MDP0000768667, MDP0000768667 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000768667
Unique NameMDP0000768667
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1416
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000768667_exon_2MDP0000768667_exon_2Malus x domesticaCDS
MDP0000768667_exon_1MDP0000768667_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000768667MDP0000768667Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 42..308
score: 2.5
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 34..335
score: 4.2
IPR012334Pectin lyase foldGENE3D2.160.20.10no descriptioncoord: 39..325
score: 5.8e
NoneNo IPR availableSEGsegsegcoord: 395..403
score
NoneNo IPR availableSEGsegsegcoord: 42..57
score
NoneNo IPR availableSEGsegsegcoord: 45..50
score
NoneNo IPR availableSEGsegsegcoord: 34..44
score
NoneNo IPR availableSEGsegsegcoord: 2..7
score
NoneNo IPR availableSEGsegsegcoord: 3..18
score
NoneNo IPR availableSEGsegsegcoord: 53..64
score
NoneNo IPR availableSEGsegsegcoord: 38..49
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000768667 ID=MDP0000768667; Name=MDP0000768667; organism=Malus x domestica; type=mRNA; length=1416bp
ATGGCTTGTGGTGCTGCTAATTTCACGTGTTTATTCGTCATGGCAATACT
AATGCAAGCTTTCATGGTCGTGCTCTCTCAACCAGTCGAAGCAGAAGCAA
TCTCGAGGTCCTCGAAAAGATTCATCACCGTCGACAAATCCGGCAACGGC
GATTACACCAAAATACAGTACGCAATCGACGCCGTGCCGTCAGGTAATGC
TCAGCTTGTGTTTATTTGGGTCAAGCCTGGTGTGTACCATGAAAAAATAG
TTGTACCTTCGGACAAACCCTATATAACAGTAAGTGGCACGGGTACTGCA
CATGAGACTGTAATAATATGGAACGAATGCGGAGAGATTTTTGATGTTGC
CGTCTTTACCGTGTTGGCTACCGATTTTATAGGCCGCTTTATCACCATTC
AGGTACGATTATATACCTATGAAACAAGTTTCATATTTACTAAAGAACAG
ATTGTCGATATGTCATTGATAATGTGTCGTTACCATTGTAACCAGCAAAA
CGTACTAACATATTAACCCTAAACCAGTCACATTATCTATACATTATCGA
CAATTTCTTCACATGCATGCACATTAACGAATACTTTAATTTTCTCATTG
CAGAATACATATGGAATTGGTGCGAAAGCAGTGGCGCTTAGAGTCTCGGC
CGATAGAGCAGCATTCTACGCATGTAGAATTTTGTCTCGGCAAGATGCCT
TGTTCGACCACGTCGGCAGGCACTACTACGGACACTGCTACATTGAAGGC
GACACCGATTTAATTTTCGGAAACGCTGCTTCTTTCTTCGAGAAGTGTCA
TTTGCATTCGCTTTCGGAGCACAAAGGAGCGATCACAGCACAACGAAGGT
ATGCGCCTTCCGATCAATCGGGGTTCACCTTCTTGGCATGCGTCGTCACC
GGCGTCAAAACGGCACTACTAGGACGGCCGTGGGGTCCCTATTCGACAGT
CGTCTTTGCGTATACTTACATGTCAAACGTGATTCTTCCAGAAGGGTGGG
ACGGATGGAGACTAGCACCCAACAACTTAAGTCATGTTTACTATGGGCAA
TACAAATGCTATGGACCGGGAGCCGAGACATCACAAAGAGTTAAATGGTC
ACAAAGCCTTACAAGCGAACAAGTTACACCCTTCCTTGATCAAGCGATTG
