCTCTCGTCTCCAAGCAGAAGGCATGTGCATGAAGAAAGW
ATATGAAGTGGAACAAGACAAAGCTGTGAACGCGCAGATTGAAATCTTTG
TCTTGCAGAAATGCATAAAAGATCTGGAAGAAAAKATCTTGTCCCTCATG
GTTGAGCGTCAAAAKCTGTTGGAGGCATCCAAAATGTCAGAGAAACAGRT
TTCTGACCTAGAGCATGGAAATCTTGAGCAACAGGTGGAGATTAAATCTT
TCCTTTTGCAAACGAAAGTACTGAGAATGGGRCTGTATCAGGTGTTGAAG
ACTCTTGACGTGGAGGCAAACCTCAGTTGTGCAGGAGAGGTTGAGCAAGA
CGAAACACTTCTTAACAACATTCTTGTCAAACTTCAAGAGACGCAAAATT
CTCTCTCTGAAACTTGTGATCAAAATCAGCAGTTGGTTATTGAGAAGTCR
GTTCTCATAGAAATGATTGACCAACTAAAACTAGAGGCAGCAAATCWTAT
GAGAGAAAGAAACACCCTGGACGGAGAGTTCAAGAATCAGTCTGAGAAGC
TYRTGGTGTTACAGAGTGGGGCCCAAAGACTTGAGGAGAAGAATGAAGAA
TTGAAGTTGAAAGTAGTGGAGRGAGACCACAGAGAGCAAGTGTTGAGGAC
TGAAATAGATGATCTGCATGAGCAGTTCTTGGACTTGCARAGTGCATACA
ACGATGTATTGGAAGAGAATGGCAAGATGCTTGTAGAGAAAGGAGCTTTG
ACAAAGATGGTATCGAATTTGTGGGAAGAGAAYCGTGACCTCGAAGAGGA
GAAATGTGTCATGTTTGGTGAAACGATATATCACAATAACTTTTCACTTG
TTCTCAAAGATTTTATTTCAAGAAAGCTGCAGGAACTGGAAGAGCTCACT
GACTATTTAGATAAACTTCATCTTGGAAAGAATGACCTGGAAGATAAGGT
AAGGATGTTGGAGGGGAAGTTAGAAGATACACGGATGGACAACGTACAGC
TCAAGGAGTCATTGAATAAGTCCGAGAATGAGCTGGAGTTAGTTAAATCT
GTTAATGATCAATTGAATGGTGAAATYGCAAATGCAAAGGATGCGTCGTA
CCATAAAGAAAATGAGCTTTTGGAAGTACATCAGGCCATCAGTGTGCTAC
AGAATGAGAGGCAAGAGTTGCATGCGTTAGTGGAGGACATGAATGGTAAG
TATGGTGAGGCYRAGGTGGTACTACAAGATCAAGAGAAGCAAATTCTCAA
ACTCTCTGCAGACAATGAACTTCATATCAAAGAGACTGGCAACCTTTGTG
TAGTGAATCAGGAGTTGGAGTCAGAAGTGCAGAAAATGCAGCAAAAAGCT
GAAAAAACTAAAATCAAAGAGGAAGGTTTGATCAATGAACTGCAAAAGGA
AAGACAAGAGATAGAAATGTGGTTGTTTCAGGCTGCCACATTATTTGGCG
AACTGCAGGGTTCCAACATTCGTGAAACATTGTTTGAAGGAAAGATTCGC
GAGCTCATTGAAGCATGTCAGATCCTCGAAGACAGAAGCAATTCCAGAGG
CATCGAGAACAAAATTTTGAAAGAAAGAGTTTGCGCATTGGAAGACGAAA
ATGGAGGGCTACAAGCTCAGTTGGCTGCATATATTCCAGCTGTCATCTCT
TTGAAGGAGTGTATAACATCGCTTGAGAAGCATATACTCGCAGACACCGG
TTCTCATAAACTTGACACTGAAGAATCAAAGGTAACTTTTCATGTCTGTT