CCCTTCAATCCGAAAGCTGGCAAGATCGTTGGTCTCTCCTTCATCCTTAC
GGAGCAGAGCAAGGAAGCGTGGACGGTAAGAACAATATGGACCAAATAGG
AGAGGATCCCAGCCCCATCGGAGAGGACGTGGGGGTTGGTTGGGACCCTG
TGGAATGGAGTGGGGCGGAGGGGATGTCGATCAGCCCAGCGGAGGATATG
TCGAGCTGCGAGAGTCCTAGGTCTCCCGGGATTTTTCTTTTTCTTCTTTT
TGGTTTATTTGTTTGA
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protein sequence of MDP0000768667

>MDP0000768667 ID=MDP0000768667; Name=MDP0000768667; organism=Malus x domestica; type=polypeptide; length=405bp
MACGAANFTCLFVMAILMQAFMVVLSQPVEAEAISRSSKRFITVDKSGNG
DYTKIQYAIDAVPSGNAQLVFIWVKPGVYHEKIVVPSDKPYITVSGTGTA
HETVIIWNECGEIFDVAVFTVLATDFIGRFITIQNTYGIGAKAVALRVSA
DRAAFYACRILSRQDALFDHVGRHYYGHCYIEGDTDLIFGNAASFFEKCH
LHSLSEHKGAITAQRRYAPSDQSGFTFLACVVTGVKTALLGRPWGPYSTV
VFAYTYMSNVILPEGWDGWRLAPNNLSHVYYGQYKCYGPGAETSQRVKWS
QSLTSEQVTPFLDQAIALQSESWQDRWSLLHPYGAEQGSVDGKNNMDQIG
EDPSPIGEDVGVGWDPVEWSGAEGMSISPAEDMSSCESPRSPGIFLFLLF
GLFV*
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mRNA from alignment at chr12:21370501..21371916+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000768667 ID=MDP0000768667; Name=MDP0000768667; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr12:21370501..21371916+ (Malus x domestica
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mRNA from alignment at MDC019448.105:18437..19852+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000768667 ID=MDP0000768667; Name=MDP0000768667; organism=Malus x domestica; type=mRNA; length=1416bp; location=Sequence derived from: MDC019448.105:18437..19852+ (Malus x domestica
ATGGCTTGTGGTGCTGCTAATTTCACGTGTTTATTCGTCATGGCAATACT
AATGCAAGCTTTCATGGTCGTGCTCTCTCAACCAGTCGAAGCAGAAGCAA
TCTCGAGGTCCTCGAAAAGATTCATCACCGTCGACAAATCCGGCAACGGC
GATTACACCAAAATACAGTACGCAATCGACGCCGTGCCGTCAGGTAATGC
TCAGCTTGTGTTTATTTGGGTCAAGCCTGGTGTGTACCATGAAAAAATAG
TTGTACCTTCGGACAAACCCTATATAACAGTAAGTGGCACGGGTACTGCA
CATGAGACTGTAATAATATGGAACGAATGCGGAGAGATTTTTGATGTTGC
CGTCTTTACCGTGTTGGCTACCGATTTTATAGGCCGCTTTATCACCATTC
AGGTACGATTATATACCTATGAAACAAGTTTCATATTTACTAAAGAACAG
ATTGTCGATATGTCATTGATAATGTGTCGTTACCATTGTAACCAGCAAAA
CGTACTAACATATTAACCCTAAACCAGTCACATTATCTATACATTATCGA
CAATTTCTTCACATGCATGCACATTAACGAATACTTTAATTTTCTCATTG
CAGAATACATATGGAATTGGTGCGAAAGCAGTGGCGCTTAGAGTCTCGGC
CGATAGAGCAGCATTCTACGCATGTAGAATTTTGTCTCGGCAAGATGCCT
TGTTCGACCACGTCGGCAGGCACTACTACGGACACTGCTACATTGAAGGC
GACACCGATTTAATTTTCGGAAACGCTGCTTCTTTCTTCGAGAAGTGTCA