TATATATTACCTATGGAAATTGAAAGTTTCAATTGTCACGAGCCATTATT
TGAACTCATGCTTTATCATCAACATTCAAGGTTTATCTCTGGCAAGTTTT
ACGGAAAGTAAGCCGGTTTCTGTCTAAAGCTTATTTGGCTTAAGACATGA
TGACTTCGTTTTATAGTTCAATGGTGGATATCATTTGAAATAACATATTT
GTATCCCACTTTATCCAGGATGCCCTTCTGCATGCTGAAAGCCCTCAAAT
GGATGGAGATCAAACAGCCACAGTATCASATGGTGTTTTGGACTTGCAGG
ATTTACAAAGAAGACTTGAAGCTATTGAAAAGGCAGTGGTGGAAAAGGAA
GGTCATGTTTCTGTAAATCAGGTTCGTGACACTATGAAGAAGCGTGAAAT
ATCTGGATCAGGGAATGAAGTTCTGACAAAAGACATCGTTCTTGATCAGA
TATCGGAGTGTTCATCCTATGGGATAAGCAGAAGAGAAACCATAGAGCCT
GATGCTCAGATGCTTGAGTTGTGGGAGACCAGTGACCAGGATGGCAGCAT
TGATTTGACAGTTGGCAACTCCCAGAAGGCAGGCGCTGTACCAACTGACC
ACAGTCAGATGGAGGCAGTAAAGGAGCACAATAAAGGACATCCCTCTTCT
GAATCATTGGTTGAGAAAGAATTGGGTATTAACAAATTAGAACTCTCTAG
GAGATTTACGCAGCCCCGTCAAGAAGGGAACAAGAGAAGCATCCTAGAAA
GACTTGATTCCGATGTGCAAAAGTTGACAAACCTTCAAATTACTGTGGAA
GACCTGAAGACAAAGGTGGAGATTACTGAGAAGAGCAAAAAGGGCAATAA
TATGGAACTTGATAGCGTAAAGGGGCAGCTGGAAGAAGCCAAAGAGGCYA
TTACGAAGTTGTTTGATGCCAATCAAATGTTGATGAAGAGCGTTGAAGAT
GATCCCCCGTCCTCTGCCGGATCTTCTGGGGAAGTACCAGATGAAAGTGG
GAGCGTGAGAAGGAGGAGACTTTCTGAACAAGCAAAAAGAGGGTCGGAAA
ACATTGGGCGGTTGCAGTTACAGGTTCAGAAACTGCAGTTTCTTCTTCTG
AAAATYGATGGCGAAAAAGACAGCAAAGGATCAGCTAGAATCATCGAGCG
GAAGAAAAGYGTTCTTCTTCGCGACTACCTCTATGGCGTRGGAAAACCCG
TCAACCAAGGGAAACGGAAGAAATCGCCCTTCTGTGCATGCATACAGCCC
CCAACCAAGGGAGATTAA

Coding sequence (CDS) from alignment at MDC021893.200:4076..10143+

>MDP0000578672 ID=MDP0000578672; Name=MDP0000578672; organism=Malus x domestica; type=CDS; length=5385bp; location=Sequence derived from: MDC021893.200:4076..10143+ (Malus x domestica
ATGGCTACCGCGTCGCAGGCAGACTCTAGACGCAAGTATTCTTGGTGGTG
GGACAGCCACATAAGCCCGAAGAATTCAAGATGGCTTCAGGAAAATCTTA
CAGATATGGATGCCAAAGTCAAACACATGATCAAGCTCATTGAATTGGAT
GCCGATTCCTTTGCTAGGAGGGCAGAGATGTACTATAAACAGCGCCCAGA
ATTAATGAAATTGGTAGAAGAGTTCTATCGAGCATACCGTGCATTAGCTG
AGAGATATGATCATGCAACTGGGGCGCTGCGCCAGGCTCATCGAACCATG
GCAGAAGCATTTCCCAACCAAGTTCCCTTTGCAATGGGAGATGATTCACC
TGCAGGTTCCTCTGCTAGTGAGGCTGATCCCCGTACACCTGAGATGCCAC
ATCCAATGCGGGCATTCTTAGACCTTGATGAAATGCCAAAAGATGCTCCG
GGAATCTCCTCATCCCATTTCCTTGGTGTAAAAAAGAATGGAGCTTATAC
CGATGAATCTGACTCTGGAACAAGCAGAATGGGCTTGAAACAGCTGAATG
ATCTATTTGGGTCTGGAGAAGGAAGGGCGAAAAAAGGTCTCAATTTTCCT
GATGAAGAAGAAAAAGACCGCAGCATGCAGGACAATGAGACCCATAACGT
CAAGGCTCGATCATTGTCCGAGTCTGATCGACTGGGTAAAGCAGAGACAG
AAATTTCAAACTTGAAGGTGGCCCTTGCTAAATTAGAAGCCGAAAAGGAA
GCTGGCCTACTTCAGTACCAACAGTGTTTAGAGAGGTTAAATAATCTGGA
GTCTGAAGTCGCTYGTGCACATGAGGATTCCAGGGGACTGAACRAGCGAG
CCAGTAAAGCTGAAGCTGAAGTTCAAGCTTCGAAGGAAGCACTTGCTAAA
TTAGAGTCTGAAAGGGATGCTAGCCTTCTGCAGTATCAGCAGTGTTTGGA
GAAAATCACTAATCTGGAGGACAGTATCTCTTGTGCCCAAAAGGATGCTG
CAGAGCTCAATGATCGCGCGAGTAAAGTTGAAACTGAAGCTGGAACTCTA
AAGCAAGATCTTGCAAAGGTCGTAGMTGAGAAAGAAGCTGCGCTTGCACA
ATATCAACAATGTCTAGAAATGATATCAAATCTGGAGGAAAAAATACTGC
ATATTGAGGAGGATACAAGAAGAATTAATGAGCGAGCTGTTAAAGCCGAA
GGTGAAGTTGAAAMCTTGAAGCAAGCAATTGCCAAGTTAAATGAAGAGAA
GGAAGCTGCTGCTCTCCAGTACCASCAGTGCTTGGAAACCATATCTRCTC
TGGAGYATAAGATAGCTAGTGCYCAAGAGGAGGCCCRACGGCTACACTCT
GAAATAGATGATGGGATTGCAAAGTTAAAGGGTTCTGAAGAAAAGTGTAT
TCTGCTGGCACAATCAAATCAGACGCTCCAATCTGAGTTGGAGTCTTTGG
TGCAGAAAATGGAATCTCAGGGTGAAGAACTGACTGAGAAGCAGAAGGAG
TTGGGCAGACTCTGGACTTCCATACGMGAAGAGCGTTTGCGATTCWTGGA
GGCTGAAACTGCTTTCCAGACACTGCAGCATTTGCATTCTCAATCCCAGG
AGGAACTTAGATCTATGTATTCTGAACTTCACAATGGAGCTTTAATTATG
AAGGACATGGAAACGCGTAATCAGGTTTTGGAGGACGAAGTCCAGAATTC
GAAGGAGGAAAACAAGAGGCTGAGTGAGTTCAATCTGTCTGCATCCATGT
CGATAAAAAATCTGCAAGATGAGATCTTAATCTTGAGGGAGACGATCAGA
AAACTTGAAGAGGAACTCGKACTCCGAGTAGACCAAAGAAAYGCTCTCCA
GCAAGAGATATACTGCCTGAAAGAGGAACTCAATGGCTTGAACAAGAAAC
ACCAAGTTATGCTAGAGCAGGTAGAGTCAGTTGGCTTGAATCCAGAGTGC
CTTGCGTCATCTGTGAAGGAACTGCAGGGTGAAAAATCACAGCTAGAACA
GATGTGTGAGGCTGATAGAAGTGAGAAAGCGGCACTGTTAGAAAAGTTGG
AAATCATGCAGAAACTTMTGGAGAAAAATGTTCTTTTGGAGAATTCCCTT
TCKGATTTGAACCTTGAGTTAGAAGGTGTTAGAGGGAAGGTAAAGGAGTT
GGAAGAATCATGTCAATCTCATCTRGAAGAAAAAGGTACAATTGCTGCTG
AAAATGCCGCCCTACTTTCCCAGTTAMAAATTATGACCGAGAACTTGAAG
AAATCATCGGAGAATAACAAAATTTTGGAGAATTCCCTTTGTGATGCAAA
TGCTGAACTTGAAGGCTTGAGGGTAAAATCAAAGAGCTTAGAAGAGTCCT
GTCTATTGCTTGATAACGAGAAGTCTGGTCTGACCAAGGAGAGAGAAAAT
GTAGTTTCTGAGTTGGGCGCTACTCAGCRAAGACTGGCAGGTCTGGAAAA
AGGATATACAGAARTAGAAGAGAAACTCTCTGCTCTTGAGAAAGARAGAG
AATCCGCACTTCGTAAAGTGGAAGAGCTACATGTTTTCTTRGATTCTGAG
AAACAAAAACATGCCAGTTTTGTTCAGTTGAGTGAAACCCAGATGGCTGG
TATGGGATTGCAGATCTCTCGTCTCCAAGCAGAAGGCATGTGCATGAAGA
AAGWATATGAAGTGGAACAAGACAAAGCTGTGAACGCGCAGATTGAAATC
TTTGTCTTGCAGAAATGCATAAAAGATCTGGAAGAAAAKATCTTGTCCCT
CATGGTTGAGCGTCAAAAKCTGTTGGAGGCATCCAAAATGTCAGAGAAAC
AGRTTTCTGACCTAGAGCATGGAAATCTTGAGCAACAGGTGGAGATTAAA
TCTTTCCTTTTGCAAACGAAAGTACTGAGAATGGGRCTGTATCAGGTGTT
GAAGACTCTTGACGTGGAGGCAAACCTCAGTTGTGCAGGAGAGGTTGAGC
AAGACGAAACACTTCTTAACAACATTCTTGTCAAACTTCAAGAGACGCAA
AATTCTCTCTCTGAAACTTGTGATCAAAATCAGCAGTTGGTTATTGAGAA
GTCRGTTCTCATAGAAATGATTGACCAACTAAAACTAGAGGCAGCAAATC
WTATGAGAGAAAGAAACACCCTGGACGGAGAGTTCAAGAATCAGTCTGAG
AAGCTYRTGGTGTTACAGAGTGGGGCCCAAAGACTTGAGGAGAAGAATGA
AGAATTGAAGTTGAAAGTAGTGGAGRGAGACCACAGAGAGCAAGTGTTGA
GGACTGAAATAGATGATCTGCATGAGCAGTTCTTGGACTTGCARAGTGCA
TACAACGATGTATTGGAAGAGAATGGCAAGATGCTTGTAGAGAAAGGAGC
TTTGACAAAGATGGTATCGAATTTGTGGGAAGAGAAYCGTGACCTCGAAG
AGGAGAAATGTGTCATGTTTGGTGAAACGATATATCACAATAACTTTTCA
CTTGTTCTCAAAGATTTTATTTCAAGAAAGCTGCAGGAACTGGAAGAGCT
CACTGACTATTTAGATAAACTTCATCTTGGAAAGAATGACCTGGAAGATA
AGGTAAGGATGTTGGAGGGGAAGTTAGAAGATACACGGATGGACAACGTA
CAGCTCAAGGAGTCATTGAATAAGTCCGAGAATGAGCTGGAGTTAGTTAA
ATCTGTTAATGATCAATTGAATGGTGAAATYGCAAATGCAAAGGATGCGT
CGTACCATAAAGAAAATGAGCTTTTGGAAGTACATCAGGCCATCAGTGTG
CTACAGAATGAGAGGCAAGAGTTGCATGCGTTAGTGGAGGACATGAATGG
TAAGTATGGTGAGGCYRAGGTGGTACTACAAGATCAAGAGAAGCAAATTC
TCAAACTCTCTGCAGACAATGAACTTCATATCAAAGAGACTGGCAACCTT
TGTGTAGTGAATCAGGAGTTGGAGTCAGAAGTGCAGAAAATGCAGCAAAA
AGCTGAAAAAACTAAAATCAAAGAGGAAGGTTTGATCAATGAACTGCAAA
AGGAAAGACAAGAGATAGAAATGTGGTTGTTTCAGGCTGCCACATTATTT
GGCGAACTGCAGGGTTCCAACATTCGTGAAACATTGTTTGAAGGAAAGAT
TCGCGAGCTCATTGAAGCATGTCAGATCCTCGAAGACAGAAGCAATTCCA
GAGGCATCGAGAACAAAATTTTGAAAGAAAGAGTTTGCGCATTGGAAGAC
GAAAATGGAGGGCTACAAGCTCAGTTGGCTGCATATATTCCAGCTGTCAT
CTCTTTGAAGGAGTGTATAACATCGCTTGAGAAGCATATACTCGCAGACA
CCGGTTCTCATAAACTTGACACTGAAGAATCAAAGGATGCCCTTCTGCAT
GCTGAAAGCCCTCAAATGGATGGAGATCAAACAGCCACAGTATCASATGG
TGTTTTGGACTTGCAGGATTTACAAAGAAGACTTGAAGCTATTGAAAAGG
CAGTGGTGGAAAAGGAAGGTCATGTTTCTGTAAATCAGGTTCGTGACACT
ATGAAGAAGCGTGAAATATCTGGATCAGGGAATGAAGTTCTGACAAAAGA
CATCGTTCTTGATCAGATATCGGAGTGTTCATCCTATGGGATAAGCAGAA
GAGAAACCATAGAGCCTGATGCTCAGATGCTTGAGTTGTGGGAGACCAGT
GACCAGGATGGCAGCATTGATTTGACAGTTGGCAACTCCCAGAAGGCAGG
CGCTGTACCAACTGACCACAGTCAGATGGAGGCAGTAAAGGAGCACAATA
AAGGACATCCCTCTTCTGAATCATTGGTTGAGAAAGAATTGGGTATTAAC
AAATTAGAACTCTCTAGGAGATTTACGCAGCCCCGTCAAGAAGGGAACAA
GAGAAGCATCCTAGAAAGACTTGATTCCGATGTGCAAAAGTTGACAAACC
TTCAAATTACTGTGGAAGACCTGAAGACAAAGGTGGAGATTACTGAGAAG
AGCAAAAAGGGCAATAATATGGAACTTGATAGCGTAAAGGGGCAGCTGGA
AGAAGCCAAAGAGGCYATTACGAAGTTGTTTGATGCCAATCAAATGTTGA
TGAAGAGCGTTGAAGATGATCCCCCGTCCTCTGCCGGATCTTCTGGGGAA
GTACCAGATGAAAGTGGGAGCGTGAGAAGGAGGAGACTTTCTGAACAAGC
AAAAAGAGGGTCGGAAAACATTGGGCGGTTGCAGTTACAGGTTCAGAAAC
TGCAGTTTCTTCTTCTGAAAATYGATGGCGAAAAAGACAGCAAAGGATCA
GCTAGAATCATCGAGCGGAAGAAAAGYGTTCTTCTTCGCGACTACCTCTA
TGGCGTRGGAAAACCCGTCAACCAAGGGAAACGGAAGAAATCGCCCTTCT
GTGCATGCATACAGCCCCCAACCAAGGGAGATTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR011684	NAB