TTTGCATTCGCTTTCGGAGCACAAAGGAGCGATCACAGCACAACGAAGGT
ATGCGCCTTCCGATCAATCGGGGTTCACCTTCTTGGCATGCGTCGTCACC
GGCGTCAAAACGGCACTACTAGGACGGCCGTGGGGTCCCTATTCGACAGT
CGTCTTTGCGTATACTTACATGTCAAACGTGATTCTTCCAGAAGGGTGGG
ACGGATGGAGACTAGCACCCAACAACTTAAGTCATGTTTACTATGGGCAA
TACAAATGCTATGGACCGGGAGCCGAGACATCACAAAGAGTTAAATGGTC
ACAAAGCCTTACAAGCGAACAAGTTACACCCTTCCTTGATCAAGCGATTG
CCCTTCAATCCGAAAGCTGGCAAGATCGTTGGTCTCTCCTTCATCCTTAC
GGAGCAGAGCAAGGAAGCGTGGACGGTAAGAACAATATGGACCAAATAGG
AGAGGATCCCAGCCCCATCGGAGAGGACGTGGGGGTTGGTTGGGACCCTG
TGGAATGGAGTGGGGCGGAGGGGATGTCGATCAGCCCAGCGGAGGATATG
TCGAGCTGCGAGAGTCCTAGGTCTCCCGGGATTTTTCTTTTTCTTCTTTT
TGGTTTATTTGTTTGA
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Coding sequence (CDS) from alignment at MDC019448.105:18437..19852+

>MDP0000768667 ID=MDP0000768667; Name=MDP0000768667; organism=Malus x domestica; type=CDS; length=1215bp; location=Sequence derived from: MDC019448.105:18437..19852+ (Malus x domestica
ATGGCTTGTGGTGCTGCTAATTTCACGTGTTTATTCGTCATGGCAATACT
AATGCAAGCTTTCATGGTCGTGCTCTCTCAACCAGTCGAAGCAGAAGCAA
TCTCGAGGTCCTCGAAAAGATTCATCACCGTCGACAAATCCGGCAACGGC
GATTACACCAAAATACAGTACGCAATCGACGCCGTGCCGTCAGGTAATGC
TCAGCTTGTGTTTATTTGGGTCAAGCCTGGTGTGTACCATGAAAAAATAG
TTGTACCTTCGGACAAACCCTATATAACAGTAAGTGGCACGGGTACTGCA
CATGAGACTGTAATAATATGGAACGAATGCGGAGAGATTTTTGATGTTGC
CGTCTTTACCGTGTTGGCTACCGATTTTATAGGCCGCTTTATCACCATTC
AGAATACATATGGAATTGGTGCGAAAGCAGTGGCGCTTAGAGTCTCGGCC
GATAGAGCAGCATTCTACGCATGTAGAATTTTGTCTCGGCAAGATGCCTT
GTTCGACCACGTCGGCAGGCACTACTACGGACACTGCTACATTGAAGGCG
ACACCGATTTAATTTTCGGAAACGCTGCTTCTTTCTTCGAGAAGTGTCAT
TTGCATTCGCTTTCGGAGCACAAAGGAGCGATCACAGCACAACGAAGGTA
TGCGCCTTCCGATCAATCGGGGTTCACCTTCTTGGCATGCGTCGTCACCG
GCGTCAAAACGGCACTACTAGGACGGCCGTGGGGTCCCTATTCGACAGTC
GTCTTTGCGTATACTTACATGTCAAACGTGATTCTTCCAGAAGGGTGGGA
CGGATGGAGACTAGCACCCAACAACTTAAGTCATGTTTACTATGGGCAAT
ACAAATGCTATGGACCGGGAGCCGAGACATCACAAAGAGTTAAATGGTCA
CAAAGCCTTACAAGCGAACAAGTTACACCCTTCCTTGATCAAGCGATTGC
CCTTCAATCCGAAAGCTGGCAAGATCGTTGGTCTCTCCTTCATCCTTACG
GAGCAGAGCAAGGAAGCGTGGACGGTAAGAACAATATGGACCAAATAGGA
GAGGATCCCAGCCCCATCGGAGAGGACGTGGGGGTTGGTTGGGACCCTGT
GGAATGGAGTGGGGCGGAGGGGATGTCGATCAGCCCAGCGGAGGATATGT
CGAGCTGCGAGAGTCCTAGGTCTCCCGGGATTTTTCTTTTTCTTCTTTTT
GGTTTATTTGTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000070Pectinesterase_cat
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification